Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003080

Physical Location & Seq

Genomic Coordinates Forward (+)

32031422 .. 32033561

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0199200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGATGGATTTCTATGCAATGAAGAGGAAGCAACTTCAAAGACTCTGCAAAAAGCATAGCATCCCTGCAAACATAGGGAACACAGAAATGGCTAACAGGCTTACTTTGCTTCACAAGGTTCAGATACAGAAGGTGAAGAAAGTAAGCTTCAATCCTGAGAATGAAATATTTTTCTTTGTGGCTACGCCCAAATATTCATACTCCAGTTTAAAGAAGAAACGGGTGCAAAAGAGGAAGTCCAGGGTGAAGCAAGCTTCAAAGAAGCAGGTTCAGCTTGCTGAAAATGGGAGAGAACTTGAACTCTCGGTGAGCATAATTGTTACCCCAGTTAGACATATAAGATCTCGTGCACAGAGAATGCAACAAGGTGATGCAGAAGCAATGTGTTTGCCTTTTTCTGCGCAGAAGAAAGTCAGAAGCATTGAGGAAAATGTAGGTGGTGATAAGCCGCCTCTGAAGGTTAAGTTGAGTGAGGGAGTTGGTGGTGATACAAAAGATTCTATTTCGAGTGGAGTATTAATTTATAAAAAACTGAGAAGCAGAATGGTGGTGTGTAAATATGGTGGAGATTCAATGGTTTCGAAGAAGAAAATTAATGCAGAGAGTGCTGTTGAAGCAATTGTGCCAAAAGGTGGAAGACTACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0008150 GO:0009987 GO:0015629 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030029 GO:0030048 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ Myosin_N Myosin_head

Protein Analysis

217

Amino Acids

24.48

Weight (kDa)

10.22

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58160 AT3G58160 AT3G58160 AT3G58160 AT3G58160
fragaria_vesca	FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050
malus_domestica	MD05G1201700.v1.1 MD10G1188400.v1.1
prunus_persica	Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1
pyrus_communis	pycom10g16280
rosa_chinensis	RchiOBHm_Chr6g0288911
rosa_laevigata	RLG00000012349
rosa_multiflora	Rmu_sc0005314.1_g000002
rosa_roxburghii	Rroxscaffold_7G00179750
rosa_rugosa	Rorug06G0199100 Rorug06G0199200
rosa_samantha	Rh6AG310700 Rh6BG317200 Rh6CG323900 Rh6DG309600
rosa_wichuraiana	Rw6G026860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
Acc16I	TGCGCA	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	635
AciI	CCGC	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	6 cut(s)	41, 154, 261, 302, 576, 617
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	150, 257, 277
AluI	AGCT	3 cut(s)	150, 257, 277
Alw21I	GWGCWC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	351
ApaLI	GTGCAC	1 cut(s)	351
ArsI	GACNNNNNNTTYG	1 cut(s)	633
AseI	ATTAAT	2 cut(s)	521, 597
AspLEI	GCGC	1 cut(s)	406
AsuHPI	GGTGA	6 cut(s)	148, 259, 322, 383, 455, 500
AsuII	TTCGAA	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	355
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	72, 364
BmuI	ACTGGG	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	646
BpmI	CTGGAG	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	2 cut(s)	207, 329
Bse3DI	GCAATG	2 cut(s)	27, 390
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	2 cut(s)	27, 390
BseMII	CTCAG	2 cut(s)	150, 527
BseNI	ACTGG	2 cut(s)	207, 329
BseSI	GKGCMC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	344
BspACI	CCGC	1 cut(s)	452
BspCNI	CTCAG	2 cut(s)	151, 528
BspMI	ACCTGC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	584
BsrDI	GCAATG	2 cut(s)	27, 390
BsrI	ACTGG	2 cut(s)	207, 329
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	255, 279
BstDEI	CTNAG	2 cut(s)	159, 536
BstF5I	GGATG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 274, 608, 617
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	255, 279
CfoI	GCGC	1 cut(s)	406
CviJI	RGCY	7 cut(s)	95, 103, 150, 185, 257, 277, 451
CviKI_1	RGCY	7 cut(s)	95, 103, 150, 185, 257, 277, 451
DdeI	CTNAG	2 cut(s)	159, 536
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
DraI	TTTAAA	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	242
FaiI	YATR	9 cut(s)	18, 60, 77, 202, 317, 339, 341, 528, 564
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	452
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	190
HhaI	GCGC	1 cut(s)	406
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HindIII	AAGCTT	2 cut(s)	148, 255
HinfI	GANTC	3 cut(s)	45, 500, 572
HphI	GGTGA	6 cut(s)	148, 259, 322, 383, 455, 500
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	3 cut(s)	126, 419, 459
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	127, 454
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4V	TGCA	8 cut(s)	20, 51, 71, 229, 353, 364, 377, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 274, 608, 617
HpyF3I	CTNAG	2 cut(s)	159, 536
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	1 cut(s)	344
LpnPI	CCDG	8 cut(s)	81, 85, 171, 220, 229, 254, 256, 342
LweI	GCATC	2 cut(s)	72, 364
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	7 cut(s)	37, 151, 229, 421, 598, 601, 651
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	4 cut(s)	318, 522, 594, 621
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	21, 228, 421, 465, 469
MseI	TTAA	4 cut(s)	212, 465, 521, 597
MslI	CAYNNNNRTG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	4 cut(s)	109, 274, 608, 617
NdeII	GATC	1 cut(s)	344
NsbI	TGCGCA	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	584
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	500, 572
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PshBI	ATTAAT	2 cut(s)	521, 597
PsiI	TTATAA	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	212, 465, 521, 597
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	72, 364
SfuI	TTCGAA	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	318, 522, 594, 621
SsiI	CCGC	1 cut(s)	452
SspI	AATATT	2 cut(s)	171, 197
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	648
TaqI	TCGA	2 cut(s)	509, 584
TasI	AATT	4 cut(s)	318, 522, 594, 621
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	2 cut(s)	500, 572
Tru1I	TTAA	4 cut(s)	212, 465, 521, 597
Tru9I	TTAA	4 cut(s)	212, 465, 521, 597
TspDTI	ATGAA	3 cut(s)	38, 180, 189
Van91I	CCANNNNNTGG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	351
VspI	ATTAAT	2 cut(s)	521, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.