Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011872

Physical Location & Seq

Genomic Coordinates Reverse (-)

18543333 .. 18546732

Gene Structure 3400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTTAAAGGGTTTGTTAAAACAAGGGAATCAAGTGGAAGGAGGAAATTTGTCCAGACTTTCTTTCTGGCTCCCCAGGACAAAGGTTACTTTGTTCTCAATGATATGCTTCAGTTCATTGAGGATGAAGTTGTATTCCAACATCCTGAACCCATACAGTCAGAAGGCAGATTTGATATGCAACCAAGTTCTTCTAGCCCCCTTCCAGAACCACCAGTTTCTGACTATGTCTATGAGGAAGAACCCAGGGAGTACGTGAACTCCGTTGATGTAGAAGATGATCCAATTGATAAGTATAGTCTCCCAGAACAACAGGTGCAGCACGATTTTGAGACTGAAGTGGTGGTGGAAGAAACTCCTGTGGAGGAGACATATTCGTCGTTTCAAAGTGTGGTAAACAATGTGCAAGACGCACCTGCTGCTGCTGTCGAGGAACCGGTGGGAGAGCCTCAAAAGAAAACTTATGCTTCCATATTGCGGGTTGCTAAAGGACTGTCTGCACCAGCTGTAGCTCCACAACCTTATAGTAGAAGTGCTCAAACTTCGTCAGAGTGGAATTACACACCTCAGCCAGCTGTTGAACAATCCAACTCTGCTCAGTCATTTGTGCCTGAGTCTGGGGCAGAAGCAACAGAGGAAGGTTATGCAGTGGAGGAAGAAGGTGAACTTCTGAAATCTGTCTATGTAAGAAATTTGCCTCCTACGGTTACTGAAGATGAGATTGAGGAGGAGTTTAAAAACTTTGGTCAAATTAAACCTGATGGAGTCTTTGTTAGAGCTCGCAAGGAAATTGGAGTCTGCTACGCTTTTGTTGAATATGAAGACTTTGCCAGTGTTCACAATGCACTTAAGGCGTCTCCAATTCATTTAGCTGGAAGGCAAGTATACATTGAGGAGCGGAGACCAAACAGCGCTGGAGCAGCAGCTCGAGGAAGAGGAAGGGGCAGGGGCAGAGGAGGTTACCAAACTGACGCCACAAGGGGGCGTTTTGGTGGCCGGAGTTCAGGCAGGGGTGGTTACCAGGATGGAGATTACAACAGACCGAGGGGCAATGGTTTCCATCAGCGTGGCACACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

360

Amino Acids

40.01

Weight (kDa)

4.84

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	1 - 39	5.7e-10	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	227 - 285	3.3e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43960 AT5G43960
fragaria_vesca	FvH4_2g20540 FvH4_2g20540
malus_domestica	MD05G1189200.v1.1
prunus_persica	Prupe.8G215800_v2.0.a1
pyrus_communis	pycom05g17380 pycom10g11630 pycom10g15260
rosa_chinensis	RchiOBHm_Chr6g0286701
rosa_laevigata	RLG00000012551
rosa_multiflora	Rmu_sc0000560.1_g000014 Rmu_sc0007546.1_g000003
rosa_roxburghii	Rroxscaffold_7G00182100
rosa_rugosa	Rorug06G0182000
rosa_samantha	Rh6CG298500 Rh6DG290500 Rh6DG447300
rosa_wichuraiana	Rw6G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
AasI	GACNNNNNNGTC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	885
AciI	CCGC	2 cut(s)	478, 898
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	994
AcsI	RAATTY	2 cut(s)	47, 691
AcuI	CTGAAG	3 cut(s)	95, 357, 732
AcyI	GRCGYC	2 cut(s)	854, 972
AfaI	GTAC	1 cut(s)	254
AfeI	AGCGCT	1 cut(s)	913
AfiI	CCNNNNNNNGG	3 cut(s)	477, 617, 981
AflII	CTTAAG	1 cut(s)	848
AgeI	ACCGGT	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	386, 581, 815
AjnI	CCWGG	3 cut(s)	75, 245, 1020
AluBI	AGCT	6 cut(s)	506, 512, 575, 779, 872, 926
AluI	AGCT	6 cut(s)	506, 512, 575, 779, 872, 926
Alw21I	GWGCWC	2 cut(s)	538, 781
Alw26I	GTCTC	5 cut(s)	305, 326, 362, 861, 895
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	927
Aor51HI	AGCGCT	1 cut(s)	913
AoxI	GGCC	1 cut(s)	994
ApeKI	GCWGC	5 cut(s)	319, 419, 422, 920, 923
ApoI	RAATTY	2 cut(s)	47, 691
AsiGI	ACCGGT	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	914
AsuHPI	GGTGA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	2 cut(s)	538, 781
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	5 cut(s)	331, 406, 409, 932, 935
BccI	CCATC	3 cut(s)	755, 1019, 1068
BciT130I	CCWGG	3 cut(s)	77, 247, 1022
BcoDI	GTCTC	5 cut(s)	305, 326, 362, 861, 895
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	915
BfrI	CTTAAG	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	5 cut(s)	320, 420, 423, 921, 924
BlsI	GCNGC	5 cut(s)	321, 421, 424, 922, 925
Bme1390I	CCNGG	3 cut(s)	77, 247, 1022
BmeT110I	CYCGRG	1 cut(s)	927
BmiI	GGNNCC	2 cut(s)	72, 435
BmrFI	CCNGG	3 cut(s)	77, 247, 1022
BpiI	GAAGAC	1 cut(s)	828
BpmI	CTGGAG	1 cut(s)	936
Bpu10I	CCTNAGC	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	256
BsaHI	GRCGYC	2 cut(s)	854, 972
BsaI	GGTCTC	1 cut(s)	895
BsaJI	CCNNGG	4 cut(s)	75, 245, 246, 1043
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 756, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	477, 617, 981
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	215, 831
Bse3DI	GCAATG	1 cut(s)	1057
BseBI	CCWGG	3 cut(s)	77, 247, 1022
BseDI	CCNNGG	4 cut(s)	75, 245, 246, 1043
BseGI	GGATG	3 cut(s)	130, 142, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	477, 617, 981
BseMI	GCAATG	1 cut(s)	1057
BseMII	CTCAG	3 cut(s)	581, 603, 611
BseNI	ACTGG	2 cut(s)	215, 831
BseRI	GAGGAG	5 cut(s)	380, 740, 743, 908, 969
BseXI	GCAGC	5 cut(s)	331, 406, 409, 932, 935
BsgI	GTGCAG	2 cut(s)	338, 483
BshFI	GGCC	1 cut(s)	996
BshTI	ACCGGT	1 cut(s)	436
BsiHKAI	GWGCWC	2 cut(s)	538, 781
BsiHKCI	CYCGRG	1 cut(s)	927
BsiSI	CCGG	2 cut(s)	437, 997
BslI	CCNNNNNNNGG	3 cut(s)	477, 617, 981
BsmAI	GTCTC	5 cut(s)	305, 326, 362, 861, 895
BsmBI	CGTCTC	1 cut(s)	861
BsnI	GGCC	1 cut(s)	996
Bso31I	GGTCTC	1 cut(s)	895
BsoBI	CYCGRG	1 cut(s)	927
Bsp1286I	GDGCHC	2 cut(s)	538, 781
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	2 cut(s)	478, 898
BspANI	GGCC	1 cut(s)	996
BspCNI	CTCAG	3 cut(s)	580, 604, 610
BspLI	GGNNCC	2 cut(s)	72, 435
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	848
BspTNI	GGTCTC	1 cut(s)	895
BsrBI	CCGCTC	1 cut(s)	898
BsrDI	GCAATG	1 cut(s)	1057
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	215, 831
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	75, 245, 246, 1043
BssMI	GATC	1 cut(s)	280
BssNAI	GTATAC	1 cut(s)	886
BssNI	GRCGYC	2 cut(s)	854, 972
Bst1107I	GTATAC	1 cut(s)	886
Bst2UI	CCWGG	3 cut(s)	77, 247, 1022
Bst4CI	ACNGT	3 cut(s)	159, 495, 706
Bst6I	CTCTTC	1 cut(s)	928
BstACI	GRCGYC	2 cut(s)	854, 972
BstAFI	CTTAAG	1 cut(s)	848
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	573, 781
BstDEI	CTNAG	3 cut(s)	567, 597, 612
BstEII	GGTNACC	2 cut(s)	959, 1016
BstF5I	GGATG	3 cut(s)	130, 142, 1030
BstH2I	RGCGCY	1 cut(s)	915
BstHHI	GCGC	1 cut(s)	914
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	5 cut(s)	305, 326, 362, 861, 895
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 851, 920
BstNI	CCWGG	3 cut(s)	77, 247, 1022
BstPI	GGTNACC	2 cut(s)	959, 1016
BstSCI	CCNGG	3 cut(s)	75, 245, 1020
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	5 cut(s)	331, 406, 409, 932, 935
BstV2I	GAAGAC	1 cut(s)	828
BstXI	CCANNNNNNTGG	1 cut(s)	1067
BstZ17I	GTATAC	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	996
BtsCI	GGATG	3 cut(s)	130, 142, 1030
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	654, 838
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	573, 781
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	914
Cfr10I	RCCGGY	1 cut(s)	436
CseI	GACGC	3 cut(s)	419, 843, 980
Csp6I	GTAC	1 cut(s)	253
CspAI	ACCGGT	1 cut(s)	436
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	567, 597, 612
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraI	TTTAAA	1 cut(s)	736
DrdI	GACNNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	994
Eam1104I	CTCTTC	1 cut(s)	928
EarI	CTCTTC	1 cut(s)	928
Ecl136II	GAGCTC	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	895
Eco47III	AGCGCT	1 cut(s)	913
Eco53kI	GAGCTC	1 cut(s)	779
Eco57I	CTGAAG	3 cut(s)	95, 357, 732
Eco88I	CYCGRG	1 cut(s)	927
Eco91I	GGTNACC	2 cut(s)	959, 1016
EcoICRI	GAGCTC	1 cut(s)	779
EcoO65I	GGTNACC	2 cut(s)	959, 1016
EcoRII	CCWGG	3 cut(s)	75, 245, 1020
EcoT38I	GRGCYC	1 cut(s)	781
Esp3I	CGTCTC	1 cut(s)	861
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FauI	CCCGC	1 cut(s)	471
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	5 cut(s)	320, 420, 423, 921, 924
FokI	GGATG	3 cut(s)	129, 137, 1037
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	5 cut(s)	320, 420, 423, 921, 924
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	913
GluI	GCNGC	5 cut(s)	320, 420, 423, 921, 924
GsuI	CTGGAG	1 cut(s)	936
HaeII	RGCGCY	1 cut(s)	915
HaeIII	GGCC	1 cut(s)	996
HapII	CCGG	2 cut(s)	437, 997
HgaI	GACGC	3 cut(s)	419, 843, 980
HhaI	GCGC	1 cut(s)	914
Hin1I	GRCGYC	2 cut(s)	854, 972
Hin6I	GCGC	1 cut(s)	912
HinP1I	GCGC	1 cut(s)	912
HinfI	GANTC	4 cut(s)	29, 614, 765, 795
HpaII	CCGG	2 cut(s)	437, 997
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	5 cut(s)	259, 397, 665, 838, 886
Hpy188I	TCNGA	4 cut(s)	163, 223, 550, 672
Hpy188III	TCNNGA	3 cut(s)	55, 146, 206
Hpy8I	GTNNAC	5 cut(s)	259, 397, 665, 838, 886
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	7 cut(s)	33, 158, 212, 632, 653, 870, 933
HpyCH4III	ACNGT	3 cut(s)	159, 495, 706
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	181, 319, 406, 500, 647, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 851, 920
HpyF3I	CTNAG	3 cut(s)	567, 597, 612
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	2 cut(s)	854, 972
HspAI	GCGC	1 cut(s)	912
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	4 cut(s)	76, 517, 895, 917
Lsp1109I	GCAGC	5 cut(s)	331, 406, 409, 932, 935
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	4 cut(s)	86, 706, 959, 1016
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	898
MboI	GATC	1 cut(s)	280
MboII	GAAGA	8 cut(s)	183, 251, 287, 362, 668, 725, 833, 945
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	538, 781
MluCI	AATT	7 cut(s)	47, 285, 556, 691, 750, 789, 861
MlyI	GAGTC	3 cut(s)	623, 774, 804
MmeI	TCCRAC	2 cut(s)	163, 612
MseI	TTAA	5 cut(s)	6, 18, 735, 753, 849
MslI	CAYNNNNRTG	1 cut(s)	1065
MspA1I	CMGCKG	2 cut(s)	506, 575
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	2 cut(s)	437, 997
MspR9I	CCNGG	3 cut(s)	77, 247, 1022
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	3 cut(s)	77, 247, 1022
MwoI	GCNNNNNNNGC	3 cut(s)	419, 851, 920
NdeII	GATC	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	72, 435
PaeR7I	CTCGAG	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	424
PasI	CCCWGGG	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	29
PflFI	GACNNNGTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	436
PkrI	GCNGC	5 cut(s)	321, 421, 424, 922, 925
PleI	GAGTC	3 cut(s)	622, 773, 803
PpsI	GAGTC	3 cut(s)	622, 773, 803
Ppu21I	YACGTR	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	781
Psp6I	CCWGG	3 cut(s)	75, 245, 1020
PspEI	GGTNACC	2 cut(s)	959, 1016
PspGI	CCWGG	3 cut(s)	75, 245, 1020
PspN4I	GGNNCC	2 cut(s)	72, 435
PspXI	VCTCGAGB	1 cut(s)	927
PstNI	CAGNNNCTG	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	227
PvuII	CAGCTG	2 cut(s)	506, 575
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	1065
SacI	GAGCTC	1 cut(s)	781
SaqAI	TTAA	5 cut(s)	6, 18, 735, 753, 849
SatI	GCNGC	5 cut(s)	320, 420, 423, 921, 924
Sau3AI	GATC	1 cut(s)	280
SchI	GAGTC	3 cut(s)	623, 774, 804
ScrFI	CCNGG	3 cut(s)	77, 247, 1022
SduI	GDGCHC	2 cut(s)	538, 781
SfcI	CTRYAG	1 cut(s)	507
Sfr274I	CTCGAG	1 cut(s)	927
SlaI	CTCGAG	1 cut(s)	927
SmiMI	CAYNNNNRTG	1 cut(s)	1065
SmlI	CTYRAG	2 cut(s)	848, 927
SmoI	CTYRAG	2 cut(s)	848, 927
Sse9I	AATT	7 cut(s)	47, 285, 556, 691, 750, 789, 861
SsiI	CCGC	2 cut(s)	478, 898
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	781
StyD4I	CCNGG	3 cut(s)	75, 245, 1020
TaaI	ACNGT	3 cut(s)	159, 495, 706
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	429, 928
TaqII	GACCGA	1 cut(s)	1057
TasI	AATT	7 cut(s)	47, 285, 556, 691, 750, 789, 861
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	5 cut(s)	6, 18, 735, 753, 849
Tru9I	TTAA	5 cut(s)	6, 18, 735, 753, 849
TscAI	CASTG	2 cut(s)	654, 838
TseI	GCWGC	5 cut(s)	319, 419, 422, 920, 923
TspDTI	ATGAA	4 cut(s)	106, 141, 834, 854
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	654, 838
Tth111I	GACNNNGTC	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	848
XapI	RAATTY	2 cut(s)	47, 691
XhoI	CTCGAG	1 cut(s)	927
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.