pycom10g01450

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
1493592 .. 1493837
246 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGGGAAAGAGACATGATATGTTTGTTGTAGTAGCGCTATTGCTGCTCGTCTTTCTGGTCGGCCACACTCAAAGCTCAAGAGTACTTCAGAGCAGTCAAGTTTTCAAGGTATTGAAGCCTGCCTCTGGTCATCAGAAACTGCATGAGAGTAGCTTTTTTGCATTCTTACCAAAGGCAACGCCAATTCCACCGTCTGGTCCTTCCAAGGAGCACAATGCTATTGGTTTACAAAGCTCCTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.78

Weight (kDa)

10.29

Isoelectric Point (pI)

67.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76952
fragaria_vesca FvH4_2g14270
malus_domestica MD05G1020400.v1.1
prunus_persica Prupe.8G024400_v2.0.a1
pyrus_communis pycom10g01450
rosa_chinensis RchiOBHm_Chr6g0276561
rosa_laevigata RLG00000013390
rosa_roxburghii Rroxscaffold_7G00192180
rosa_samantha Rh6AG212500 Rh6BG217400 Rh6CG219700 Rh6DG209300
rosa_wichuraiana Rw6G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 84
AfeI AGCGCT 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 125, 194
AgsI TTSAA 2 cut(s) 106, 115
AluBI AGCT 3 cut(s) 75, 153, 234
AluI AGCT 3 cut(s) 75, 153, 234
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 139
Aor51HI AGCGCT 1 cut(s) 36
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 231
AvaII GGWCC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 4
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmcAI AGTACT 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 194
BseDI CCNNGG 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 125, 194
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 125, 194
BsmAI GTCTC 1 cut(s) 4
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 213
BspANI GGCC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 14, 143
CviJI RGCY 5 cut(s) 63, 75, 118, 153, 234
CviKI_1 RGCY 5 cut(s) 63, 75, 118, 153, 234
CviQI GTAC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 197
Eco47III AGCGCT 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 17, 146
FaiI YATR 3 cut(s) 15, 20, 144
FatI CATG 2 cut(s) 13, 142
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 1 cut(s) 63
HhaI GCGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 17, 146
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 90, 135
Hpy188III TCNNGA 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 142, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
Hsp92II CATG 2 cut(s) 17, 146
HspAI GCGC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 208, 239
LpnPI CCDG 4 cut(s) 41, 111, 132, 180
Lsp1109I GCAGC 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 183
MnlI CCTC 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 43
NlaIII CATG 2 cut(s) 17, 146
PctI GAATGC 1 cut(s) 161
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SatI GCNGC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 84
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 77, 111, 155, 236, 244
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 183
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 192
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 82
TseI GCWGC 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.