Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0018138

Physical Location & Seq

Genomic Coordinates Forward (+)

816707 .. 818100

Gene Structure 1394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAACTTTGGTTGCAATGCCCAAGATTCGAGTGAAGGTTAGACTTTTCCCAGATGTTTTTCCTCCATTTTTCCCACAATCCCCCAGCAAAGTCTCAGTCTTCCATGGAAGGAGAAGGAGTTTCTCAGTCTCTGCTGCGTCGACCCAACATCCAGTACGCGTTCGCTTCGCTCCTTCTCCCACCGGGAATCTCCATGTCGGTGGAGCCAGAACTGCGCTTTTCAATTATCTGTTTGCCAGGTCCAATGGAGGGAAGTTTGTTTTGAGAATTGAAGACACTGATTTGGAGAGGTCTACTAAGGAGTTTGAGGAGGCTGTGTTAAATGATCTCTCTTGGCTTGGCCTTGATTGGGATGAAGGACCCGGTGTTGATGGAGACTATGGTCCCTACAGACAATCAGAAAGAAATTCGTTGTACAAGCAATATGCTGAGAAGCTCTTAGAATCTGGTCATGTCTATCGCTGCTTTTGCTCTAGTGAGGAACTAGAAAAAATGAAGGAGATTGCAAAACTAAAACAACTGCCACCAGTATCACCGGGAAGTGGGCCAATGCAACAGACAAAGAGGTACAAGAAGAGCTGGAAAGAGGAACTCCTTACACATATCGGTTTCGTGTGCCAAAGGAAGGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

213

Amino Acids

24.13

Weight (kDa)

9.42

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	53 - 171	3.2e-50	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018138)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g00740
rosa_chinensis	RchiOBHm_Chr3g0490481
rosa_laevigata	RLG00000022888
rosa_multiflora	Rmu_sc0000375.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358670
rosa_samantha	Rh1AG237900 Rh3AG293100 Rh3CG327200 Rh4AG027400 Rh5AG387000
rosa_wichuraiana	Rw5G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	143, 296
AccII	CGCG	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	409
AfaI	GTAC	3 cut(s)	159, 419, 572
AfiI	CCNNNNNNNGG	4 cut(s)	252, 352, 545, 628
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	226, 275
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	2 cut(s)	439, 582
AluI	AGCT	2 cut(s)	439, 582
Alw26I	GTCTC	3 cut(s)	100, 136, 372
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	343, 548
ApeKI	GCWGC	2 cut(s)	137, 465
ApoI	RAATTY	1 cut(s)	409
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	4 cut(s)	243, 362, 386, 548
AsuC2I	CCSGG	3 cut(s)	187, 366, 540
AsuHPI	GGTGA	1 cut(s)	528
AvaII	GGWCC	3 cut(s)	243, 362, 386
BbsI	GAAGAC	2 cut(s)	94, 282
BbvI	GCAGC	2 cut(s)	124, 452
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	241
BcnI	CCSGG	3 cut(s)	187, 366, 540
BcoDI	GTCTC	3 cut(s)	100, 136, 372
BfaI	CTAG	2 cut(s)	477, 488
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	2 cut(s)	138, 466
BlsI	GCNGC	2 cut(s)	139, 467
Bme1390I	CCNGG	4 cut(s)	187, 241, 366, 540
Bme18I	GGWCC	3 cut(s)	243, 362, 386
BmgT120I	GGNCC	4 cut(s)	243, 362, 386, 548
BmiI	GGNNCC	3 cut(s)	208, 364, 388
BmrFI	CCNGG	4 cut(s)	187, 241, 366, 540
BoxI	GACNNNNGTC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	94, 282
BpuMI	CCSGG	3 cut(s)	187, 366, 540
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 305, 335
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 352, 545, 628
Bse1I	ACTGG	2 cut(s)	155, 530
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	151, 361
BseLI	CCNNNNNNNGG	4 cut(s)	252, 352, 545, 628
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	111, 141, 423
BseNI	ACTGG	2 cut(s)	155, 530
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	124, 452
BseYI	CCCAGC	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	345, 550
BsiSI	CCGG	3 cut(s)	186, 366, 539
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	4 cut(s)	252, 352, 545, 628
BsmAI	GTCTC	3 cut(s)	100, 136, 372
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	345, 550
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	106
BspANI	GGCC	2 cut(s)	345, 550
BspCNI	CTCAG	3 cut(s)	110, 140, 424
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	208, 364, 388
BspQI	GCTCTTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	155, 530
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	5 cut(s)	97, 127, 300, 432, 442
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	151, 361
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	3 cut(s)	100, 136, 372
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 471
BstNI	CCWGG	1 cut(s)	241
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	4 cut(s)	185, 239, 364, 538
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	124, 452
BstV2I	GAAGAC	2 cut(s)	94, 282
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	345, 550
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	151, 361
BtsIMutI	CAGTG	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	4 cut(s)	243, 362, 386, 548
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	158, 418, 571
CviAII	CATG	3 cut(s)	107, 197, 455
CviJI	RGCY	7 cut(s)	209, 317, 340, 345, 439, 550, 582
CviKI_1	RGCY	7 cut(s)	209, 317, 340, 345, 439, 550, 582
CviQI	GTAC	3 cut(s)	158, 418, 571
DdeI	CTNAG	5 cut(s)	97, 127, 300, 432, 442
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	3 cut(s)	243, 362, 386
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	110, 200, 458
FaiI	YATR	6 cut(s)	108, 198, 384, 429, 456, 606
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	3 cut(s)	106, 196, 454
FblI	GTMKAC	2 cut(s)	143, 296
Fnu4HI	GCNGC	2 cut(s)	138, 466
FokI	GGATG	2 cut(s)	138, 368
Fsp4HI	GCNGC	2 cut(s)	138, 466
FspBI	CTAG	2 cut(s)	477, 488
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	138, 466
GsaI	CCCAGC	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	345, 550
HapII	CCGG	3 cut(s)	186, 366, 539
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	110, 200, 458
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	3 cut(s)	28, 190, 446
HpaII	CCGG	3 cut(s)	186, 366, 539
HphI	GGTGA	1 cut(s)	528
Hpy166II	GTNNAC	2 cut(s)	144, 297
Hpy188I	TCNGA	1 cut(s)	403
Hpy8I	GTNNAC	2 cut(s)	144, 297
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	7 cut(s)	31, 105, 111, 186, 353, 493, 622
HpyCH4V	TGCA	3 cut(s)	17, 509, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 471
HpyF3I	CTNAG	5 cut(s)	97, 127, 300, 432, 442
Hsp92II	CATG	3 cut(s)	110, 200, 458
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	2 cut(s)	178, 206
Lsp1109I	GCAGC	2 cut(s)	124, 452
MaeI	CTAG	2 cut(s)	477, 488
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	3 cut(s)	94, 287, 589
MluCI	AATT	3 cut(s)	226, 270, 409
MluI	ACGCGT	1 cut(s)	160
MnlI	CCTC	8 cut(s)	75, 245, 285, 304, 307, 475, 561, 583
MseI	TTAA	2 cut(s)	323, 637
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	3 cut(s)	186, 366, 539
MspR9I	CCNGG	4 cut(s)	187, 241, 366, 540
MvaI	CCWGG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	215, 471
NciI	CCSGG	3 cut(s)	187, 366, 540
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	110, 200, 458
NlaIV	GGNNCC	3 cut(s)	208, 364, 388
PciSI	GCTCTTC	1 cut(s)	572
PfeI	GAWTC	3 cut(s)	28, 190, 446
PkrI	GCNGC	2 cut(s)	139, 467
PpuMI	RGGWCCY	1 cut(s)	362
PshAI	GACNNNNGTC	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	208, 364, 388
PspPI	GGNCC	4 cut(s)	243, 362, 386, 548
PspPPI	RGGWCCY	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	3 cut(s)	159, 419, 572
RsaNI	GTAC	3 cut(s)	158, 418, 571
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	323, 637
SatI	GCNGC	2 cut(s)	138, 466
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	4 cut(s)	243, 362, 386, 548
ScrFI	CCNGG	4 cut(s)	187, 241, 366, 540
SetI	ASST	6 cut(s)	42, 245, 296, 441, 572, 584
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	3 cut(s)	243, 362, 386
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	3 cut(s)	226, 270, 409
SspMI	CTAG	2 cut(s)	477, 488
StyD4I	CCNGG	4 cut(s)	185, 239, 364, 538
StyI	CCWWGG	1 cut(s)	106
TaqI	TCGA	2 cut(s)	31, 143
TasI	AATT	3 cut(s)	226, 270, 409
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	28, 190, 446
Tru1I	TTAA	2 cut(s)	323, 637
Tru9I	TTAA	2 cut(s)	323, 637
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	137, 465
TspDTI	ATGAA	2 cut(s)	372, 512
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	3 cut(s)	243, 362, 386
XapI	RAATTY	1 cut(s)	409
XmiI	GTMKAC	2 cut(s)	143, 296
XspI	CTAG	2 cut(s)	477, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.