Rroxscaffold_6G00395560

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018926
Physical Location & Seq
Forward (+)
16677844 .. 16678278
435 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00395560.1

Sequence Viewer

Length: 435 bp
ATGGCGGAAAACGAGAAGAAGACTGATGATCGTCAGGAACAAGAAGAAGAAGAAGAAGAGGAGGAGATGGAGAAGATAGAGAAGTTCTATTCCCTCATCAGACACTATCGCGAGGCTCGGAATCGTCTGATCGGATTACGAAAGACACGGCCAAACCATGAGGTCGGCGATGAAGTGGAGCCGGAGAAGATGAAAACCACCAAGAAAAGGAAGAAAACGGGCGATGATGATCGTGATCATGAACGGAGATTGAGTACTTGGGTGCCATCATTTGAATGCGAGGATTTCACCAACAAAGAGGTTGAGTATCCAGGAACTTGTCTAAGCTTCCCTGCTCTTCCATGTAACACTAGTGCTAACACTAGCAATAATGGTAAAGAAAAAGTAGAAGATGATAATGCTTCAGAGTGTCTGGACCTTAGACTTGCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

144

Amino Acids

16.96

Weight (kDa)

4.9

Isoelectric Point (pI)

67.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 18 - 140 5.8e-19 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018926)

Species Orthologous Gene IDs
pyrus_communis pycom09g19480
rosa_chinensis RchiOBHm_Chr3g0486821
rosa_laevigata RLG00000023060
rosa_roxburghii Rroxscaffold_6G00395560
rosa_rugosa Rorug03G0227300
rosa_samantha Rh3AG277400 Rh3BG312400 Rh3CG311400 Rh3DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 1 cut(s) 275
AhlI ACTAGT 1 cut(s) 350
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
AoxI GGCC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 26
BccI CCATC 2 cut(s) 61, 274
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 318
BclI TGATCA 1 cut(s) 235
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 2 cut(s) 351, 363
BfuI GTATCC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 180, 264
BmrFI CCNGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 26
BsaBI GATNNNNATC 2 cut(s) 228, 234
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse8I GATNNNNATC 2 cut(s) 228, 234
BseBI CCWGG 1 cut(s) 312
BseJI GATNNNNATC 2 cut(s) 228, 234
BseLI CCNNNNNNNGG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 74, 77
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 207
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 4 cut(s) 28, 129, 229, 235
Bsp68I TCGCGA 1 cut(s) 111
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 151
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 180, 264
BspQI GCTCTTC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 262
BssMI GATC 4 cut(s) 28, 129, 229, 235
Bst2UI CCWGG 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 51, 342
BstDEI CTNAG 2 cut(s) 323, 419
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 4 cut(s) 31, 132, 232, 238
BstMBI GATC 4 cut(s) 28, 129, 229, 235
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstUI CGCG 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 26
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 1 cut(s) 151
BtgZI GCGATG 2 cut(s) 183, 237
BtuMI TCGCGA 1 cut(s) 111
CciI TCATGA 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 415
Csp6I GTAC 1 cut(s) 255
CviAII CATG 3 cut(s) 158, 239, 342
CviJI RGCY 4 cut(s) 116, 151, 181, 327
CviKI_1 RGCY 4 cut(s) 116, 151, 181, 327
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 323, 419
DpnI GATC 4 cut(s) 30, 131, 231, 237
DpnII GATC 4 cut(s) 28, 129, 229, 235
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 51, 342
EarI CTCTTC 2 cut(s) 51, 342
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 3 cut(s) 161, 242, 345
FaiI YATR 3 cut(s) 159, 240, 343
FatI CATG 3 cut(s) 157, 238, 341
FbaI TGATCA 1 cut(s) 235
FspBI CTAG 2 cut(s) 351, 363
HaeIII GGCC 1 cut(s) 151
HapII CCGG 1 cut(s) 182
Hin1II CATG 3 cut(s) 161, 242, 345
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 5 cut(s) 101, 120, 129, 134, 406
Hpy188III TCNNGA 5 cut(s) 35, 110, 233, 239, 413
HpyF3I CTNAG 2 cut(s) 323, 419
Hsp92II CATG 3 cut(s) 161, 242, 345
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 4 cut(s) 28, 129, 229, 235
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 20, 195, 297, 324, 345, 398
MaeI CTAG 2 cut(s) 351, 363
MaeIII GTNAC 1 cut(s) 344
MalI GATC 4 cut(s) 30, 131, 231, 237
MboI GATC 4 cut(s) 28, 129, 229, 235
MnlI CCTC 7 cut(s) 52, 55, 104, 106, 154, 274, 292
MslI CAYNNNNRTG 1 cut(s) 274
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 111
NdeII GATC 4 cut(s) 28, 129, 229, 235
NlaIII CATG 3 cut(s) 161, 242, 345
NlaIV GGNNCC 2 cut(s) 180, 264
NruI TCGCGA 1 cut(s) 111
PagI TCATGA 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 342
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 180, 264
PspPI GGNCC 1 cut(s) 415
RruI TCGCGA 1 cut(s) 111
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 342
Sau3AI GATC 4 cut(s) 28, 129, 229, 235
Sau96I GGNCC 1 cut(s) 415
ScaI AGTACT 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 312
SetI ASST 4 cut(s) 165, 303, 329, 420
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 274
SpeI ACTAGT 1 cut(s) 350
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 351, 363
StyD4I CCNGG 1 cut(s) 310
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 186, 206, 255
TspGWI ACGGA 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 415
XspI CTAG 2 cut(s) 351, 363
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.