Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0020443

Physical Location & Seq

Genomic Coordinates Reverse (-)

43271438 .. 43272272

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCTTGGAAATTTGGGTGCTGATCATGCTGTTTTTGAGCAAGGTGCTTCAGCAGCAAATGTAGGGAATGAAAAGCTACGGGAGCAAAAGACTGCCAATCCAGTTGCATTGCTCCTGTCATCAGCCATGATGTTGAGGCATCTCCAGTTTCCCTCATTTGCTGATCGACTTGAAACAGCCGTGAAACGTGTAATTTCAGAAGGCAAATACCGTAGCAAAGATCTTGGTGGAGTGCTACCCAAGAGGTCGTTGACGCCGTTATTTCTCATCTGGACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009987 GO:0015980 GO:0016999 GO:0017144 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

93

Amino Acids

10.19

Weight (kDa)

9.6

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	28 - 79	7.3e-11	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020443)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g11780 pycom15g20810
rosa_chinensis	RchiOBHm_Chr6g0280491
rosa_multiflora	Rmu_sc0004211.1_g000030
rosa_samantha	Rh6AG243900 Rh6BG246600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	65
BceAI	ACGGC	2 cut(s)	164, 241
BclI	TGATCA	1 cut(s)	22
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	101, 145
Bse3DI	GCAATG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	101, 145
BseXI	GCAGC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	22, 163, 220
BsrDI	GCAATG	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	101, 145
BssMI	GATC	3 cut(s)	22, 163, 220
BssNI	GRCGYC	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	25, 166, 223
BstMBI	GATC	3 cut(s)	22, 163, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 53, 82
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
CseI	GACGC	1 cut(s)	262
CviAII	CATG	2 cut(s)	26, 127
CviJI	RGCY	3 cut(s)	76, 125, 179
CviKI_1	RGCY	3 cut(s)	76, 125, 179
DpnI	GATC	3 cut(s)	24, 165, 222
DpnII	GATC	3 cut(s)	22, 163, 220
Eco57I	CTGAAG	1 cut(s)	33
FaeI	CATG	2 cut(s)	29, 130
FaiI	YATR	2 cut(s)	27, 128
FatI	CATG	2 cut(s)	25, 126
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	29, 130
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 53, 82
HpySE526I	ACGT	1 cut(s)	187
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	29, 130
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	22, 163, 220
LmnI	GCTCC	2 cut(s)	82, 117
LpnPI	CCDG	4 cut(s)	114, 128, 158, 256
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	187
MalI	GATC	3 cut(s)	24, 165, 222
MboI	GATC	3 cut(s)	22, 163, 220
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	2 cut(s)	10, 192
MnlI	CCTC	3 cut(s)	129, 163, 237
MwoI	GCNNNNNNNGC	3 cut(s)	26, 53, 82
NdeII	GATC	3 cut(s)	22, 163, 220
NlaIII	CATG	2 cut(s)	29, 130
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	220
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	3 cut(s)	22, 163, 220
SetI	ASST	4 cut(s)	46, 78, 190, 248
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	2 cut(s)	10, 192
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	166
TasI	AATT	2 cut(s)	10, 192
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	84
XapI	RAATTY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.