Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0020443

Physical Location & Seq

Genomic Coordinates Reverse (-)

15360187 .. 15362352

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCAACTCGTTTCGAAGCCGGAGCAATTTGATGTGATGGTCACTCCCAATCTTTATGGAAATCTAGTGGCAAATACGGCAGCTGGTATTGCTGGAGGCACTGGTGTCATGCCAGGAGGAAATGTGGGTGCTGATCACGCTGTTTTTGAGCAAGGTGCTTCAGCAGGAAATGTCGGAAACGAAAAGTTATGGGAGCAAAAGAAGGCCAATCCAGTGGCTTTGCTTCTGTCATCAGCAATGATGTTGAGGCATCTCCAGTTTCCTTCATTTGCTGATCGACTTGAAACAGCGGTGAAACGTGTAATCTCAGAAGGCAAGTACCGGACAAAAGATCTCGGTGGAGTCAGCAGCACTCAAGAGGTTGTTGATGCCGTTATTGCTAACCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009987 GO:0015980 GO:0016999 GO:0017144 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

131

Amino Acids

13.69

Weight (kDa)

5.63

Isoelectric Point (pI)

24.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020443)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g11780 pycom15g20810
rosa_chinensis	RchiOBHm_Chr6g0280491
rosa_multiflora	Rmu_sc0004211.1_g000030
rosa_samantha	Rh6AG243900 Rh6BG246600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	112, 384
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	80, 348
AsuHPI	GGTGA	1 cut(s)	304
AsuII	TTCGAA	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	92, 360
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	2 cut(s)	93, 356
BciT130I	CCWGG	2 cut(s)	114, 386
BclI	TGATCA	1 cut(s)	133
BfaI	CTAG	1 cut(s)	65
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	2 cut(s)	81, 349
BlsI	GCNGC	2 cut(s)	82, 350
Bme1390I	CCNGG	2 cut(s)	114, 386
BmrFI	CCNGG	2 cut(s)	114, 386
BmsI	GCATC	2 cut(s)	259, 358
BpmI	CTGGAG	2 cut(s)	114, 239
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse1I	ACTGG	3 cut(s)	106, 212, 256
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	114, 386
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	106, 212, 256
BseXI	GCAGC	2 cut(s)	92, 360
BshFI	GGCC	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	20, 322
BsnI	GGCC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	133, 274, 331
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	320
BspT104I	TTCGAA	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	106, 212, 256
BssMI	GATC	3 cut(s)	133, 274, 331
Bst2UI	CCWGG	2 cut(s)	114, 386
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	136, 277, 334
BstMBI	GATC	3 cut(s)	133, 274, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 89, 137, 377
BstNI	CCWGG	2 cut(s)	114, 386
BstSCI	CCNGG	2 cut(s)	112, 384
BstV1I	GCAGC	2 cut(s)	92, 360
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	99, 219
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	4 cut(s)	19, 83, 206, 218
CviKI_1	RGCY	4 cut(s)	19, 83, 206, 218
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	3 cut(s)	135, 276, 333
DpnII	GATC	3 cut(s)	133, 274, 331
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	112, 384
FaeI	CATG	1 cut(s)	112
FaiI	YATR	3 cut(s)	57, 110, 190
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	81, 349
Fsp4HI	GCNGC	2 cut(s)	81, 349
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	81, 349
GsuI	CTGGAG	2 cut(s)	114, 239
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	20, 322
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	20, 322
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	176, 310
Hpy188III	TCNNGA	1 cut(s)	356
HpyAV	CCTTC	3 cut(s)	196, 273, 305
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 89, 137, 377
HpyF3I	CTNAG	1 cut(s)	307
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	133, 274, 331
LmnI	GCTCC	2 cut(s)	22, 193
Lsp1109I	GCAGC	2 cut(s)	92, 360
LweI	GCATC	2 cut(s)	259, 358
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	135, 276, 333
MboI	GATC	3 cut(s)	133, 274, 331
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	4 cut(s)	89, 110, 240, 352
MspA1I	CMGCKG	2 cut(s)	83, 290
MspI	CCGG	2 cut(s)	20, 322
MspR9I	CCNGG	2 cut(s)	114, 386
MvaI	CCWGG	2 cut(s)	114, 386
MwoI	GCNNNNNNNGC	4 cut(s)	77, 89, 137, 377
NdeII	GATC	3 cut(s)	133, 274, 331
NlaIII	CATG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	82, 350
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	112, 384
PspGI	CCWGG	2 cut(s)	112, 384
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SatI	GCNGC	2 cut(s)	81, 349
Sau3AI	GATC	3 cut(s)	133, 274, 331
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	2 cut(s)	114, 386
SetI	ASST	5 cut(s)	85, 157, 301, 363, 387
SfaNI	GCATC	2 cut(s)	259, 358
SfuI	TTCGAA	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	112, 384
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	14, 277
TasI	AATT	1 cut(s)	26
TscAI	CASTG	2 cut(s)	106, 219
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	80, 348
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	106, 219
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.