Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008802

Physical Location & Seq

Genomic Coordinates Reverse (-)

11496940 .. 11497953

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGCAATTCAAGTAGCTTGGTTGCAGAGGCAGTGTGGAAGGCGATTGAGTCAACTCGTTCAGTCACCGACGATCAGCTCTCCGTCCTGCATTTCTTGTTTGGGAAGAACTTGGAAAGAGCAACAAGGATAGTGGATCAGAGAGGTGTGAAGAGGGTTTTGGGTGAGCCCAGTGGTCGTTCCATCTTTCAGGTCGTCGGAGAATCGCAGAGGAAGGAGGAGTACTTGTGTTTTGCTGAGCAGTATTGTGCTTGTTATTCATTCTTCTATGACATTGTGAACAGAGGAGAGCAGCTTTGTTGTAAGCATCAGTTAGCTGCAAGACTTGCTGCATCATTGGGAGCATGCATTGAAGTTAAGGTCTCTGATGAGCAGCTGGCTTTACTGCTTTCCAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.87

Weight (kDa)

6.72

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33925 AT4G33925
fragaria_vesca	FvH4_2g04570
malus_domestica	MD00G1205200.v1.1 MD10G1101800.v1.1
prunus_persica	Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1 Prupe.8G139500_v2.0.a1
pyrus_communis	pycom10g08720
rosa_chinensis	RchiOBHm_Chr6g0254151
rosa_laevigata	RLG00000014939
rosa_multiflora	Rmu_sc0000010.1_g000027 Rmu_sc0003711.1_g000002
rosa_roxburghii	Rroxscaffold_7G00211120
rosa_rugosa	Rorug05G0550100 Rorug05G0550200
rosa_samantha	Rh6AG066600 Rh6BG059700 Rh6CG059400 Rh6DG056300 Rh6DG056600
rosa_wichuraiana	Rw6G005850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	12, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	5 cut(s)	18, 79, 295, 317, 376
AluI	AGCT	5 cut(s)	18, 79, 295, 317, 376
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	292, 317, 329, 373
AsuHPI	GGTGA	2 cut(s)	58, 176
BanII	GRGCYC	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbvI	GCAGC	4 cut(s)	304, 304, 316, 385
BccI	CCATC	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	367
BisI	GCNGC	4 cut(s)	293, 318, 330, 374
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	4 cut(s)	294, 319, 331, 375
BmcAI	AGTACT	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	2 cut(s)	316, 341
BmuI	ACTGGG	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse1I	ACTGG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	233, 300
BseXI	GCAGC	4 cut(s)	304, 304, 316, 385
BsmAI	GTCTC	1 cut(s)	367
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	73, 136
Bsp1720I	GCTNAGC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	229
BspPI	GGATC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	73, 136
Bst6I	CTCTTC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	346, 378
BstDEI	CTNAG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	76, 139
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	73, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	348
BstV1I	GCAGC	4 cut(s)	304, 304, 316, 385
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	39, 178
Cac8I	GCNNGC	2 cut(s)	346, 378
Csp6I	GTAC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	7 cut(s)	18, 79, 169, 295, 317, 376, 380
CviKI_1	RGCY	7 cut(s)	18, 79, 169, 295, 317, 376, 380
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	75, 138
DpnII	GATC	2 cut(s)	73, 136
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	1 cut(s)	348
FaiI	YATR	2 cut(s)	270, 346
FatI	CATG	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	293, 318, 330, 374
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	293, 318, 330, 374
GluI	GCNGC	4 cut(s)	293, 318, 330, 374
Hin1II	CATG	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	50, 203
HphI	GGTGA	2 cut(s)	58, 176
Hpy166II	GTNNAC	2 cut(s)	54, 280
Hpy188I	TCNGA	4 cut(s)	141, 200, 367, 401
Hpy8I	GTNNAC	2 cut(s)	54, 280
Hpy99I	CGWCG	2 cut(s)	74, 200
HpyAV	CCTTC	2 cut(s)	34, 208
HpyCH4V	TGCA	5 cut(s)	26, 91, 320, 332, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	73, 136
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	4 cut(s)	101, 176, 184, 362
Lsp1109I	GCAGC	4 cut(s)	304, 304, 316, 385
LweI	GCATC	2 cut(s)	316, 341
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	75, 138
MboI	GATC	2 cut(s)	73, 136
MboII	GAAGA	3 cut(s)	118, 163, 256
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	6 cut(s)	22, 137, 147, 204, 211, 278
Mph1103I	ATGCAT	1 cut(s)	350
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	2 cut(s)	73, 136
NlaIII	CATG	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	350
NspI	RCATGY	1 cut(s)	348
PaeI	GCATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	294, 319, 331, 375
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	293, 318, 330, 374
Sau3AI	GATC	2 cut(s)	73, 136
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	8 cut(s)	20, 81, 148, 195, 297, 319, 363, 378
SfaNI	GCATC	2 cut(s)	316, 341
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	7
TasI	AATT	1 cut(s)	7
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	39, 178
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	4 cut(s)	292, 317, 329, 373
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	249
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	39, 178
XceI	RCATGY	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.