Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018138

Physical Location & Seq

Genomic Coordinates Reverse (-)

14108736 .. 14109797

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCCCTGGATGAGAATCAATTTCACATCTTTTCCACATGTTTTCCCTCCATTTCTGGGCTCTCACTCTTTAATGGAAGGACGACCTTTTCAGTCTCGGCTTCTTCAACCCAAGATCAAGTACGTGTCCGCTTTGCTACTTCTCCTACTGGGAATCTCCACGTTGGTGGAGCCAAAACTACCCTCTTCAATTACCTCTTTGCCAGGTCCAATGAAGGGAAGTCCTGGTGTGAATGGAGTTTATGGGCCATATCGGCAATCAGAAAGAAATTCTTTGTACAAGAAATATGCTGAGAAGCTTTTAGAGTGTGGTTATGTTTTTGCTGCTTTTGCTCTAGTGAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

116

Amino Acids

12.89

Weight (kDa)

9.94

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018138)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g00740
rosa_chinensis	RchiOBHm_Chr3g0490481
rosa_laevigata	RLG00000022888
rosa_multiflora	Rmu_sc0000375.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358670
rosa_samantha	Rh1AG237900 Rh3AG293100 Rh3CG327200 Rh4AG027400 Rh5AG387000
rosa_wichuraiana	Rw5G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	268
AfaI	GTAC	2 cut(s)	122, 278
AfiI	CCNNNNNNNGG	2 cut(s)	56, 215
AflIII	ACRYGT	2 cut(s)	37, 123
AgsI	TTSAA	2 cut(s)	107, 189
AjnI	CCWGG	3 cut(s)	5, 202, 223
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	206, 245
AvaII	GGWCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	310
BciT130I	CCWGG	3 cut(s)	7, 204, 225
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	335, 346
BglI	GCCNNNNNGGC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	3 cut(s)	7, 204, 225
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 245
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	3 cut(s)	7, 204, 225
BmrI	ACTGGG	1 cut(s)	158
BmuI	ACTGGG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 215
Bse1I	ACTGG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	14
BseBI	CCWGG	3 cut(s)	7, 204, 225
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	15
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	56, 215
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	56, 215
BsmAI	GTCTC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	7, 204, 225
Bst6I	CTCTTC	1 cut(s)	190
BstAUI	TGTACA	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 329
BstNI	CCWGG	3 cut(s)	7, 204, 225
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	5, 202, 223
BstV1I	GCAGC	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	206, 245
Csp6I	GTAC	2 cut(s)	121, 277
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	5 cut(s)	60, 100, 172, 247, 298
CviKI_1	RGCY	5 cut(s)	60, 100, 172, 247, 298
CviQI	GTAC	2 cut(s)	121, 277
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	5, 202, 223
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	1 cut(s)	41
FaiI	YATR	5 cut(s)	39, 243, 250, 288, 315
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	335, 346
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	15, 153
Hpy188I	TCNGA	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	71, 208
HpyCH4IV	ACGT	2 cut(s)	123, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 329
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	123, 161
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	7 cut(s)	19, 41, 134, 189, 210, 216, 237
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	335, 346
MaeII	ACGT	2 cut(s)	123, 161
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	2 cut(s)	95, 177
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	3 cut(s)	19, 189, 268
MnlI	CCTC	4 cut(s)	57, 193, 205, 333
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	7, 204, 225
MvaI	CCWGG	3 cut(s)	7, 204, 225
MwoI	GCNNNNNNNGC	2 cut(s)	253, 329
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	76
NspI	RCATGY	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	164
PciI	ACATGT	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	15, 153
PkrI	GCNGC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	124
PscI	ACATGT	1 cut(s)	37
Psp6I	CCWGG	3 cut(s)	5, 202, 223
PspGI	CCWGG	3 cut(s)	5, 202, 223
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	206, 245
RsaI	GTAC	2 cut(s)	122, 278
RsaNI	GTAC	2 cut(s)	121, 277
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	2 cut(s)	206, 245
ScrFI	CCNGG	3 cut(s)	7, 204, 225
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	6 cut(s)	88, 126, 164, 197, 208, 300
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	19, 189, 268
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	2 cut(s)	335, 346
StyD4I	CCNGG	3 cut(s)	5, 202, 223
TaiI	ACGT	2 cut(s)	126, 164
TasI	AATT	3 cut(s)	19, 189, 268
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	15, 153
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	2 cut(s)	335, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.