RLG00000023060

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018926
Physical Location & Seq
Forward (+)
17507539 .. 17507976
438 bp
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UTR
Exon/CDS
Intron
RLM00000023060

Sequence Viewer

Length: 438 bp
ATGGCGGAAAACGAGAAGAAGACTGATGATCGTCGGGAACTGGAAGAAGAAGAAGAAGAAGAGGAGGAGATGGAGAAGATAGAGAAGTTCTATTCCCTCATCAGACACTTTCGCGAGGCTCGGAATCGTCTGATCGGATTACGAAAGACGCGGCCAAACCACGAGGTCGGCGATGAAGTGGAGCCGGAGAAGATGAAAACCAGCAAGAAAAGGAAGAAAACGGGCGATGATGATCGTGATCATGAACGGAGATTGAGTACTTGGGTGCCATCATTTGAATGCGAGGATTTCACCAACAAAGAGGTTGAGTATCCAGGAACTTGTCCAAGCTTCCCTGCTCTTCCTTGTAACACTAGTGCTAACACTAGCAATAATGGTAAAGGAAAAGTAGAAGATGATGATGCTTCAGAGTGTCTGGACCTTCGACTTGCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

146

Amino Acids

16.98

Weight (kDa)

4.91

Isoelectric Point (pI)

65.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 19 - 141 3.8e-18 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018926)

Species Orthologous Gene IDs
pyrus_communis pycom09g19480
rosa_chinensis RchiOBHm_Chr3g0486821
rosa_laevigata RLG00000023060
rosa_roxburghii Rroxscaffold_6G00395560
rosa_rugosa Rorug03G0227300
rosa_samantha Rh3AG277400 Rh3BG312400 Rh3CG311400 Rh3DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AccII CGCG 2 cut(s) 114, 151
AciI CCGC 2 cut(s) 5, 151
AcoI YGGCCR 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 353
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
AoxI GGCC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 265
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 26
BccI CCATC 2 cut(s) 64, 277
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 321
BclI TGATCA 1 cut(s) 238
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 2 cut(s) 354, 366
BfuI GTATCC 1 cut(s) 321
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 183, 267
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 26
BsaBI GATNNNNATC 2 cut(s) 231, 237
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 2 cut(s) 231, 237
BseBI CCWGG 1 cut(s) 315
BseJI GATNNNNATC 2 cut(s) 231, 237
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 77, 80
Bsh1236I CGCG 2 cut(s) 114, 151
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 185
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 28, 132, 232, 238
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 2 cut(s) 5, 151
BspANI GGCC 1 cut(s) 154
BspFNI CGCG 2 cut(s) 114, 151
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 183, 267
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 265
BsrI ACTGG 1 cut(s) 45
BssMI GATC 4 cut(s) 28, 132, 232, 238
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 315
Bst6I CTCTTC 2 cut(s) 54, 345
BstFNI CGCG 2 cut(s) 114, 151
BstKTI GATC 4 cut(s) 31, 135, 235, 241
BstMBI GATC 4 cut(s) 28, 132, 232, 238
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstUI CGCG 2 cut(s) 114, 151
BstV2I GAAGAC 1 cut(s) 26
BsuI GTATCC 1 cut(s) 321
BsuRI GGCC 1 cut(s) 154
BtgZI GCGATG 2 cut(s) 186, 240
BtuMI TCGCGA 1 cut(s) 114
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 418
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 242
CviJI RGCY 4 cut(s) 119, 154, 184, 330
CviKI_1 RGCY 4 cut(s) 119, 154, 184, 330
CviQI GTAC 1 cut(s) 258
DpnI GATC 4 cut(s) 30, 134, 234, 240
DpnII GATC 4 cut(s) 28, 132, 232, 238
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 54, 345
EarI CTCTTC 2 cut(s) 54, 345
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 1 cut(s) 245
FaiI YATR 1 cut(s) 243
FatI CATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 2 cut(s) 354, 366
GluI GCNGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 154
HapII CCGG 1 cut(s) 185
HgaI GACGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 5 cut(s) 104, 123, 132, 137, 409
Hpy188III TCNNGA 5 cut(s) 35, 113, 236, 242, 416
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 431
Hsp92II CATG 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 4 cut(s) 28, 132, 232, 238
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 7 cut(s) 26, 198, 214, 300, 327, 348, 401
LweI GCATC 1 cut(s) 391
MaeI CTAG 2 cut(s) 354, 366
MaeIII GTNAC 1 cut(s) 347
MalI GATC 4 cut(s) 30, 134, 234, 240
MboI GATC 4 cut(s) 28, 132, 232, 238
MnlI CCTC 7 cut(s) 55, 58, 107, 109, 157, 277, 295
MslI CAYNNNNRTG 1 cut(s) 277
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 2 cut(s) 114, 151
NdeII GATC 4 cut(s) 28, 132, 232, 238
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 183, 267
NruI TCGCGA 1 cut(s) 114
PagI TCATGA 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 183, 267
PspPI GGNCC 1 cut(s) 418
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 4 cut(s) 28, 132, 232, 238
Sau96I GGNCC 1 cut(s) 418
ScaI AGTACT 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 315
SetI ASST 4 cut(s) 168, 306, 332, 423
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 353
SsiI CCGC 2 cut(s) 5, 151
SspMI CTAG 2 cut(s) 354, 366
StyD4I CCNGG 1 cut(s) 313
TaqI TCGA 1 cut(s) 424
TatI WGTACW 1 cut(s) 257
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 189, 209, 258
TspGWI ACGGA 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 418
XspI CTAG 2 cut(s) 354, 366
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.