Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003080

Physical Location & Seq

Genomic Coordinates Reverse (-)

19464511 .. 19470524

Gene Structure 6014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1800 bp

ATGGTTTTGAAAGCTTCAAAACTAACAGTTTTGAGCAGTTCTGTATTAATTACACTAATGAAAAGCTGCAACAACATTTCAACAAGGTACGAGCATGTATTCAAGACGGAACAAGAGGAATACACTAAAGAGGAAATCGATTGGAGCTACATAGAATTTGTGGATAATAAAGATGTCCTGGATCTCATTGAACAGAAGAAAGGTGGGATTATTGCTCTACTTGATGAAGCTTGTATGTTTCCAAAATCAACTCATGAAACATTTTCAACGAAGCTGTATCAGACATTCAAAGATCACAAACGCTTCGTCAAGCCAAAACTGACCCGCTCAGATTTCACCATTGTTCATTATGCAGGAGAAGTACAATATCAGTCTGATCAATTCCTAGACAAAAATAAAGACTATATTGTTCCTGAACATCGGGATTTGTTGAGTGCTTCAACATGTTCTTTTGTAGCAGGCCTTTTCCCTCCACTTACTGAGGAGGCAACCAAATCTTCCAAGTTCTCATCCATCAGTTCTCGTTTTAAGCTACAACTCCAACAATTGATGGAAATACTAAATTTTACAGAACCCCATTACATAAGATGTATAAAGCCGAATAGTGTCTTAAAGCCTGCTATATTCGAGAATGTTAATGTCTTGCAACAACTACGTTCTGGTGGTGTTTTAGAGGCTGTGCGAATAAAATGTGCTGGATACCCTACTTACAGGAGTTTTTCTGAATTTTTAACTCGATTTCGTGTCCTGGCCCCGGAAGTTTTAAAAATGGATTGTCCTGAAAATGAAGCCAGCGAAAAGATTCTGGTGAAGATGGGGCTTAAAGATTATCAGATAGGGAAAACAAAGGTTTTCCTAAGAGCTGGTCAGATGGCTGAGCTAGATGCAAAGAGAATACTCTTACTCGGTGACTCAGCTAAGGTGATTCAAACCCAGGGCAGAACTTGTATTACTCGTAAGAAGTATGTTTCTACACTGGAGGCTTCTATTTGCGTACAATCATTTTGTAAAGGAGAACTGGCTCGCAAGTTATTGAAGCTCAAGAAGCGGGAGATTTCTGCAGTTAAAATTCAGAAGACTGCCCGTAAACGCCTGGCGAGAAAAGATTATCTCAGAATAAAGTTCTCTTCGACTATCTTACAGGCAGGCGTGCGGGCAATGGCTGCCCGTGATGAATTTAGATATAGGGTTAATGCGGCAATTATTATTCAGACAGGTTTACGGGCAATGGCTGCTCGTGAAGATTTTAGATGTAAAGTTAATGCGGCAGTTATTCAGACTGACTTGGAAGCAAAAGGAGAAGAAACAACAGAGTTGGAGTCCTCCGTGCAAGCTAGTACTGACTTGGAAAAAGAAAAGGTTAAAGAGGCAACAAATGCGGAGTCCCCCCTGCTTACTAATGTAAGCAGAGGTGTTGAAATAGATGTGTTGTCTAAAAGTCAGGTTGCACAGGTAGAAACTGAAGACGCATGCTCTATGACCAAAGATCTTTCAAGTCCTGATCAAAATGCTGAAAGAGTTAAAACTCTTACTGCAGAGGTTGAAAGTCTGAAGGCCATGTTGCAAGCAGAAAAACAAAGAGCCAATGAGTGTGAAAGGAGGTTTGTAGAAGCTCGGGTATCAAGTGAGGAAGGACGTAAAAAATTAGAGGAAACTGAAAGAATAGTTCATCAGCTTCAGGAATCTTTGAACAGTGCGTGTCAGGATGATATATTGCATGTCAAACCAAGTTTCGGAGCTGAAAACAATCTTATCTACTGCGTCCAAGTCAAGTTCAACAACTTCAGGACCTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0008150 GO:0009987 GO:0015629 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030029 GO:0030048 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ Myosin_N Myosin_head

Protein Analysis

600

Amino Acids

68.08

Weight (kDa)

8.85

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_head	PF00063	31 - 287	1.5e-78	Myosin head (motor domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58160 AT3G58160 AT3G58160 AT3G58160 AT3G58160
fragaria_vesca	FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050
malus_domestica	MD05G1201700.v1.1 MD10G1188400.v1.1
prunus_persica	Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1
pyrus_communis	pycom10g16280
rosa_chinensis	RchiOBHm_Chr6g0288911
rosa_laevigata	RLG00000012349
rosa_multiflora	Rmu_sc0005314.1_g000002
rosa_roxburghii	Rroxscaffold_7G00179750
rosa_rugosa	Rorug06G0199100 Rorug06G0199200
rosa_samantha	Rh6AG310700 Rh6BG317200 Rh6CG323900 Rh6DG309600
rosa_wichuraiana	Rw6G026860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	327
AciI	CCGC	6 cut(s)	325, 1048, 1153, 1196, 1265, 1379
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	5 cut(s)	155, 562, 725, 1068, 1175
AcuI	CTGAAG	4 cut(s)	1482, 1571, 1661, 1768
AfaI	GTAC	4 cut(s)	89, 363, 996, 1339
AfiI	CCNNNNNNNGG	2 cut(s)	754, 1733
AflIII	ACRYGT	1 cut(s)	443
AjnI	CCWGG	4 cut(s)	177, 747, 933, 1092
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	1614
AoxI	GGCC	3 cut(s)	460, 750, 1554
ApeKI	GCWGC	3 cut(s)	66, 1163, 1232
ApoI	RAATTY	5 cut(s)	155, 562, 725, 1068, 1175
ArsI	GACNNNNNNTTYG	4 cut(s)	291, 323, 1367, 1399
AseI	ATTAAT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	801
AspS9I	GGNCC	2 cut(s)	751, 1788
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	4 cut(s)	328, 820, 920, 934
AvaI	CYCGRG	1 cut(s)	1614
AvaII	GGWCC	1 cut(s)	1788
BauI	CACGAG	1 cut(s)	1236
BbsI	GAAGAC	2 cut(s)	1082, 1470
BbvI	GCAGC	3 cut(s)	53, 1150, 1219
BccI	CCATC	4 cut(s)	521, 544, 808, 865
BciT130I	CCWGG	4 cut(s)	179, 749, 935, 1094
BciVI	GTATCC	1 cut(s)	692
BclI	TGATCA	2 cut(s)	376, 1501
BcnI	CCSGG	1 cut(s)	755
BfaI	CTAG	3 cut(s)	386, 881, 1335
BfmI	CTRYAG	2 cut(s)	1059, 1533
BfuI	GTATCC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	1486
BisI	GCNGC	5 cut(s)	67, 1164, 1197, 1233, 1266
BlpI	GCTNAGC	1 cut(s)	876
BlsI	GCNGC	5 cut(s)	68, 1165, 1198, 1234, 1267
BmcAI	AGTACT	1 cut(s)	1339
Bme1390I	CCNGG	5 cut(s)	179, 749, 755, 935, 1094
Bme18I	GGWCC	1 cut(s)	1788
BmeT110I	CYCGRG	1 cut(s)	1614
BmgT120I	GGNCC	2 cut(s)	751, 1788
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	5 cut(s)	179, 749, 755, 935, 1094
BmsI	GCATC	1 cut(s)	874
BpiI	GAAGAC	2 cut(s)	1082, 1470
BpmI	CTGGAG	1 cut(s)	998
Bpu10I	CCTNAGC	1 cut(s)	918
Bpu1102I	GCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	1025
BpuMI	CCSGG	1 cut(s)	755
Bsa29I	ATCGAT	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	753, 933, 934
Bsc4I	CCNNNNNNNGG	2 cut(s)	754, 1733
Bse1I	ACTGG	2 cut(s)	981, 1023
Bse3DI	GCAATG	2 cut(s)	1164, 1233
BseBI	CCWGG	4 cut(s)	179, 749, 935, 1094
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	753, 933, 934
BseGI	GGATG	2 cut(s)	509, 1711
BseLI	CCNNNNNNNGG	2 cut(s)	754, 1733
BseMI	GCAATG	2 cut(s)	1164, 1233
BseMII	CTCAG	5 cut(s)	342, 471, 867, 927, 1126
BseNI	ACTGG	2 cut(s)	981, 1023
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	53, 1150, 1219
BshFI	GGCC	3 cut(s)	462, 752, 1556
BshVI	ATCGAT	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	1614
BsiSI	CCGG	1 cut(s)	755
BslFI	GGGAC	1 cut(s)	1369
BslI	CCNNNNNNNGG	2 cut(s)	754, 1733
BsmFI	GGGAC	1 cut(s)	1369
BsnI	GGCC	3 cut(s)	462, 752, 1556
BsoBI	CYCGRG	1 cut(s)	1614
Bsp143I	GATC	5 cut(s)	181, 292, 376, 1486, 1501
Bsp1720I	GCTNAGC	1 cut(s)	876
BspACI	CCGC	6 cut(s)	325, 1048, 1153, 1196, 1265, 1379
BspANI	GGCC	3 cut(s)	462, 752, 1556
BspCNI	CTCAG	5 cut(s)	341, 472, 868, 926, 1125
BspDI	ATCGAT	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	2 cut(s)	1063, 1537
BspPI	GGATC	1 cut(s)	189
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	2 cut(s)	1164, 1233
BsrI	ACTGG	2 cut(s)	981, 1023
BssECI	CCNNGG	3 cut(s)	753, 933, 934
BssMI	GATC	5 cut(s)	181, 292, 376, 1486, 1501
BssSI	CACGAG	1 cut(s)	1236
Bst2BI	CACGAG	1 cut(s)	1236
Bst2UI	CCWGG	4 cut(s)	179, 749, 935, 1094
Bst4CI	ACNGT	2 cut(s)	28, 1694
Bst6I	CTCTTC	1 cut(s)	1132
BstAPI	GCANNNNNTGC	3 cut(s)	1163, 1232, 1376
BstDEI	CTNAG	7 cut(s)	328, 480, 857, 876, 913, 918, 1112
BstF5I	GGATG	2 cut(s)	509, 1711
BstKTI	GATC	5 cut(s)	184, 295, 379, 1489, 1504
BstMBI	GATC	5 cut(s)	181, 292, 376, 1486, 1501
BstMWI	GCNNNNNNNGC	4 cut(s)	1045, 1163, 1232, 1376
BstNI	CCWGG	4 cut(s)	179, 749, 935, 1094
BstNSI	RCATGY	4 cut(s)	98, 447, 1473, 1721
BstSCI	CCNGG	5 cut(s)	177, 747, 753, 933, 1092
BstSFI	CTRYAG	2 cut(s)	1059, 1533
BstV1I	GCAGC	3 cut(s)	53, 1150, 1219
BstV2I	GAAGAC	2 cut(s)	1082, 1470
BstX2I	RGATCY	2 cut(s)	181, 1486
BstYI	RGATCY	2 cut(s)	181, 1486
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	3 cut(s)	462, 752, 1556
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	509, 1711
BtsIMutI	CAGTG	2 cut(s)	974, 1699
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	751, 1788
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	2 cut(s)	1475, 1750
Csp6I	GTAC	4 cut(s)	88, 362, 995, 1338
CviAII	CATG	6 cut(s)	95, 254, 444, 1470, 1558, 1718
CviQI	GTAC	4 cut(s)	88, 362, 995, 1338
DdeI	CTNAG	7 cut(s)	328, 480, 857, 876, 913, 918, 1112
DpnI	GATC	5 cut(s)	183, 294, 378, 1488, 1503
DpnII	GATC	5 cut(s)	181, 292, 376, 1486, 1501
DraI	TTTAAA	1 cut(s)	765
Eam1104I	CTCTTC	1 cut(s)	1132
EarI	CTCTTC	1 cut(s)	1132
Eco147I	AGGCCT	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	1788
Eco57I	CTGAAG	4 cut(s)	1482, 1571, 1661, 1768
Eco88I	CYCGRG	1 cut(s)	1614
EcoO109I	RGGNCCY	1 cut(s)	1788
EcoRII	CCWGG	4 cut(s)	177, 747, 933, 1092
FaeI	CATG	6 cut(s)	98, 257, 447, 1473, 1561, 1721
FaqI	GGGAC	1 cut(s)	1369
FatI	CATG	6 cut(s)	94, 253, 443, 1469, 1557, 1717
FauI	CCCGC	3 cut(s)	332, 1041, 1146
FbaI	TGATCA	2 cut(s)	376, 1501
Fnu4HI	GCNGC	5 cut(s)	67, 1164, 1197, 1233, 1266
FokI	GGATG	2 cut(s)	496, 1718
Fsp4HI	GCNGC	5 cut(s)	67, 1164, 1197, 1233, 1266
FspBI	CTAG	3 cut(s)	386, 881, 1335
GluI	GCNGC	5 cut(s)	67, 1164, 1197, 1233, 1266
GsuI	CTGGAG	1 cut(s)	998
HaeIII	GGCC	3 cut(s)	462, 752, 1556
HapII	CCGG	1 cut(s)	755
HgaI	GACGC	2 cut(s)	1475, 1750
Hin1II	CATG	6 cut(s)	98, 257, 447, 1473, 1561, 1721
HindIII	AAGCTT	2 cut(s)	12, 228
HinfI	GANTC	6 cut(s)	802, 911, 925, 1319, 1382, 1682
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	4 cut(s)	328, 820, 920, 934
Hpy166II	GTNNAC	2 cut(s)	1088, 1220
Hpy8I	GTNNAC	2 cut(s)	1088, 1220
HpyAV	CCTTC	2 cut(s)	1546, 1625
HpyCH4III	ACNGT	2 cut(s)	28, 1694
HpyCH4IV	ACGT	2 cut(s)	655, 1636
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1045, 1163, 1232, 1376
HpyF3I	CTNAG	7 cut(s)	328, 480, 857, 876, 913, 918, 1112
HpySE526I	ACGT	2 cut(s)	655, 1636
Hsp92II	CATG	6 cut(s)	98, 257, 447, 1473, 1561, 1721
Ksp22I	TGATCA	2 cut(s)	376, 1501
Kzo9I	GATC	5 cut(s)	181, 292, 376, 1486, 1501
LmnI	GCTCC	2 cut(s)	144, 1736
Lsp1109I	GCAGC	3 cut(s)	53, 1150, 1219
LweI	GCATC	1 cut(s)	874
MaeI	CTAG	3 cut(s)	386, 881, 1335
MaeII	ACGT	2 cut(s)	655, 1636
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	5 cut(s)	183, 294, 378, 1488, 1503
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	5 cut(s)	181, 292, 376, 1486, 1501
MboII	GAAGA	8 cut(s)	208, 489, 823, 1087, 1119, 1253, 1313, 1475
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	2 cut(s)	181, 1486
MlyI	GAGTC	3 cut(s)	905, 1328, 1391
MmeI	TCCRAC	2 cut(s)	565, 1296
MroXI	GAANNNNTTC	1 cut(s)	801
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	5 cut(s)	179, 749, 755, 935, 1094
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	4 cut(s)	179, 749, 935, 1094
MwoI	GCNNNNNNNGC	4 cut(s)	1045, 1163, 1232, 1376
NciI	CCSGG	1 cut(s)	755
NdeII	GATC	5 cut(s)	181, 292, 376, 1486, 1501
NlaIII	CATG	6 cut(s)	98, 257, 447, 1473, 1561, 1721
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	908
NspI	RCATGY	4 cut(s)	98, 447, 1473, 1721
PaeI	GCATGC	1 cut(s)	1473
PagI	TCATGA	1 cut(s)	253
PasI	CCCWGGG	1 cut(s)	934
PceI	AGGCCT	1 cut(s)	462
PciI	ACATGT	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	3 cut(s)	802, 925, 1682
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	5 cut(s)	68, 1165, 1198, 1234, 1267
PleI	GAGTC	3 cut(s)	905, 1327, 1390
PpsI	GAGTC	3 cut(s)	905, 1327, 1390
PpuMI	RGGWCCY	1 cut(s)	1788
PscI	ACATGT	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	1788
Psp6I	CCWGG	4 cut(s)	177, 747, 933, 1092
PspGI	CCWGG	4 cut(s)	177, 747, 933, 1092
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	751, 1788
PspPPI	RGGWCCY	1 cut(s)	1788
PsrI	GAACNNNNNNTAC	2 cut(s)	934, 966
PstI	CTGCAG	2 cut(s)	1063, 1537
PsuI	RGATCY	2 cut(s)	181, 1486
RsaI	GTAC	4 cut(s)	89, 363, 996, 1339
RsaNI	GTAC	4 cut(s)	88, 362, 995, 1338
SatI	GCNGC	5 cut(s)	67, 1164, 1197, 1233, 1266
Sau3AI	GATC	5 cut(s)	181, 292, 376, 1486, 1501
Sau96I	GGNCC	2 cut(s)	751, 1788
ScaI	AGTACT	1 cut(s)	1339
SchI	GAGTC	3 cut(s)	905, 1328, 1391
ScrFI	CCNGG	5 cut(s)	179, 749, 755, 935, 1094
SfaNI	GCATC	1 cut(s)	874
SfcI	CTRYAG	2 cut(s)	1059, 1533
SinI	GGWCC	1 cut(s)	1788
SmlI	CTYRAG	1 cut(s)	1040
SmoI	CTYRAG	1 cut(s)	1040
SphI	GCATGC	1 cut(s)	1473
SseBI	AGGCCT	1 cut(s)	462
SsiI	CCGC	6 cut(s)	325, 1048, 1153, 1196, 1265, 1379
SspMI	CTAG	3 cut(s)	386, 881, 1335
StuI	AGGCCT	1 cut(s)	462
StyD4I	CCNGG	5 cut(s)	177, 747, 753, 933, 1092
TaaI	ACNGT	2 cut(s)	28, 1694
TaiI	ACGT	2 cut(s)	658, 1639
TaqI	TCGA	4 cut(s)	138, 627, 736, 1130
TatI	WGTACW	2 cut(s)	361, 1337
TauI	GCSGC	2 cut(s)	1199, 1268
TfiI	GAWTC	3 cut(s)	802, 925, 1682
TscAI	CASTG	2 cut(s)	981, 1699
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	3 cut(s)	66, 1163, 1232
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	7 cut(s)	74, 240, 270, 335, 801, 1188, 1658
TspGWI	ACGGA	2 cut(s)	122, 1315
TspRI	CASTG	2 cut(s)	981, 1699
VpaK11BI	GGWCC	1 cut(s)	1788
VspI	ATTAAT	1 cut(s)	47
XapI	RAATTY	5 cut(s)	155, 562, 725, 1068, 1175
XceI	RCATGY	4 cut(s)	98, 447, 1473, 1721
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	3 cut(s)	386, 881, 1335
ZrmI	AGTACT	1 cut(s)	1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.