Rh3BG312400

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018926
Physical Location & Seq
Reverse (-)
31721107 .. 31722533
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG312400.1

Sequence Viewer

Length: 405 bp
ATGGAGAAGATAGAGAAGTTCTATTCCCTCATCAGACACTTTCGCGAGGCTCGGAATCGTCTGATCGGATTACGAAAGACACGGCCAAACCATGAGGTCGGCGATGAAGTGGAGCCGGAGAAGATGAAAACCAGCAAGAAAAGGAAGAAAACGGGCGATGATGAGCGTGATCATGAACGGAGATTGAGTACTTGGGTGCCATCATTTGAATGCGAGGATTTCACCAACAAAGAGGTTGAGTATCCAGGAACTTGTCTAAGCTTCCCTGCTCTTCCTTGTAACACTAGTGCTAACACTAGCAATAATGGTAAACAAAAAGTAGAAGATGATGATGCTTCAGAGTGTCTGGACCTTCGACTTGCCCTAAACATATACAAGAATAATTTCCATGCGGCCCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

134

Amino Acids

15.63

Weight (kDa)

7.68

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 2 - 118 1.4e-17 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018926)

Species Orthologous Gene IDs
pyrus_communis pycom09g19480
rosa_chinensis RchiOBHm_Chr3g0486821
rosa_laevigata RLG00000023060
rosa_roxburghii Rroxscaffold_6G00395560
rosa_rugosa Rorug03G0227300
rosa_samantha Rh3AG277400 Rh3BG312400 Rh3CG311400 Rh3DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AccII CGCG 1 cut(s) 45
AciI CCGC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 1 cut(s) 209
AhlI ACTAGT 1 cut(s) 284
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
AoxI GGCC 2 cut(s) 83, 393
Asp700I GAANNNNTTC 1 cut(s) 383
AspS9I GGNCC 2 cut(s) 349, 394
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 196
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 246
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 285, 297
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
BmcAI AGTACT 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 349, 394
BmiI GGNNCC 2 cut(s) 114, 198
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
BseBI CCWGG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 85, 395
BshNI GGYRCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 116
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 85, 395
Bsp143I GATC 2 cut(s) 63, 169
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 1 cut(s) 392
BspANI GGCC 2 cut(s) 85, 395
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 114, 198
BspQI GCTCTTC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 196
BssMI GATC 2 cut(s) 63, 169
Bst2UI CCWGG 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 2 cut(s) 66, 172
BstMBI GATC 2 cut(s) 63, 169
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstUI CGCG 1 cut(s) 45
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 85, 395
BtgZI GCGATG 2 cut(s) 117, 171
BtuMI TCGCGA 1 cut(s) 45
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 349, 394
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 92, 173, 389
CviJI RGCY 5 cut(s) 50, 85, 115, 261, 395
CviKI_1 RGCY 5 cut(s) 50, 85, 115, 261, 395
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 257
DpnI GATC 2 cut(s) 65, 171
DpnII GATC 2 cut(s) 63, 169
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 3 cut(s) 95, 176, 392
FaiI YATR 5 cut(s) 93, 174, 371, 373, 390
FatI CATG 3 cut(s) 91, 172, 388
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 393
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 2 cut(s) 285, 297
GluI GCNGC 1 cut(s) 393
HaeIII GGCC 2 cut(s) 85, 395
HapII CCGG 1 cut(s) 116
Hin1II CATG 3 cut(s) 95, 176, 392
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 5 cut(s) 35, 54, 63, 68, 340
Hpy188III TCNNGA 3 cut(s) 44, 173, 347
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 3 cut(s) 95, 176, 392
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 63, 169
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 129, 145, 231, 258, 279, 332
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 285, 297
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 65, 171
MboI GATC 2 cut(s) 63, 169
MboII GAAGA 5 cut(s) 19, 133, 157, 263, 335
MluCI AATT 1 cut(s) 382
MnlI CCTC 5 cut(s) 38, 40, 88, 208, 226
MroXI GAANNNNTTC 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 208
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 45
NdeII GATC 2 cut(s) 63, 169
NlaIII CATG 3 cut(s) 95, 176, 392
NlaIV GGNNCC 2 cut(s) 114, 198
NruI TCGCGA 1 cut(s) 45
PagI TCATGA 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 276
PctI GAATGC 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 114, 198
PspPI GGNCC 2 cut(s) 349, 394
RruI TCGCGA 1 cut(s) 45
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 2 cut(s) 63, 169
Sau96I GGNCC 2 cut(s) 349, 394
ScaI AGTACT 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 246
SetI ASST 4 cut(s) 99, 237, 263, 354
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 1 cut(s) 382
SsiI CCGC 1 cut(s) 392
SspMI CTAG 2 cut(s) 285, 297
StyD4I CCNGG 1 cut(s) 244
TaqI TCGA 1 cut(s) 355
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 188
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 120, 140, 189
TspGWI ACGGA 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 2 cut(s) 285, 297
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.