Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018138

Physical Location & Seq

Genomic Coordinates Reverse (-)

63916502 .. 63924287

Gene Structure 7786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCACATCTTTCCCACATGTTTTCCCTCCATTTCTGGGCTCTCACTCTTTAATGGAAGGAGGACCTTTTTAGTCTCAGCGTCTTCAGCCCAAGACCAAGCATGTGTCTGCCTTGCTCCTTCTCCTACTGGGAATCTCCACGTTGGTGGAGCCAGAACTGCCCTCTTCAATTACCTCTTTGCCAGGTCCAATGGAGGGAAGTTTGTTTTTAGAATTGAAGACATGGATTTGGAAAGGTCTACTAAGGAGTCCAAGGAGGCTGTGTTGCAGGATCTCTCTTGGCTTGGTCTTGATTGGGATGAAGGGCCTGGTGTGAATGGAGATTATGGGCCATATCGGCAATTAGAAAGAAATTCTTTGTATAAGCAATATGCTGAGAAGCTTTTAGAGTGTGGTTATGTTTATTGCAGCTTTTGCTCTAGTGAGGTAATTTTTGTTACCTCTTACTCTTATGGCACAAGTACAAGAAGACTGAAAAAAGGAAGTCCTTACACATATAGGTTTTGTGTTCCAAAGGAAGGAAGTCTGAAAATCAATGATCTCATTAGAGGGGAGAACTTGGACACTCTTGGAGATTTTGTAATTATGAGAAGCAATGGGCAACCGGTGTACTATTTTTGTGTCACAGTTGATGATGCTAACATGGCTATCTCACATGTTATTAGAGCAGATGAGCATTTACCAAATACTCTAAGGCATGCATTAATATATAAGGGACTAGGATTTCCAATGCCTTACTTTCCACATGTATCCTTAATTCTTGCACCTGATAGAAGTAAGCTATCAAAAAGGCATGGAGCAACTTCAGTAGGCCAGTTTAGGGAGATGGGCTATCTACCACAGGCAATGGTGAACTATTTGTCACTGTTAGGTTGGGGCGATGGAACTGAAAATGAAATAATTAATCAAATAACAAATAGGTTCAGTTGTCCAATGTTAAATCACACAAACGGTCTCTATAAAATTTTATTTTTGTGGCTTGTCGGACACTTCCTTGAGTTCTATCATTTGCTCAACATTTCCATCAAGGACGTAGTCCCTTTCAAGGAAAGTAGCATTCCTGCAAACAAACACCTTTTGTTCTTCAGCTTTGGAATTCATCTTCCAATGCCCATCCTTGTTGCAAAAGAAACAAACACCTTTTGGTTCCTTTTATTCCTTCTTGTTCTTCTTTTGGATAGCTCCTTTAGGCTTTGCCCTTGCTTTTGGACTTGGTGGAAGAAGAAGGGACAATGTATAAGTCAACTTAATTTCCATGAGAGGATACTCTTATCCAATCACATCAAATGTGAATATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

433

Amino Acids

49.4

Weight (kDa)

8.46

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	38 - 143	9e-35	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	157 - 304	4e-34	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018138)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g00740
rosa_chinensis	RchiOBHm_Chr3g0490481
rosa_laevigata	RLG00000022888
rosa_multiflora	Rmu_sc0000375.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358670
rosa_samantha	Rh1AG237900 Rh3AG293100 Rh3CG327200 Rh4AG027400 Rh5AG387000
rosa_wichuraiana	Rw5G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	3 cut(s)	352, 963, 1095
AcuI	CTGAAG	3 cut(s)	69, 789, 1069
AfaI	GTAC	2 cut(s)	463, 611
AfiI	CCNNNNNNNGG	5 cut(s)	36, 195, 518, 820, 1045
AflIII	ACRYGT	3 cut(s)	17, 655, 745
AgeI	ACCGGT	1 cut(s)	604
AgsI	TTSAA	3 cut(s)	169, 218, 1045
AjnI	CCWGG	2 cut(s)	182, 307
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	5 cut(s)	382, 411, 781, 1089, 1182
AluI	AGCT	5 cut(s)	382, 411, 781, 1089, 1182
Alw26I	GTCTC	2 cut(s)	79, 959
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	3 cut(s)	305, 329, 811
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	3 cut(s)	352, 963, 1095
AseI	ATTAAT	2 cut(s)	704, 903
AsiGI	ACCGGT	1 cut(s)	604
AspS9I	GGNCC	4 cut(s)	63, 186, 305, 329
AsuHPI	GGTGA	1 cut(s)	862
AvaII	GGWCC	2 cut(s)	63, 186
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	3 cut(s)	75, 225, 475
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	4 cut(s)	820, 875, 1031, 1121
BciT130I	CCWGG	2 cut(s)	184, 309
BciVI	GTATCC	2 cut(s)	760, 1257
BcoDI	GTCTC	2 cut(s)	79, 959
BfaI	CTAG	2 cut(s)	420, 719
BfuI	GTATCC	2 cut(s)	760, 1257
BglI	GCCNNNNNGGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	184, 309
Bme18I	GGWCC	2 cut(s)	63, 186
BmgT120I	GGNCC	4 cut(s)	63, 186, 305, 329
BmiI	GGNNCC	2 cut(s)	151, 1148
BmrFI	CCNGG	2 cut(s)	184, 309
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	3 cut(s)	75, 225, 475
BpuEI	CTTGAG	1 cut(s)	1016
BsaI	GGTCTC	1 cut(s)	959
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	604
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 564, 594
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 195, 518, 820, 1045
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	133, 814
Bse3DI	GCAATG	2 cut(s)	601, 852
BseBI	CCWGG	2 cut(s)	184, 309
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	304, 1113
BseLI	CCNNNNNNNGG	5 cut(s)	36, 195, 518, 820, 1045
BseMI	GCAATG	2 cut(s)	601, 852
BseMII	CTCAG	2 cut(s)	90, 366
BseNI	ACTGG	2 cut(s)	133, 814
BseXI	GCAGC	1 cut(s)	420
BshFI	GGCC	3 cut(s)	307, 331, 813
BshTI	ACCGGT	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	3 cut(s)	729, 1022, 1242
BslI	CCNNNNNNNGG	5 cut(s)	36, 195, 518, 820, 1045
BsmAI	GTCTC	2 cut(s)	79, 959
BsmFI	GGGAC	3 cut(s)	729, 1022, 1242
BsmI	GAATGC	1 cut(s)	1056
BsnI	GGCC	3 cut(s)	307, 331, 813
Bso31I	GGTCTC	1 cut(s)	959
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	271, 538
BspANI	GGCC	3 cut(s)	307, 331, 813
BspCNI	CTCAG	2 cut(s)	89, 367
BspLI	GGNNCC	2 cut(s)	151, 1148
BspPI	GGATC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	959
BsrDI	GCAATG	2 cut(s)	601, 852
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	133, 814
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	271, 538
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	184, 309
Bst4CI	ACNGT	3 cut(s)	628, 867, 953
Bst6I	CTCTTC	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	4 cut(s)	76, 243, 375, 692
BstF5I	GGATG	2 cut(s)	304, 1113
BstKTI	GATC	2 cut(s)	274, 541
BstMAI	GTCTC	2 cut(s)	79, 959
BstMBI	GATC	2 cut(s)	271, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 158, 337, 414, 644
BstNI	CCWGG	2 cut(s)	184, 309
BstNSI	RCATGY	5 cut(s)	21, 105, 659, 701, 749
BstSCI	CCNGG	2 cut(s)	182, 307
BstV1I	GCAGC	1 cut(s)	420
BstV2I	GAAGAC	3 cut(s)	75, 225, 475
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	271
BsuI	GTATCC	2 cut(s)	760, 1257
BsuRI	GGCC	3 cut(s)	307, 331, 813
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	2 cut(s)	304, 1113
BtsIMutI	CAGTG	1 cut(s)	863
Cac8I	GCNNGC	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	4 cut(s)	63, 186, 305, 329
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	462, 610
CspAI	ACCGGT	1 cut(s)	604
CviAII	CATG	9 cut(s)	18, 102, 223, 643, 656, 698, 746, 794, 1256
CviQI	GTAC	2 cut(s)	462, 610
DdeI	CTNAG	4 cut(s)	76, 243, 375, 692
DpnI	GATC	2 cut(s)	273, 540
DpnII	GATC	2 cut(s)	271, 538
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	959
Eco47I	GGWCC	2 cut(s)	63, 186
Eco57I	CTGAAG	3 cut(s)	69, 789, 1069
EcoO109I	RGGNCCY	2 cut(s)	63, 305
EcoRI	GAATTC	1 cut(s)	1095
EcoRII	CCWGG	2 cut(s)	182, 307
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	9 cut(s)	21, 105, 226, 646, 659, 701, 749, 797, 1259
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FaqI	GGGAC	3 cut(s)	729, 1022, 1242
FatI	CATG	9 cut(s)	17, 101, 222, 642, 655, 697, 745, 793, 1255
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	2 cut(s)	311, 1100
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	2 cut(s)	420, 719
GluI	GCNGC	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	307, 331, 813
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	9 cut(s)	21, 105, 226, 646, 659, 701, 749, 797, 1259
HincII	GTYRAC	1 cut(s)	1244
HindII	GTYRAC	1 cut(s)	1244
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	2 cut(s)	133, 248
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	862
Hpy166II	GTNNAC	4 cut(s)	240, 610, 853, 1244
Hpy188I	TCNGA	2 cut(s)	528, 986
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	4 cut(s)	240, 610, 853, 1244
HpyAV	CCTTC	6 cut(s)	51, 129, 296, 512, 1169, 1219
HpyCH4III	ACNGT	3 cut(s)	628, 867, 953
HpyCH4IV	ACGT	2 cut(s)	141, 1032
HpyCH4V	TGCA	7 cut(s)	4, 268, 408, 701, 764, 1064, 1124
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 158, 337, 414, 644
HpyF3I	CTNAG	4 cut(s)	76, 243, 375, 692
HpySE526I	ACGT	2 cut(s)	141, 1032
Hsp92II	CATG	9 cut(s)	21, 105, 226, 646, 659, 701, 749, 797, 1259
Kzo9I	GATC	2 cut(s)	271, 538
LmnI	GCTCC	4 cut(s)	121, 149, 797, 1187
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	420, 719
MaeII	ACGT	2 cut(s)	141, 1032
MaeIII	GTNAC	3 cut(s)	436, 622, 861
MalI	GATC	2 cut(s)	273, 540
MboI	GATC	2 cut(s)	271, 538
MboII	GAAGA	9 cut(s)	75, 157, 230, 480, 1075, 1094, 1160, 1231, 1234
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	964
Mph1103I	ATGCAT	1 cut(s)	703
MseI	TTAA	6 cut(s)	51, 704, 755, 903, 938, 1248
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	2 cut(s)	184, 309
Mva1269I	GAATGC	1 cut(s)	1056
MvaI	CCWGG	2 cut(s)	184, 309
MwoI	GCNNNNNNNGC	5 cut(s)	86, 158, 337, 414, 644
NdeII	GATC	2 cut(s)	271, 538
NlaIII	CATG	9 cut(s)	21, 105, 226, 646, 659, 701, 749, 797, 1259
NlaIV	GGNNCC	2 cut(s)	151, 1148
NmuCI	GTSAC	2 cut(s)	622, 861
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	5 cut(s)	21, 105, 659, 701, 749
OliI	CACNNNNGTG	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	701
PciI	ACATGT	3 cut(s)	17, 655, 745
PctI	GAATGC	1 cut(s)	1056
PfeI	GAWTC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	1034
PinAI	ACCGGT	1 cut(s)	604
PkrI	GCNGC	1 cut(s)	410
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	63
PscI	ACATGT	3 cut(s)	17, 655, 745
PshBI	ATTAAT	2 cut(s)	704, 903
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	182, 307
PspGI	CCWGG	2 cut(s)	182, 307
PspN4I	GGNNCC	2 cut(s)	151, 1148
PspPI	GGNCC	4 cut(s)	63, 186, 305, 329
PspPPI	RGGWCCY	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	1034
RsaI	GTAC	2 cut(s)	463, 611
RsaNI	GTAC	2 cut(s)	462, 610
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	6 cut(s)	51, 704, 755, 903, 938, 1248
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	2 cut(s)	271, 538
Sau96I	GGNCC	4 cut(s)	63, 186, 305, 329
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	184, 309
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	625
SinI	GGWCC	2 cut(s)	63, 186
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	995
SmoI	CTYRAG	1 cut(s)	995
SphI	GCATGC	1 cut(s)	701
SspMI	CTAG	2 cut(s)	420, 719
StyD4I	CCNGG	2 cut(s)	182, 307
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	628, 867, 953
TaiI	ACGT	2 cut(s)	144, 1035
TatI	WGTACW	2 cut(s)	461, 609
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	6 cut(s)	51, 704, 755, 903, 938, 1248
Tru9I	TTAA	6 cut(s)	51, 704, 755, 903, 938, 1248
TscAI	CASTG	1 cut(s)	870
TseFI	GTSAC	2 cut(s)	622, 861
TseI	GCWGC	1 cut(s)	408
Tsp45I	GTSAC	2 cut(s)	622, 861
TspDTI	ATGAA	3 cut(s)	315, 909, 1088
TspRI	CASTG	1 cut(s)	870
Tth111I	GACNNNGTC	1 cut(s)	1034
VpaK11BI	GGWCC	2 cut(s)	63, 186
VspI	ATTAAT	2 cut(s)	704, 903
XapI	RAATTY	3 cut(s)	352, 963, 1095
XceI	RCATGY	5 cut(s)	21, 105, 659, 701, 749
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	2 cut(s)	420, 719
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.