Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018138

Physical Location & Seq

Genomic Coordinates Forward (+)

44765258 .. 44770884

Gene Structure 5627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAAGCTTGAGATCTGCTTCGCGTTACCCAAATCAATTCAAGGCTTCTTAATCAGAGAAGAATCACAAGGGAGGACCTTTTTAGTCTCAGCTTCTTCAGCCCAAGACCAAGTACGTGTCCTCTTTGCTCCTTCTCCTACTGGGAATCTCCACGTTGGTGGAGCCAGAACTGCCCTCTTCAATTACCTCTTTGTCAGGTCCAATGGAGGGAAGTTTGTTTTTAGAATTGAAGACACTGATTTGGAAAGGTCTACTAAGGAGTCCAAGGAGGCTGTGTTGCAGGATCTCTCTTGGCTTGGTCTTGATTGGGATGAAGGGCCTGGTGTGAATGGAGATTATGGGCCATATCGGCAATTAGAAAGAAATTCTTTGTACAAGCAATATGCTGAGAAGCTTTTAGAGTGTGGTTATGTTTATTGCAGCTTTTGCTCTAGTGAGAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

148

Amino Acids

16.71

Weight (kDa)

5.89

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	37 - 147	2.1e-38	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018138)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g00740
rosa_chinensis	RchiOBHm_Chr3g0490481
rosa_laevigata	RLG00000022888
rosa_multiflora	Rmu_sc0000375.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358670
rosa_samantha	Rh1AG237900 Rh3AG293100 Rh3CG327200 Rh4AG027400 Rh5AG387000
rosa_wichuraiana	Rw5G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	251
AccII	CGCG	1 cut(s)	23
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	114, 374
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	41, 181, 230
AjnI	CCWGG	1 cut(s)	319
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	4 cut(s)	7, 92, 394, 423
AluI	AGCT	4 cut(s)	7, 92, 394, 423
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	317, 341
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	1 cut(s)	364
AspS9I	GGNCC	4 cut(s)	75, 198, 317, 341
AvaII	GGWCC	2 cut(s)	75, 198
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	432
BglI	GCCNNNNNGGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	2 cut(s)	75, 198
BmgT120I	GGNCC	4 cut(s)	75, 198, 317, 341
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	102, 378
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	319, 343
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	319, 343
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	12, 283
BspANI	GGCC	2 cut(s)	319, 343
BspCNI	CTCAG	2 cut(s)	101, 379
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	12, 283
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstAUI	TGTACA	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	3 cut(s)	88, 255, 387
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	15, 286
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	12, 283
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 170, 349, 426
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	12, 283
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	2 cut(s)	12, 283
BsuRI	GGCC	2 cut(s)	319, 343
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	234
Cfr13I	GGNCC	4 cut(s)	75, 198, 317, 341
Csp6I	GTAC	2 cut(s)	113, 373
CviQI	GTAC	2 cut(s)	113, 373
DdeI	CTNAG	3 cut(s)	88, 255, 387
DpnI	GATC	2 cut(s)	14, 285
DpnII	GATC	2 cut(s)	12, 283
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	75, 198
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	2 cut(s)	75, 317
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaiI	YATR	4 cut(s)	339, 346, 384, 411
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FblI	GTMKAC	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	319, 343
HindIII	AAGCTT	2 cut(s)	5, 392
HinfI	GANTC	3 cut(s)	62, 145, 260
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	141, 308
HpyCH4IV	ACGT	2 cut(s)	115, 153
HpyCH4V	TGCA	2 cut(s)	280, 420
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 170, 349, 426
HpyF3I	CTNAG	3 cut(s)	88, 255, 387
HpySE526I	ACGT	2 cut(s)	115, 153
Kzo9I	GATC	2 cut(s)	12, 283
LmnI	GCTCC	2 cut(s)	133, 161
LpnPI	CCDG	6 cut(s)	126, 178, 181, 266, 306, 333
Lsp1109I	GCAGC	1 cut(s)	432
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	2 cut(s)	115, 153
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	2 cut(s)	14, 285
MboI	GATC	2 cut(s)	12, 283
MboII	GAAGA	4 cut(s)	71, 87, 169, 242
MflI	RGATCY	2 cut(s)	12, 283
MluCI	AATT	5 cut(s)	36, 181, 225, 353, 364
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	66, 131, 185, 197, 200, 262
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	98, 170, 349, 426
NdeII	GATC	2 cut(s)	12, 283
NlaIV	GGNNCC	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	62, 145
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	4 cut(s)	75, 198, 317, 341
PspPPI	RGGWCCY	1 cut(s)	75
PsuI	RGATCY	2 cut(s)	12, 283
RsaI	GTAC	2 cut(s)	114, 374
RsaNI	GTAC	2 cut(s)	113, 373
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	2 cut(s)	12, 283
Sau96I	GGNCC	4 cut(s)	75, 198, 317, 341
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	75, 198
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	36, 181, 225, 353, 364
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	2 cut(s)	118, 156
TasI	AATT	5 cut(s)	36, 181, 225, 353, 364
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	62, 145
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	420
TspDTI	ATGAA	2 cut(s)	17, 327
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	75, 198
XapI	RAATTY	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	251
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.