Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013522

Physical Location & Seq

Genomic Coordinates Reverse (-)

19254889 .. 19258862

Gene Structure 3974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGATGTTCGGTAGGTTGAAGGGTGTGACGTCTCTTGGCATTTTAAAGTGGAAAGGCGATTCATCTTTGACATCAGCATTGCTTAGGGATGTGGCTCCTGAGGTTGAATTATCTGAATATGGTAGGGCACCGAGTCCTGGCAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAGAGTATAAATGTGGAACCAATTGCTGATTTGGACCTGTTCTTTGAAAGGCTCTACAGCTACTACTGTGAGAAAGGACTTTGGTGTATTATTATAAAGTGGATAGTTGAACTTCTGAGCTTGGGCTTCACTATATTGTTCTCAGGATTCTTCTTATTAAAAGTTGATTGGAATGGTCTTCGTAATGCAAAATGTGGGATGGATGCATTCGAATCTGGAATTAAGCCCTGTGACCTTGCTAAGGAAGCCCTTCATCAGCACCCATTAACCCCTCTAACTCTTTCCAAGGCCATCATTGTTGGATATTTGGGCATATTTTCCATTTATTTGGTCTTCTGTTTTTTGAGGTTTTTCTCTCAGTTAAGGGATACTTTGGGTGTCCGTCACTTCTATCACAACAGTCTCCATGTCACAGACAATGAAATTCAGACCATGCCATGGGCATCAATTCTTGAAAAGGTTGTTCAGCTACAAAGATCGCAGCAGCTCTGTGTGGTCAACGATCTTTCTGCTCATGATGTGGTTATGCGATTGATGCGGAAGGAGAACTACCTGATTGGAATGCTTAACAAGGGAGTGCTTGCTTTCCCGATTTCACAGTGGGTTCCAGGTGCTGGTCCAACTGTCAAGTTTGGCTCAGATGGAAAGCAAGAACGATTAATACTGACAAAAACCCTTGAGTGGACCTTAAATTGGTGCATTCTGCAGAGCATGTTTGATCGAAATTTCTGTGTTACAAGGGACTTTATATCTAATCCAAGAACTTTAAAGAAAAGGCTTATGGTAGTTGGGTTCGTAATGCTTCTCCTTTCACCATTTCTTGTCATATTCATGCTGGTATACCTCTTCCTGAGGCATGCAGAACAGTTTTATAACCATCCAAGCACAGCATCATCTCGAAGGTGGTCAAATTTGTCAAGGTGGATGTTTAGGGAATTTAACGAGGTGGAGCATTTGTTTAAACACCGAATCACTAGCAGTGTAGTGCATGCTTCTGATTATCTGAAGCAATTTCCGTCTCCTATGATTTCTATAATAGCAAAATTCATCTCTTTTGTTTCTGGTGGGTTTGCTGCTATTCTAATCATCATTGCATTTCTGGAGGAATCTCTGCTAGAGGGCCATATATTTGGACGCAACTTGTTCTGGTATGCTGCTGTTTTTGGAGCTATAACAGCTATCAGCAGGGCTGCCATTACCAATGAGCTGCTGGTCCTTGATCCAGAGGTGGCAATGTCTATGGTGGTACAATATACACATTATATGCCGAAGACATGGCGTGGCAAAGAGAATACGGAAAGGGTTCGGGTAGAGTTTGAAACCCTGTTTCAGTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATCTTCCTTGCTCCATATTTACTTATATTTGTTGTCCCGAAGAGGGTGGATGACATATTACAGTTTATTGCAGACTTCACGGTAGATGTTGAAGGTGTTGGTCATGTATGTAGCAATTACGGGTCTCCTTACAATGTACCTCGCTCCCAGAGGAGTTCTCAGGGGAAAATGGAGAAATCGTTTTTGAGCTTCAAGAGCAACTATCCATCATGGGACCCAAATACTCAAGGAAGTCAGTTTGTAAAACAACTGAGAACTTTCCGGGAGCAAAAGTTGCAGGGACAAGGAACTAGACACACATATTCTCCTCCAAGAGGCTTTAGCGACTGGAACTTTTTATCACGGGAAAGGCCAACCCCTGGAACTGGCTATCACATGGGGTCACTGTGGTTAATTGATGCGGATCAAAAGAATCACCCCTATCTCCTTGATTGGTATTACACCTCTCGGCCACACCATACGGCAAGTTACACCGGGGACATTCCAGAAGAACCATTTGAAGCTACTGAGCAACATTCTGCTGATTGGAATCCAACCAACTGTCTAGATAATCAACTGAAATTTGAAGATCTTTGGGCTCCACACTATGATCGATCGTACGCAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006914 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016043 GO:0016236 GO:0022411 GO:0022607 GO:0033036 GO:0034497 GO:0034613 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0044805 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071840 GO:0098542 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04137 ko04138 ko04140 map04136 map04137 map04138 map04140

Pfam Domains

Protein Families

APG9

Protein Analysis

716

Amino Acids

82.13

Weight (kDa)

7.07

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG9	PF04109	62 - 551	9.9e-160	Autophagy protein ATG9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31260
fragaria_vesca	FvH4_2g21710
malus_domestica	MD05G1199600.v1.1 MD10G1185900.v1.1
prunus_persica	Prupe.8G225400_v2.0.a1 Prupe.8G225400_v2.0.a1
pyrus_communis	pycom05g18600 pycom10g16080
rosa_chinensis	RchiOBHm_Chr6g0288391
rosa_laevigata	RLG00000012408
rosa_multiflora	Rmu_sc0001038.1_g000011
rosa_roxburghii	Rroxscaffold_7G00180100
rosa_rugosa	Rorug06G0196200
rosa_samantha	Rh6AG307100 Rh6BG313100 Rh6CG320900 Rh6DG306300
rosa_wichuraiana	Rw6G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	266, 1044
AatII	GACGTC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	3 cut(s)	609, 785, 1898
AccI	GTMKAC	2 cut(s)	1011, 1505
AciI	CCGC	2 cut(s)	709, 1940
AclWI	GGATC	2 cut(s)	1385, 1950
AcoI	YGGCCR	1 cut(s)	1988
AcsI	RAATTY	6 cut(s)	594, 895, 1081, 1106, 1214, 2099
AcuI	CTGAAG	2 cut(s)	138, 1196
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	3 cut(s)	1419, 1677, 2138
AjnI	CCWGG	3 cut(s)	136, 778, 1897
AluBI	AGCT	9 cut(s)	231, 291, 640, 658, 1340, 1349, 1378, 1728, 2042
AluI	AGCT	9 cut(s)	231, 291, 640, 658, 1340, 1349, 1378, 1728, 2042
Alw26I	GTCTC	4 cut(s)	36, 578, 1194, 1668
AlwI	GGATC	2 cut(s)	1385, 1950
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	5 cut(s)	459, 1291, 1533, 1889, 1988
ApeKI	GCWGC	6 cut(s)	652, 655, 1244, 1325, 1361, 1378
ApoI	RAATTY	6 cut(s)	594, 895, 1081, 1106, 1214, 2099
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AseI	ATTAAT	1 cut(s)	830
Asp700I	GAANNNNTTC	2 cut(s)	420, 1473
AspS9I	GGNCC	6 cut(s)	205, 788, 855, 1291, 1384, 1753
AsuC2I	CCSGG	2 cut(s)	1802, 2014
AsuHPI	GGTGA	3 cut(s)	182, 975, 1946
AsuII	TTCGAA	1 cut(s)	381
AvaII	GGWCC	5 cut(s)	205, 788, 855, 1384, 1753
AxyI	CCTNAGG	2 cut(s)	99, 1022
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	152, 2119
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BbsI	GAAGAC	3 cut(s)	341, 496, 1448
BbvI	GCAGC	6 cut(s)	664, 667, 1231, 1312, 1348, 1365
BccI	CCATC	6 cut(s)	364, 470, 806, 1056, 1525, 1753
BceAI	ACGGC	1 cut(s)	2016
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	3 cut(s)	138, 780, 1899
BciVI	GTATCC	1 cut(s)	532
BcnI	CCSGG	2 cut(s)	1802, 2014
BcoDI	GTCTC	4 cut(s)	36, 578, 1194, 1668
BfaI	CTAG	4 cut(s)	1146, 1286, 1830, 2084
BfmI	CTRYAG	2 cut(s)	226, 875
BfuI	GTATCC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	2107
BisI	GCNGC	6 cut(s)	653, 656, 1245, 1326, 1362, 1379
BlsI	GCNGC	6 cut(s)	654, 657, 1246, 1327, 1363, 1380
Bme1390I	CCNGG	5 cut(s)	138, 780, 1802, 1899, 2014
Bme18I	GGWCC	5 cut(s)	205, 788, 855, 1384, 1753
BmgT120I	GGNCC	6 cut(s)	205, 788, 855, 1291, 1384, 1753
BmiI	GGNNCC	7 cut(s)	96, 129, 189, 777, 1754, 1755, 2118
BmrFI	CCNGG	5 cut(s)	138, 780, 1802, 1899, 2014
BmsI	GCATC	5 cut(s)	364, 623, 696, 1070, 1927
BpiI	GAAGAC	3 cut(s)	341, 496, 1448
BplI	GAGNNNNNCTC	4 cut(s)	1520, 1552, 1681, 1713
BpmI	CTGGAG	1 cut(s)	1292
Bpu10I	CCTNAGC	2 cut(s)	83, 411
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	3 cut(s)	869, 1544, 1749
BpuMI	CCSGG	2 cut(s)	1802, 2014
Bsa29I	ATCGAT	1 cut(s)	2131
BsaBI	GATNNNNATC	2 cut(s)	1941, 2067
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	1668
BsaJI	CCNNGG	4 cut(s)	456, 608, 1897, 2013
BsaXI	ACNNNNNCTCC	8 cut(s)	1112, 1142, 1703, 1733, 1796, 1826, 1828, 1858
Bse1I	ACTGG	3 cut(s)	1513, 1871, 1909
Bse21I	CCTNAGG	2 cut(s)	99, 1022
Bse3DI	GCAATG	3 cut(s)	77, 1260, 1410
Bse8I	GATNNNNATC	2 cut(s)	1941, 2067
BseBI	CCWGG	3 cut(s)	138, 780, 1899
BseCI	ATCGAT	1 cut(s)	2131
BseDI	CCNNGG	4 cut(s)	456, 608, 1897, 2013
BseGI	GGATG	6 cut(s)	94, 375, 379, 1048, 1101, 1594
BseJI	GATNNNNATC	2 cut(s)	1941, 2067
BseMI	GCAATG	3 cut(s)	77, 1260, 1410
BseMII	CTCAG	9 cut(s)	90, 278, 327, 542, 822, 1013, 1712, 1781, 2037
BseNI	ACTGG	3 cut(s)	1513, 1871, 1909
BseRI	GAGGAG	3 cut(s)	1541, 1705, 1836
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	6 cut(s)	664, 667, 1231, 1312, 1348, 1365
Bsh1285I	CGRYCG	1 cut(s)	2135
BshFI	GGCC	5 cut(s)	461, 1293, 1535, 1891, 1990
BshNI	GGYRCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	2131
BsiEI	CGRYCG	1 cut(s)	2135
BsiSI	CCGG	2 cut(s)	1801, 2013
BsiWI	CGTACG	1 cut(s)	2136
BslFI	GGGAC	5 cut(s)	926, 1559, 1766, 1833, 2030
BsmAI	GTCTC	4 cut(s)	36, 578, 1194, 1668
BsmBI	CGTCTC	2 cut(s)	36, 1194
BsmFI	GGGAC	5 cut(s)	926, 1559, 1766, 1833, 2030
BsmI	GAATGC	3 cut(s)	377, 738, 870
BsnI	GGCC	5 cut(s)	461, 1293, 1535, 1891, 1990
Bso31I	GGTCTC	1 cut(s)	1668
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	3 cut(s)	130, 152, 2119
Bsp143I	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
Bsp19I	CCATGG	1 cut(s)	608
BspACI	CCGC	2 cut(s)	709, 1940
BspANI	GGCC	5 cut(s)	461, 1293, 1535, 1891, 1990
BspCNI	CTCAG	9 cut(s)	91, 279, 326, 541, 821, 1014, 1711, 1782, 2038
BspDI	ATCGAT	1 cut(s)	2131
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	7 cut(s)	96, 129, 189, 777, 1754, 1755, 2118
BspMAI	CTGCAG	1 cut(s)	879
BspPI	GGATC	2 cut(s)	1385, 1950
BspT104I	TTCGAA	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	1668
BsrDI	GCAATG	3 cut(s)	77, 1260, 1410
BsrI	ACTGG	3 cut(s)	1513, 1871, 1909
BssECI	CCNNGG	4 cut(s)	456, 608, 1897, 2013
BssMI	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
BssNAI	GTATAC	2 cut(s)	1012, 1506
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	2 cut(s)	456, 608
Bst1107I	GTATAC	2 cut(s)	1012, 1506
Bst2UI	CCWGG	3 cut(s)	138, 780, 1899
Bst4CI	ACNGT	9 cut(s)	239, 572, 771, 796, 1038, 1602, 1621, 1926, 2081
Bst6I	CTCTTC	2 cut(s)	1022, 1574
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	1813
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	753, 1029, 1161
BstDSI	CCRYGG	1 cut(s)	608
BstENI	CCTNNNNNAGG	2 cut(s)	410, 1851
BstF5I	GGATG	6 cut(s)	94, 375, 379, 1048, 1101, 1594
BstKTI	GATC	8 cut(s)	650, 676, 892, 1393, 1945, 2110, 2131, 2135
BstMAI	GTCTC	4 cut(s)	36, 578, 1194, 1668
BstMBI	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
BstMCI	CGRYCG	1 cut(s)	2135
BstMWI	GCNNNNNNNGC	6 cut(s)	147, 416, 706, 1346, 1734, 1813
BstNI	CCWGG	3 cut(s)	138, 780, 1899
BstNSI	RCATGY	3 cut(s)	886, 1031, 1163
BstSCI	CCNGG	5 cut(s)	136, 778, 1800, 1897, 2012
BstSFI	CTRYAG	2 cut(s)	226, 875
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	6 cut(s)	664, 667, 1231, 1312, 1348, 1365
BstV2I	GAAGAC	3 cut(s)	341, 496, 1448
BstX2I	RGATCY	1 cut(s)	2107
BstXI	CCANNNNNNTGG	2 cut(s)	499, 1301
BstYI	RGATCY	1 cut(s)	2107
BstZ17I	GTATAC	2 cut(s)	1012, 1506
Bsu15I	ATCGAT	1 cut(s)	2131
Bsu36I	CCTNAGG	2 cut(s)	99, 1022
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	5 cut(s)	461, 1293, 1535, 1891, 1990
BsuTUI	ATCGAT	1 cut(s)	2131
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	6 cut(s)	94, 375, 379, 1048, 1101, 1594
BtsI	GCAGTG	2 cut(s)	148, 1156
BtsIMutI	CAGTG	4 cut(s)	148, 776, 1156, 1922
Cac8I	GCNNGC	3 cut(s)	753, 1029, 1161
CaiI	CAGNNNCTG	1 cut(s)	785
CciI	TCATGA	1 cut(s)	685
Cfr13I	GGNCC	6 cut(s)	205, 788, 855, 1291, 1384, 1753
ClaI	ATCGAT	1 cut(s)	2131
CseI	GACGC	1 cut(s)	1314
Csp6I	GTAC	3 cut(s)	1418, 1676, 2137
CviQI	GTAC	3 cut(s)	1418, 1676, 2137
DpnI	GATC	8 cut(s)	649, 675, 891, 1392, 1944, 2109, 2130, 2134
DpnII	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
DraI	TTTAAA	3 cut(s)	45, 939, 1132
EaeI	YGGCCR	1 cut(s)	1988
Eam1104I	CTCTTC	2 cut(s)	1022, 1574
EarI	CTCTTC	2 cut(s)	1022, 1574
Eco130I	CCWWGG	2 cut(s)	456, 608
Eco24I	GRGCYC	2 cut(s)	152, 2119
Eco31I	GGTCTC	1 cut(s)	1668
Eco47I	GGWCC	5 cut(s)	205, 788, 855, 1384, 1753
Eco57I	CTGAAG	2 cut(s)	138, 1196
Eco81I	CCTNAGG	2 cut(s)	99, 1022
EcoNI	CCTNNNNNAGG	2 cut(s)	410, 1851
EcoO109I	RGGNCCY	1 cut(s)	1753
EcoRII	CCWGG	3 cut(s)	136, 778, 1897
EcoT14I	CCWWGG	2 cut(s)	456, 608
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	2 cut(s)	152, 2119
ErhI	CCWWGG	2 cut(s)	456, 608
Esp3I	CGTCTC	2 cut(s)	36, 1194
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FaqI	GGGAC	5 cut(s)	926, 1559, 1766, 1833, 2030
FblI	GTMKAC	2 cut(s)	1011, 1505
Fnu4HI	GCNGC	6 cut(s)	653, 656, 1245, 1326, 1362, 1379
FokI	GGATG	6 cut(s)	101, 382, 386, 1035, 1108, 1601
FriOI	GRGCYC	2 cut(s)	152, 2119
Fsp4HI	GCNGC	6 cut(s)	653, 656, 1245, 1326, 1362, 1379
FspBI	CTAG	4 cut(s)	1146, 1286, 1830, 2084
GluI	GCNGC	6 cut(s)	653, 656, 1245, 1326, 1362, 1379
GsuI	CTGGAG	1 cut(s)	1292
HaeIII	GGCC	5 cut(s)	461, 1293, 1535, 1891, 1990
HapII	CCGG	2 cut(s)	1801, 2013
HgaI	GACGC	1 cut(s)	1314
Hin1I	GRCGYC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	8 cut(s)	59, 133, 318, 383, 1140, 1277, 1951, 2068
HpaII	CCGG	2 cut(s)	1801, 2013
HphI	GGTGA	3 cut(s)	182, 975, 1946
Hpy166II	GTNNAC	4 cut(s)	670, 855, 1012, 1506
Hpy188I	TCNGA	6 cut(s)	115, 288, 600, 811, 1168, 1176
Hpy8I	GTNNAC	4 cut(s)	670, 855, 1012, 1506
HpyAV	CCTTC	6 cut(s)	13, 162, 431, 706, 1065, 1625
HpyCH4III	ACNGT	9 cut(s)	239, 572, 771, 796, 1038, 1602, 1621, 1926, 2081
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	9 cut(s)	359, 377, 870, 877, 1031, 1159, 1265, 1610, 1816
HpyF10VI	GCNNNNNNNGC	6 cut(s)	147, 416, 706, 1346, 1734, 1813
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	29
KflI	GGGWCCC	1 cut(s)	1753
Kzo9I	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
LmnI	GCTCC	7 cut(s)	100, 1120, 1337, 1555, 1688, 1804, 2122
Lsp1109I	GCAGC	6 cut(s)	664, 667, 1231, 1312, 1348, 1365
LweI	GCATC	5 cut(s)	364, 623, 696, 1070, 1927
MaeI	CTAG	4 cut(s)	1146, 1286, 1830, 2084
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	8 cut(s)	25, 401, 554, 580, 904, 1518, 1920, 2006
MalI	GATC	8 cut(s)	649, 675, 891, 1392, 1944, 2109, 2130, 2134
MboI	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
MboII	GAAGA	9 cut(s)	313, 341, 496, 1009, 1453, 1534, 1591, 2039, 2117
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	2107
MhlI	GDGCHC	3 cut(s)	130, 152, 2119
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	3 cut(s)	451, 815, 2096
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	2 cut(s)	420, 1473
MslI	CAYNNNNRTG	1 cut(s)	1001
MspI	CCGG	2 cut(s)	1801, 2013
MspR9I	CCNGG	5 cut(s)	138, 780, 1802, 1899, 2014
MssI	GTTTAAAC	1 cut(s)	1132
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	3 cut(s)	377, 738, 870
MvaI	CCWGG	3 cut(s)	138, 780, 1899
MwoI	GCNNNNNNNGC	6 cut(s)	147, 416, 706, 1346, 1734, 1813
NciI	CCSGG	2 cut(s)	1802, 2014
NcoI	CCATGG	1 cut(s)	608
NdeII	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
NlaIV	GGNNCC	7 cut(s)	96, 129, 189, 777, 1754, 1755, 2118
NmeAIII	GCCGAG	1 cut(s)	1966
NmuCI	GTSAC	5 cut(s)	25, 401, 554, 580, 1920
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	3 cut(s)	886, 1031, 1163
NspV	TTCGAA	1 cut(s)	381
PaeI	GCATGC	2 cut(s)	1031, 1163
PagI	TCATGA	1 cut(s)	685
PctI	GAATGC	3 cut(s)	377, 738, 870
PdmI	GAANNNNTTC	2 cut(s)	420, 1473
PfeI	GAWTC	7 cut(s)	59, 318, 383, 1140, 1277, 1951, 2068
Pfl23II	CGTACG	1 cut(s)	2136
PflMI	CCANNNNNTGG	3 cut(s)	609, 785, 1898
PfoI	TCCNGGA	1 cut(s)	1800
PkrI	GCNGC	6 cut(s)	654, 657, 1246, 1327, 1363, 1380
Ple19I	CGATCG	1 cut(s)	2135
PleI	GAGTC	1 cut(s)	141
PmeI	GTTTAAAC	1 cut(s)	1132
PpsI	GAGTC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	1753
PshBI	ATTAAT	1 cut(s)	830
PsiI	TTATAA	2 cut(s)	266, 1044
Psp5II	RGGWCCY	1 cut(s)	1753
Psp6I	CCWGG	3 cut(s)	136, 778, 1897
PspGI	CCWGG	3 cut(s)	136, 778, 1897
PspLI	CGTACG	1 cut(s)	2136
PspN4I	GGNNCC	7 cut(s)	96, 129, 189, 777, 1754, 1755, 2118
PspPI	GGNCC	6 cut(s)	205, 788, 855, 1291, 1384, 1753
PspPPI	RGGWCCY	1 cut(s)	1753
PsrI	GAACNNNNNNTAC	2 cut(s)	816, 848
PstI	CTGCAG	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	2107
PvuI	CGATCG	1 cut(s)	2135
RsaI	GTAC	3 cut(s)	1419, 1677, 2138
RsaNI	GTAC	3 cut(s)	1418, 1676, 2137
RseI	CAYNNNNRTG	1 cut(s)	1001
SatI	GCNGC	6 cut(s)	653, 656, 1245, 1326, 1362, 1379
Sau3AI	GATC	8 cut(s)	647, 673, 889, 1390, 1942, 2107, 2128, 2132
Sau96I	GGNCC	6 cut(s)	205, 788, 855, 1291, 1384, 1753
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	5 cut(s)	138, 780, 1802, 1899, 2014
SduI	GDGCHC	3 cut(s)	130, 152, 2119
SfaNI	GCATC	5 cut(s)	364, 623, 696, 1070, 1927
SfcI	CTRYAG	2 cut(s)	226, 875
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	5 cut(s)	205, 788, 855, 1384, 1753
SmiMI	CAYNNNNRTG	1 cut(s)	1001
SmlI	CTYRAG	3 cut(s)	848, 1523, 1764
SmoI	CTYRAG	3 cut(s)	848, 1523, 1764
SphI	GCATGC	2 cut(s)	1031, 1163
SsiI	CCGC	2 cut(s)	709, 1940
SspMI	CTAG	4 cut(s)	1146, 1286, 1830, 2084
StyD4I	CCNGG	5 cut(s)	136, 778, 1800, 1897, 2012
StyI	CCWWGG	2 cut(s)	456, 608
TaaI	ACNGT	9 cut(s)	239, 572, 771, 796, 1038, 1602, 1621, 1926, 2081
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	4 cut(s)	381, 892, 1069, 2131
TfiI	GAWTC	7 cut(s)	59, 318, 383, 1140, 1277, 1951, 2068
TscAI	CASTG	4 cut(s)	148, 776, 1156, 1929
TseFI	GTSAC	5 cut(s)	25, 401, 554, 580, 1920
TseI	GCWGC	6 cut(s)	652, 655, 1244, 1325, 1361, 1378
Tsp45I	GTSAC	5 cut(s)	25, 401, 554, 580, 1920
TspDTI	ATGAA	5 cut(s)	51, 413, 606, 991, 1207
TspGWI	ACGGA	3 cut(s)	542, 1176, 1481
TspRI	CASTG	4 cut(s)	148, 776, 1156, 1929
Van91I	CCANNNNNTGG	3 cut(s)	609, 785, 1898
VpaK11BI	GGWCC	5 cut(s)	205, 788, 855, 1384, 1753
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	2 cut(s)	410, 1851
XapI	RAATTY	6 cut(s)	594, 895, 1081, 1106, 1214, 2099
XbaI	TCTAGA	1 cut(s)	2083
XceI	RCATGY	3 cut(s)	886, 1031, 1163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1378
XmiI	GTMKAC	2 cut(s)	1011, 1505
XmnI	GAANNNNTTC	2 cut(s)	420, 1473
XspI	CTAG	4 cut(s)	1146, 1286, 1830, 2084
ZraI	GACGTC	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.