Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003080

Physical Location & Seq

Genomic Coordinates Forward (+)

32030448 .. 32030774

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0199100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGTGGTGGGCTTCGGATAGTTTCCGGACGGCTCAGCCTTGATTTCTGGCTGCATCTCGCCCCGCGGCGTGGGTGTGTTCATCATGACCAGCAGTATTTCAGAGGGCGTGTTTGGCCTGTTTCTGGTGTGAGTTGTGGCGGTGTGAGGCACGGCGGTTTGGGCCGAAGCGTGTGGGAGTCGTGGAGGAGTAGATCGGCGTGGCACGAGTCGAGCAACGCTGCTGGGATTATGGCGTACGACATGTCGTCTGGAGCACTGGCTTGTGGCGTACGACATGTCGTCGAGGTTGATGGGCTGGGGCCAGACCAACTTGATGGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0008150 GO:0009987 GO:0015629 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030029 GO:0030048 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IQ Myosin_N Myosin_head

Protein Analysis

108

Amino Acids

11.7

Weight (kDa)

8.66

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58160 AT3G58160 AT3G58160 AT3G58160 AT3G58160
fragaria_vesca	FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050 FvH4_2g22050
malus_domestica	MD05G1201700.v1.1 MD10G1188400.v1.1
prunus_persica	Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1 Prupe.8G228100_v2.0.a1
pyrus_communis	pycom10g16280
rosa_chinensis	RchiOBHm_Chr6g0288911
rosa_laevigata	RLG00000012349
rosa_multiflora	Rmu_sc0005314.1_g000002
rosa_roxburghii	Rroxscaffold_7G00179750
rosa_rugosa	Rorug06G0199100 Rorug06G0199200
rosa_samantha	Rh6AG310700 Rh6BG317200 Rh6CG323900 Rh6DG309600
rosa_wichuraiana	Rw6G026860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	4 cut(s)	65, 67, 141, 156
AfaI	GTAC	2 cut(s)	239, 273
AfiI	CCNNNNNNNGG	2 cut(s)	71, 125
AflIII	ACRYGT	2 cut(s)	243, 277
AhdI	GACNNNNNGTC	2 cut(s)	247, 281
Alw21I	GWGCWC	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	3 cut(s)	116, 163, 302
ApeKI	GCWGC	2 cut(s)	52, 221
AspS9I	GGNCC	2 cut(s)	163, 302
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	39, 208
BccI	CCATC	2 cut(s)	287, 311
BceAI	ACGGC	2 cut(s)	47, 169
BisI	GCNGC	3 cut(s)	53, 68, 222
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	3 cut(s)	54, 69, 223
BmeRI	GACNNNNNGTC	2 cut(s)	247, 281
BmgT120I	GGNCC	2 cut(s)	163, 302
BmiI	GGNNCC	1 cut(s)	303
BmsI	GCATC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 125
Bse1I	ACTGG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	71, 125
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	39, 208
BseYI	CCCAGC	2 cut(s)	224, 298
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	118, 165, 304
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	27
BsiWI	CGTACG	2 cut(s)	237, 271
BslI	CCNNNNNNNGG	2 cut(s)	71, 125
BsnI	GGCC	3 cut(s)	118, 165, 304
Bsp1286I	GDGCHC	2 cut(s)	259, 324
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	194
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	4 cut(s)	65, 67, 141, 156
BspANI	GGCC	3 cut(s)	118, 165, 304
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	194
BssSI	CACGAG	1 cut(s)	206
Bst2BI	CACGAG	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 162
BstNSI	RCATGY	2 cut(s)	247, 281
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	39, 208
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	118, 165, 304
BtgI	CCRYGG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	257
CciI	TCATGA	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	163, 302
Cfr42I	CCGCGG	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	238, 272
CviAII	CATG	3 cut(s)	86, 244, 278
CviQI	GTAC	2 cut(s)	238, 272
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
DriI	GACNNNNNGTC	2 cut(s)	247, 281
Eam1105I	GACNNNNNGTC	2 cut(s)	247, 281
Eco24I	GRGCYC	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	3 cut(s)	89, 247, 281
FaiI	YATR	4 cut(s)	87, 233, 245, 279
FatI	CATG	3 cut(s)	85, 243, 277
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	53, 68, 222
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	3 cut(s)	53, 68, 222
GluI	GCNGC	3 cut(s)	53, 68, 222
GsaI	CCCAGC	2 cut(s)	228, 302
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	118, 165, 304
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	3 cut(s)	89, 247, 281
HinfI	GANTC	2 cut(s)	179, 209
HpaII	CCGG	1 cut(s)	27
Hpy188I	TCNGA	3 cut(s)	18, 104, 326
Hpy188III	TCNNGA	3 cut(s)	27, 86, 252
Hpy99I	CGWCG	1 cut(s)	287
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 162
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	89, 247, 281
Kpn2I	TCCGGA	1 cut(s)	26
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	2 cut(s)	39, 208
LweI	GCATC	1 cut(s)	64
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	259, 324
MlyI	GAGTC	2 cut(s)	188, 218
MnlI	CCTC	4 cut(s)	98, 141, 180, 280
MroI	TCCGGA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	115, 162
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	3 cut(s)	89, 247, 281
NlaIV	GGNNCC	1 cut(s)	303
NspI	RCATGY	2 cut(s)	247, 281
PagI	TCATGA	1 cut(s)	85
PciI	ACATGT	2 cut(s)	243, 277
Pfl23II	CGTACG	2 cut(s)	237, 271
PkrI	GCNGC	3 cut(s)	54, 69, 223
PleI	GAGTC	2 cut(s)	187, 217
PpsI	GAGTC	2 cut(s)	187, 217
PscI	ACATGT	2 cut(s)	243, 277
PspFI	CCCAGC	2 cut(s)	224, 298
PspLI	CGTACG	2 cut(s)	237, 271
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	163, 302
RsaI	GTAC	2 cut(s)	239, 273
RsaNI	GTAC	2 cut(s)	238, 272
SacII	CCGCGG	1 cut(s)	68
SatI	GCNGC	3 cut(s)	53, 68, 222
Sau3AI	GATC	1 cut(s)	194
Sau96I	GGNCC	2 cut(s)	163, 302
SchI	GAGTC	2 cut(s)	188, 218
SduI	GDGCHC	2 cut(s)	259, 324
SetI	ASST	1 cut(s)	291
SfaNI	GCATC	1 cut(s)	64
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SsiI	CCGC	4 cut(s)	65, 67, 141, 156
TaqI	TCGA	2 cut(s)	212, 285
TauI	GCSGC	1 cut(s)	70
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	52, 221
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	264
XceI	RCATGY	2 cut(s)	247, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.