pycom10g05430

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
5771103 .. 5771903
801 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGACGTGTGATAAATGTTTCCCTGCACACACACACACACATATACATACTTCAAACACAAATTGCAGTACGTATGTAAAAACTCATTATAATCTGAACTTCTTCTTCACTACCTCATTTCGCTTTCTAGTACTGGAAATCATGGAAGATGACAATATGAGAGCATTCGACATGGTGGCGCTAAGAACAAGTCTCCCACAAAACAAGAGAGGGTTGTCAAGGTACTACTCAGGGAAATCGAGATCATTTACGTGCATGGCCGATGTACGAAGCCTCGAAGATCTGAAGAAACCTAAAAATCCCGATGCTAAAAAGAGGAAGAAACATTCTGAGAGGAGGAACTTCCCCGTTCCAGCCTACCCTCCTTATCCTTGTCGAAGAGTTTCTAGCACCACGCAATGTACTGCACCCTGCGTTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.32

Weight (kDa)

9.65

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015084)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 5 cut(s) 70, 132, 224, 267, 403
AfiI CCNNNNNNNGG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 1 cut(s) 54
AjiI CACGTC 1 cut(s) 6
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 1 cut(s) 258
Asp700I GAANNNNTTC 2 cut(s) 101, 382
AspLEI GCGC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 128, 387
BfoI RGCGCY 1 cut(s) 182
BglII AGATCT 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 6
BmsI GCATC 1 cut(s) 295
BsaAI YACGTR 2 cut(s) 72, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 404
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 2 cut(s) 243, 321
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 349
BsgI GTGCAG 2 cut(s) 9, 390
BshFI GGCC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 242, 280
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 242, 322
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 1 cut(s) 138
BssMI GATC 2 cut(s) 242, 280
Bst6I CTCTTC 1 cut(s) 373
BstBAI YACGTR 2 cut(s) 72, 252
BstDEI CTNAG 3 cut(s) 182, 229, 330
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 245, 283
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 242, 280
BstSNI TACGTA 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 260
BtrI CACGTC 1 cut(s) 6
CfoI GCGC 1 cut(s) 181
Csp6I GTAC 5 cut(s) 69, 131, 223, 266, 402
CviAII CATG 3 cut(s) 142, 172, 256
CviJI RGCY 3 cut(s) 260, 273, 356
CviKI_1 RGCY 3 cut(s) 260, 273, 356
CviQI GTAC 5 cut(s) 69, 131, 223, 266, 402
DdeI CTNAG 3 cut(s) 182, 229, 330
DpnI GATC 2 cut(s) 244, 282
DpnII GATC 2 cut(s) 242, 280
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco105I TACGTA 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 305
FaeI CATG 3 cut(s) 145, 175, 259
FaiI YATR 9 cut(s) 42, 44, 48, 75, 90, 143, 158, 173, 257
FatI CATG 3 cut(s) 141, 171, 255
FspBI CTAG 2 cut(s) 128, 387
GlaI GCGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 1 cut(s) 260
HhaI GCGC 1 cut(s) 181
Hin1II CATG 3 cut(s) 145, 175, 259
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 96, 285, 331
Hpy188III TCNNGA 2 cut(s) 240, 302
HpyCH4IV ACGT 3 cut(s) 5, 71, 251
HpyCH4V TGCA 4 cut(s) 26, 66, 255, 407
HpyF3I CTNAG 3 cut(s) 182, 229, 330
HpySE526I ACGT 3 cut(s) 5, 71, 251
Hsp92II CATG 3 cut(s) 145, 175, 259
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 242, 280
LpnPI CCDG 4 cut(s) 36, 119, 216, 366
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 128, 387
MaeII ACGT 3 cut(s) 5, 71, 251
MalI GATC 2 cut(s) 244, 282
MboI GATC 2 cut(s) 242, 280
MboII GAAGA 7 cut(s) 94, 97, 158, 290, 298, 331, 390
MflI RGATCY 1 cut(s) 280
MluCI AATT 1 cut(s) 61
MnlI CCTC 7 cut(s) 124, 203, 284, 309, 327, 330, 372
MroXI GAANNNNTTC 2 cut(s) 101, 382
MslI CAYNNNNRTG 1 cut(s) 250
Mva1269I GAATGC 1 cut(s) 164
NdeII GATC 2 cut(s) 242, 280
NlaIII CATG 3 cut(s) 145, 175, 259
PctI GAATGC 1 cut(s) 164
PdmI GAANNNNTTC 2 cut(s) 101, 382
Ppu21I YACGTR 2 cut(s) 72, 252
PsiI TTATAA 1 cut(s) 90
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 5 cut(s) 70, 132, 224, 267, 403
RsaNI GTAC 5 cut(s) 69, 131, 223, 266, 402
RseI CAYNNNNRTG 1 cut(s) 250
Sau3AI GATC 2 cut(s) 242, 280
ScaI AGTACT 1 cut(s) 132
SetI ASST 6 cut(s) 8, 74, 116, 224, 254, 295
SfaNI GCATC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 250
SnaBI TACGTA 1 cut(s) 72
Sse9I AATT 1 cut(s) 61
SspMI CTAG 2 cut(s) 128, 387
TaiI ACGT 3 cut(s) 8, 74, 254
TaqI TCGA 4 cut(s) 168, 239, 276, 376
TasI AATT 1 cut(s) 61
TatI WGTACW 2 cut(s) 130, 401
XmnI GAANNNNTTC 2 cut(s) 101, 382
XspI CTAG 2 cut(s) 128, 387
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.