Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0018138

Physical Location & Seq

Genomic Coordinates Forward (+)

35707616 .. 35728129

Gene Structure 20514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG327200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGACCCTGGTCGCAATGCCCAGGATGAGAATCAATTTCACATCTTTTCCACATGTTTTCCCTTCATTTCTGGGCTCTCACTCTTTAATGGAAGGACGACCTTTTCAGTCTCGGCTTCTTCAACCCAAGATCAAGTACGTGTCCGCTTTACTACTTCTCCTACTAGGAATCTCCACGTTGGTGGATCCAGAACTACCCTCTTCAATTACCTCTTTGCCAGAGGCACTAGGATTTCCAATGCCTTACTTTGCACATGTATCCTTAATTCTTGCACCTGATAGACGTAAGTTATCAAAAAGGCATGGAGCAACTTCAGTGGGCCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

110

Amino Acids

12.17

Weight (kDa)

10.26

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018138)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g00740
rosa_chinensis	RchiOBHm_Chr3g0490481
rosa_laevigata	RLG00000022888
rosa_multiflora	Rmu_sc0000375.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358670
rosa_samantha	Rh1AG237900 Rh3AG293100 Rh3CG327200 Rh4AG027400 Rh5AG387000
rosa_wichuraiana	Rw5G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	182, 195
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	140
AflIII	ACRYGT	3 cut(s)	55, 141, 256
AgsI	TTSAA	2 cut(s)	125, 207
AjnI	CCWGG	2 cut(s)	9, 23
AleI	CACNNNNGTG	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	182, 195
AoxI	GGCC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	11, 25
BciVI	GTATCC	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	167, 230
BfuI	GTATCC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	11, 25
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	11, 25
BoxI	GACNNNNGTC	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	9, 23
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	11, 25
BseDI	CCNNGG	2 cut(s)	9, 23
BseGI	GGATG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	132, 187
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	182, 195
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	9, 23
BssMI	GATC	2 cut(s)	132, 187
Bst2UI	CCWGG	2 cut(s)	11, 25
Bst6I	CTCTTC	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	135, 190
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	132, 187
BstNI	CCWGG	2 cut(s)	11, 25
BstNSI	RCATGY	2 cut(s)	59, 260
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	9, 23
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	139
CspCI	CAANNNNNGTGG	1 cut(s)	300
CviAII	CATG	3 cut(s)	56, 257, 305
CviJI	RGCY	3 cut(s)	78, 118, 324
CviKI_1	RGCY	3 cut(s)	78, 118, 324
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	2 cut(s)	134, 189
DpnII	GATC	2 cut(s)	132, 187
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	9, 23
EcoT38I	GRGCYC	1 cut(s)	80
FaeI	CATG	3 cut(s)	59, 260, 308
FaiI	YATR	3 cut(s)	57, 258, 306
FatI	CATG	3 cut(s)	55, 256, 304
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	80
FspBI	CTAG	2 cut(s)	167, 230
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	59, 260, 308
HinfI	GANTC	2 cut(s)	33, 171
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	75, 89
HpyCH4IV	ACGT	3 cut(s)	141, 179, 286
HpyCH4V	TGCA	2 cut(s)	254, 275
HpySE526I	ACGT	3 cut(s)	141, 179, 286
Hsp92II	CATG	3 cut(s)	59, 260, 308
Kzo9I	GATC	2 cut(s)	132, 187
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	7 cut(s)	10, 23, 37, 59, 204, 234, 291
MaeI	CTAG	2 cut(s)	167, 230
MaeII	ACGT	3 cut(s)	141, 179, 286
MalI	GATC	2 cut(s)	134, 189
MboI	GATC	2 cut(s)	132, 187
MboII	GAAGA	2 cut(s)	113, 195
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	37, 207, 267
MnlI	CCTC	3 cut(s)	211, 217, 223
MseI	TTAA	2 cut(s)	89, 266
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	11, 25
MvaI	CCWGG	2 cut(s)	11, 25
NdeII	GATC	2 cut(s)	132, 187
NlaIII	CATG	3 cut(s)	59, 260, 308
NlaIV	GGNNCC	1 cut(s)	189
NmeAIII	GCCGAG	1 cut(s)	94
NspI	RCATGY	2 cut(s)	59, 260
OliI	CACNNNNGTG	1 cut(s)	182
PciI	ACATGT	2 cut(s)	55, 256
PfeI	GAWTC	2 cut(s)	33, 171
Ppu21I	YACGTR	1 cut(s)	142
PscI	ACATGT	2 cut(s)	55, 256
PshAI	GACNNNNGTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	9, 23
PspGI	CCWGG	2 cut(s)	9, 23
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	89, 266
Sau3AI	GATC	2 cut(s)	132, 187
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	11, 25
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	6 cut(s)	106, 144, 182, 215, 280, 289
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	37, 207, 267
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	2 cut(s)	167, 230
StyD4I	CCNGG	2 cut(s)	9, 23
TaiI	ACGT	3 cut(s)	144, 182, 289
TasI	AATT	3 cut(s)	37, 207, 267
TfiI	GAWTC	2 cut(s)	33, 171
Tru1I	TTAA	2 cut(s)	89, 266
Tru9I	TTAA	2 cut(s)	89, 266
TscAI	CASTG	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	324
XceI	RCATGY	2 cut(s)	59, 260
XspI	CTAG	2 cut(s)	167, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.