pycom10g16970

snRNP Sm proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016194
Physical Location & Seq
Forward (+)
20153510 .. 20154221
712 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGCCTCCAATAAAGCCCAAAACTTGGGAAAACCCACAGCCGGTGGCAAAATACCTCTCTCGCTGTTTTTCCTCTCCACATCTTCCTCCTCCTTCGGGTCTCTGCAAAACCAGCTCCAGACTTCGATCCTACAGAACCCCAAGGGGCTTCACCATCTCCTGCTGTCTCTCTCAACCTGCAAATAAAAAAATGTTGTTCTTCTCTTATTTCAAAGAGTTGGTGGGGAGAGAAGTGACGGTGGAGCTGAAGAATGACCTTGCAATCAGAGGAACACTGCACTCGGTGGATCAGTATCTCAACATTAAGCTCGAGAATACTAGGGTTGTCGACCAGGACAAGTACCCTCACATGGTAACCATTGTTGTCTTTGTCTTGTTTCTGATTAACGTTAGACTATTCTATGTACTTGTCTGTGCCTGTTGGTTGTTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LSM

Protein Analysis

145

Amino Acids

16.64

Weight (kDa)

9.56

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 69 - 116 2e-12 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03330
fragaria_vesca FvH4_3g16480
malus_domestica MD05G1209800.v1.1 MD10G1196100.v1.1
prunus_persica Prupe.4G147700_v2.0.a1
pyrus_communis pycom10g16970
rosa_chinensis RchiOBHm_Chr5g0027471
rosa_multiflora Rmu_sc0007802.1_g000025
rosa_roxburghii Rroxscaffold_1G00052060
rosa_rugosa Rorug05G0099200
rosa_samantha Rh5AG193300 Rh5BG191400 Rh5CG211600 Rh5DG192800
rosa_wichuraiana Rw5G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 24
AccI GTMKAC 1 cut(s) 327
AclI AACGTT 1 cut(s) 387
AclWI GGATC 2 cut(s) 120, 294
AcuI CTGAAG 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 2 cut(s) 341, 405
AfiI CCNNNNNNNGG 4 cut(s) 24, 40, 95, 349
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 3 cut(s) 114, 244, 307
AluI AGCT 3 cut(s) 114, 244, 307
Alw26I GTCTC 2 cut(s) 104, 170
AlwI GGATC 2 cut(s) 120, 294
Ama87I CYCGRG 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 308
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 104, 170
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 130
BfuAI ACCTGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 40, 95, 349
Bse118I RCCGGY 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 140
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 4 cut(s) 24, 40, 95, 349
BseRI GAGGAG 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 4 cut(s) 24, 40, 95, 349
BsmAI GTCTC 2 cut(s) 104, 170
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 308
Bsp143I GATC 2 cut(s) 125, 286
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 2 cut(s) 120, 294
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 125, 286
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 238
BstEII GGTNACC 1 cut(s) 352
BstKTI GATC 2 cut(s) 128, 289
BstMAI GTCTC 2 cut(s) 104, 170
BstMBI GATC 2 cut(s) 125, 286
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 332
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 330
BstSFI CTRYAG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 40
Csp6I GTAC 2 cut(s) 340, 404
CviAII CATG 1 cut(s) 349
CviJI RGCY 6 cut(s) 16, 40, 114, 147, 244, 307
CviKI_1 RGCY 6 cut(s) 16, 40, 114, 147, 244, 307
CviQI GTAC 2 cut(s) 340, 404
DpnI GATC 2 cut(s) 127, 288
DpnII GATC 2 cut(s) 125, 286
DraIII CACNNNGTG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 308
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 352
FaiI YATR 2 cut(s) 350, 402
FatI CATG 1 cut(s) 348
FblI GTMKAC 1 cut(s) 327
FspBI CTAG 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 100
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 352
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 328, 429
Hpy188I TCNGA 2 cut(s) 266, 381
Hpy188III TCNNGA 2 cut(s) 117, 310
Hpy8I GTNNAC 2 cut(s) 328, 429
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 4 cut(s) 105, 179, 260, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 1 cut(s) 352
Kzo9I GATC 2 cut(s) 125, 286
LmnI GCTCC 2 cut(s) 119, 241
LpnPI CCDG 8 cut(s) 54, 124, 130, 172, 189, 317, 344, 430
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 2 cut(s) 232, 352
MalI GATC 2 cut(s) 127, 288
MboI GATC 2 cut(s) 125, 286
MboII GAAGA 3 cut(s) 74, 190, 259
MnlI CCTC 7 cut(s) 15, 65, 82, 96, 99, 260, 354
MseI TTAA 2 cut(s) 303, 384
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 111
NdeII GATC 2 cut(s) 125, 286
NlaIII CATG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 330
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 330
RsaI GTAC 2 cut(s) 341, 405
RsaNI GTAC 2 cut(s) 340, 404
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 303, 384
Sau3AI GATC 2 cut(s) 125, 286
ScrFI CCNGG 1 cut(s) 332
SetI ASST 7 cut(s) 57, 116, 178, 246, 258, 309, 390
SfcI CTRYAG 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 124, 309, 327
TatI WGTACW 1 cut(s) 403
Tru1I TTAA 2 cut(s) 303, 384
Tru9I TTAA 2 cut(s) 303, 384
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspRI CASTG 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 24
XhoI CTCGAG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.