Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004211.1

Orthogroup ID

OG0020443

Physical Location & Seq

Genomic Coordinates Reverse (-)

119392 .. 121066

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004211.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgaggtcagcagcaggagcggatgaggccgtcatcgtcgtcccaggcgtcgggagtcgtgagatgaaggactggacgaaatggatgccgaagaagcaggagagttttggggccactcctaatctttatggaaatctagtagcaaatacagcagctggtattgctggaggcactggtgtcatgccaggacaaggtgcttcagcagcaaatgtagggaatgaaaagctacgggagcaaaagactgccaatccagttgcattgctcctgtcatcagccatgatgttgaggcatctccagtttccctcatttgctgatcgacttgaaacagccgtgaaacgtgtaatttcagaaggcaaataccgtagcaaagatcttggtggagtgctacccaagaggtcgttgacgccgttatttctcatctggactgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006102 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009987 GO:0015980 GO:0016999 GO:0017144 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00020 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

143

Amino Acids

15.27

Weight (kDa)

9.85

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020443)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g11780 pycom15g20810
rosa_chinensis	RchiOBHm_Chr6g0280491
rosa_multiflora	Rmu_sc0004211.1_g000030
rosa_samantha	Rh6AG243900 Rh6BG246600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AciI	CCGC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	2 cut(s)	48, 404
AfiI	CCNNNNNNNGG	2 cut(s)	50, 191
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	43, 184
AluBI	AGCT	2 cut(s)	155, 226
AluI	AGCT	2 cut(s)	155, 226
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	27, 111
ApeKI	GCWGC	3 cut(s)	11, 152, 203
AspS9I	GGNCC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	23, 164, 215
BceAI	ACGGC	3 cut(s)	14, 314, 391
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	2 cut(s)	45, 186
BfaI	CTAG	1 cut(s)	137
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	3 cut(s)	12, 153, 204
BlsI	GCNGC	3 cut(s)	13, 154, 205
Bme1390I	CCNGG	2 cut(s)	45, 186
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	45, 186
BmsI	GCATC	2 cut(s)	75, 298
BpmI	CTGGAG	2 cut(s)	186, 278
BsaHI	GRCGYC	2 cut(s)	48, 404
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 191
Bse1I	ACTGG	4 cut(s)	77, 178, 251, 295
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	45, 186
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	2 cut(s)	28, 90
BseLI	CCNNNNNNNGG	2 cut(s)	50, 191
BseMI	GCAATG	1 cut(s)	257
BseNI	ACTGG	4 cut(s)	77, 178, 251, 295
BseXI	GCAGC	3 cut(s)	23, 164, 215
BshFI	GGCC	2 cut(s)	29, 113
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	50, 191
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	29, 113
Bsp143I	GATC	2 cut(s)	313, 370
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	29, 113
BspLI	GGNNCC	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	257
BsrI	ACTGG	4 cut(s)	77, 178, 251, 295
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	313, 370
BssNI	GRCGYC	2 cut(s)	48, 404
Bst2UI	CCWGG	2 cut(s)	45, 186
Bst4CI	ACNGT	1 cut(s)	362
BstACI	GRCGYC	2 cut(s)	48, 404
BstF5I	GGATG	2 cut(s)	28, 90
BstKTI	GATC	2 cut(s)	316, 373
BstMBI	GATC	2 cut(s)	313, 370
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 26, 94, 149, 161, 203, 232
BstNI	CCWGG	2 cut(s)	45, 186
BstSCI	CCNGG	2 cut(s)	43, 184
BstV1I	GCAGC	3 cut(s)	23, 164, 215
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	29, 113
BtsCI	GGATG	2 cut(s)	28, 90
BtsIMutI	CAGTG	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	2 cut(s)	37, 412
CviAII	CATG	2 cut(s)	181, 277
CviJI	RGCY	6 cut(s)	29, 113, 155, 226, 275, 329
CviKI_1	RGCY	6 cut(s)	29, 113, 155, 226, 275, 329
DpnI	GATC	2 cut(s)	315, 372
DpnII	GATC	2 cut(s)	313, 370
Eco57I	CTGAAG	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	43, 184
FaeI	CATG	2 cut(s)	184, 280
FaiI	YATR	3 cut(s)	129, 182, 278
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	180, 276
Fnu4HI	GCNGC	3 cut(s)	12, 153, 204
FokI	GGATG	2 cut(s)	35, 97
Fsp4HI	GCNGC	3 cut(s)	12, 153, 204
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	3 cut(s)	12, 153, 204
GsuI	CTGGAG	2 cut(s)	186, 278
HaeIII	GGCC	2 cut(s)	29, 113
HgaI	GACGC	2 cut(s)	37, 412
Hin1I	GRCGYC	2 cut(s)	48, 404
Hin1II	CATG	2 cut(s)	184, 280
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	3 cut(s)	52, 59, 421
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	2 cut(s)	41, 53
HpyAV	CCTTC	2 cut(s)	61, 344
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 26, 94, 149, 161, 203, 232
HpySE526I	ACGT	1 cut(s)	337
Hsp92I	GRCGYC	2 cut(s)	48, 404
Hsp92II	CATG	2 cut(s)	184, 280
Kzo9I	GATC	2 cut(s)	313, 370
LmnI	GCTCC	3 cut(s)	17, 232, 267
Lsp1109I	GCAGC	3 cut(s)	23, 164, 215
LweI	GCATC	2 cut(s)	75, 298
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	337
MalI	GATC	2 cut(s)	315, 372
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	313, 370
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	5 cut(s)	19, 161, 279, 313, 387
MspA1I	CMGCKG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	45, 186
MvaI	CCWGG	2 cut(s)	45, 186
MwoI	GCNNNNNNNGC	7 cut(s)	17, 26, 94, 149, 161, 203, 232
NdeII	GATC	2 cut(s)	313, 370
NlaIII	CATG	2 cut(s)	184, 280
NlaIV	GGNNCC	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 404
PkrI	GCNGC	3 cut(s)	13, 154, 205
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	43, 184
PspGI	CCWGG	2 cut(s)	43, 184
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	155
SatI	GCNGC	3 cut(s)	12, 153, 204
Sau3AI	GATC	2 cut(s)	313, 370
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	45, 186
SetI	ASST	6 cut(s)	8, 157, 196, 228, 340, 398
SfaNI	GCATC	2 cut(s)	75, 298
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	43, 184
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	316
TasI	AATT	1 cut(s)	342
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	11, 152, 203
TspDTI	ATGAA	2 cut(s)	80, 234
TspRI	CASTG	1 cut(s)	178
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.