Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0018138

Physical Location & Seq

Genomic Coordinates Forward (+)

35464726 .. 35474994

Gene Structure 10269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG293100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAAGGACGACCTTTTCAGTCTCGGCTTCTTCAGCCCAAGACCAAGTTCGTGTCCGCTTTGCTACTTCTCCTACTGGGAATCTCCACGTTGGTGGAGCCAGAACTACCCTCTTCAATTACCTCTTTGCCAGGTCCTAGTGTGAATGGAGATTATGGGTCATATCGGCAATCAGAAAGAAATTCTTTGTACAAGCAATATGCTGAGAAGCTTTTAGAGTGTGGTTATGTTTTTGCTGCTTTTGCTCTAGAACTAGAAAAAATGAAGGAGATTGCAAAGCTGAAGCAACTGCCTCCTGTATACTCAGGAAAGTGCGCCAATGCAACTGATGTAGAAGTACAAGAAGACTGGAAAAAGGAAGTCCTTACACATATAGGTTTTGTGTTCCAAAGGAAGGAAGGAGATGGGCTATCTACCACAGGCAATGGTGAACTATTTGGCACTGTTAGGTTGGGGCGATGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

155

Amino Acids

17.3

Weight (kDa)

7.71

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018138)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g00740
rosa_chinensis	RchiOBHm_Chr3g0490481
rosa_laevigata	RLG00000022888
rosa_multiflora	Rmu_sc0000375.1_g000009
rosa_roxburghii	Rroxscaffold_5G00358670
rosa_samantha	Rh1AG237900 Rh3AG293100 Rh3CG327200 Rh4AG027400 Rh5AG387000
rosa_wichuraiana	Rw5G036410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	17, 302
AfaI	GTAC	2 cut(s)	191, 339
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	211, 280
AluI	AGCT	2 cut(s)	211, 280
Alw26I	GTCTC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	398, 453
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	3 cut(s)	138, 248, 254
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	2 cut(s)	81, 353
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	195, 318
BseNI	ACTGG	2 cut(s)	81, 353
BseXI	GCAGC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	189
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	196, 317
BspLI	GGNNCC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	81, 353
BssNAI	GTATAC	1 cut(s)	301
Bst1107I	GTATAC	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	204, 304
BstHHI	GCGC	1 cut(s)	317
BstMAI	GTCTC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 242
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	351
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstZ17I	GTATAC	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	441
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	190, 338
CviJI	RGCY	6 cut(s)	28, 37, 100, 211, 280, 409
CviKI_1	RGCY	6 cut(s)	28, 37, 100, 211, 280, 409
CviQI	GTAC	2 cut(s)	190, 338
DdeI	CTNAG	2 cut(s)	204, 304
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	17, 302
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	130
FaiI	YATR	7 cut(s)	156, 163, 201, 228, 301, 372, 374
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	3 cut(s)	138, 248, 254
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	1 cut(s)	81
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	2 cut(s)	301, 431
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	248, 306
Hpy8I	GTNNAC	2 cut(s)	301, 431
HpyAV	CCTTC	3 cut(s)	259, 388, 392
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	275, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 242
HpyF3I	CTNAG	2 cut(s)	204, 304
HpySE526I	ACGT	1 cut(s)	89
HspAI	GCGC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	62, 114, 117, 144, 291, 309, 334, 405
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	138, 248, 254
MaeII	ACGT	1 cut(s)	89
MboII	GAAGA	3 cut(s)	23, 105, 356
MluCI	AATT	2 cut(s)	117, 181
MnlI	CCTC	3 cut(s)	121, 133, 303
MslI	CAYNNNNRTG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	34, 242
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	4
OliI	CACNNNNGTG	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
RsaI	GTAC	2 cut(s)	191, 339
RsaNI	GTAC	2 cut(s)	190, 338
RseI	CAYNNNNRTG	1 cut(s)	92
SatI	GCNGC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	8 cut(s)	16, 92, 125, 136, 213, 282, 379, 452
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	117, 181
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	3 cut(s)	138, 248, 254
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	1 cut(s)	92
TasI	AATT	2 cut(s)	117, 181
TatI	WGTACW	2 cut(s)	189, 337
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	3 cut(s)	138, 248, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.