Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004985

Physical Location & Seq

Genomic Coordinates Reverse (-)

25456868 .. 25458404

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23270.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTGGAAGTATCTCACTATTGCTTTCAGTGTGCTTATCTTGCTCCTTGTTCTTATTGCCATGGTCTTCATGTGTCGAACCCAAGTTGCTAAAACTGTAGGTCCCTGGAAGACTGGATTGAGTGGGCAGTTGCAGAAAGCATTTATAACAGGAGTTCCCAAGTTGAACCGACCAGAACTGGAAACCGCATGTGAAGATTTCAGTAACATTATTAGCACAATTGAAGGTTGCATTGTGTACAAGGGAACACTGTCCAGTGGAGTTGAAATTGCCGTTGCATCAACTACAATGTCGTCTTTGAAAGATTGGTCCAAGCATGCAGAGAATGCTTACCGGAAAAAGATTGACGTACTGTCACGCGTGAATCATAAGAACTTTGTCAATCTTATTGGCTACTGTGAGGAGGATGAACCTTTTACTAGGATGATGGTGTTTGAGTATGCTCCGAATGGAAATCTCTTTGAGCATCTGCATATTGAAGAAATGGAACACCTTGATTGGAATTCGAGGATTAGGATCGTTATGGGAACTGCTTATTGTCTTCAATACATGCACCATGAGCTAAACCCACCTGTGTCACATCCTAACCTGACCTCGGCTTCTATCTTTTTGACGGATGATTACGCTGCTAAGATTGCGGAGATCTGTTTCTGGGCAGAAGCAATACGAAAGCCTAAGAATTCCAGCGATGATGATAAGGAGCATTCGGTTTTGCCACCCCTTGCCGATCCAGAAACAAACGTCTATAGCTTCGGAGTAATGCTACTTGAAATCATTTCCGGGAAGCTCCAAAACTCAGAAGAACATGGGTCCCTTCTATACTGGGCCTCTGCATATCTGAACGAGAATCGAAGCAACATGGTCGATCCAACCCTCAAGTCGTTCAAAAACGAAGAGCTGGATGTCCTGTGCGAGGTCATCAAAGATTGCATCCAAGAAGATCCAAGGCAGAGACCAACAATGAAGGATGTCACTAACAAACTGAAGGAAGTGATCCCCATCACTCCCAACCAAGCAGTCCCCAGACTCTCTCCCCTCTGGTGGGCGGAACTCGAGATCTTATCGGTCGAGGCGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042995 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

360

Amino Acids

40.77

Weight (kDa)

5.3

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18640 AT5G45840 AT5G45840
fragaria_vesca	FvH4_3g07660 FvH4_3g07660 FvH4_3g07660 FvH4_3g07660 FvH4_3g07660 FvH4_3g07660
malus_domestica	MD05G1299200.v1.1 MD10G1278700.v1.1
prunus_persica	Prupe.4G062600_v2.0.a1 Prupe.4G062600_v2.0.a1 Prupe.4G062600_v2.0.a1 Prupe.4G062600_v2.0.a1
pyrus_communis	pycom05g27710 pycom10g23270
rosa_chinensis	RchiOBHm_Chr5g0011021
rosa_laevigata	RLG00000031803
rosa_roxburghii	Rroxscaffold_1G00065380
rosa_rugosa	Rorug04G0454500 Rorug04G0454600 Rorug04G0454600 Rorug04G0454600
rosa_samantha	Rh5AG086800 Rh5BG081400 Rh5CG094200 Rh5DG081300
rosa_wichuraiana	Rw0G000120 Rw0G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccII	CGCG	1 cut(s)	360
AciI	CCGC	3 cut(s)	186, 638, 1046
AclWI	GGATC	5 cut(s)	524, 722, 860, 935, 988
AcsI	RAATTY	2 cut(s)	502, 679
AcuI	CTGAAG	1 cut(s)	1004
AfaI	GTAC	2 cut(s)	239, 351
AfiI	CCNNNNNNNGG	4 cut(s)	595, 913, 1041, 1042
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	8 cut(s)	166, 224, 266, 301, 479, 545, 770, 886
AhdI	GACNNNNNGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	4 cut(s)	562, 750, 787, 898
AluI	AGCT	4 cut(s)	562, 750, 787, 898
Alw26I	GTCTC	1 cut(s)	946
AlwI	GGATC	5 cut(s)	524, 722, 860, 935, 988
Ama87I	CYCGRG	1 cut(s)	1052
AoxI	GGCC	1 cut(s)	825
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	2 cut(s)	502, 679
AspS9I	GGNCC	4 cut(s)	101, 309, 810, 825
AsuC2I	CCSGG	1 cut(s)	781
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	3 cut(s)	101, 309, 810
BbsI	GAAGAC	3 cut(s)	58, 116, 533
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	421, 1007
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	844, 878
BciT130I	CCWGG	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	946
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	96, 745
BglII	AGATCT	2 cut(s)	642, 1056
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	2 cut(s)	106, 781
Bme18I	GGWCC	3 cut(s)	101, 309, 810
BmeRI	GACNNNNNGTC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	1052
BmgT120I	GGNCC	4 cut(s)	101, 309, 810, 825
BmiI	GGNNCC	3 cut(s)	103, 811, 812
BmrFI	CCNGG	2 cut(s)	106, 781
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	3 cut(s)	287, 475, 939
BmuI	ACTGGG	1 cut(s)	832
BpiI	GAAGAC	3 cut(s)	58, 116, 533
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	1 cut(s)	781
BsaBI	GATNNNNATC	2 cut(s)	515, 998
BsaI	GGTCTC	1 cut(s)	946
BsaJI	CCNNGG	4 cut(s)	60, 104, 594, 944
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	4 cut(s)	595, 913, 1041, 1042
Bse1I	ACTGG	4 cut(s)	118, 183, 255, 827
Bse8I	GATNNNNATC	2 cut(s)	515, 998
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	4 cut(s)	60, 104, 594, 944
BseGI	GGATG	7 cut(s)	412, 429, 580, 622, 907, 930, 973
BseJI	GATNNNNATC	2 cut(s)	515, 998
BseLI	CCNNNNNNNGG	4 cut(s)	595, 913, 1041, 1042
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	4 cut(s)	118, 183, 255, 827
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	613
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	1068
BshFI	GGCC	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	1068
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	2 cut(s)	334, 780
BslFI	GGGAC	3 cut(s)	87, 796, 1004
BslI	CCNNNNNNNGG	4 cut(s)	595, 913, 1041, 1042
BsmAI	GTCTC	1 cut(s)	946
BsmFI	GGGAC	3 cut(s)	87, 796, 1004
BsmI	GAATGC	2 cut(s)	331, 703
BsnI	GGCC	1 cut(s)	827
Bso31I	GGTCTC	1 cut(s)	946
BsoBI	CYCGRG	1 cut(s)	1052
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	3 cut(s)	186, 638, 1046
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	1 cut(s)	809
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	103, 811, 812
BspPI	GGATC	5 cut(s)	524, 722, 860, 935, 988
BspQI	GCTCTTC	1 cut(s)	888
BspTNI	GGTCTC	1 cut(s)	946
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	4 cut(s)	118, 183, 255, 827
BssECI	CCNNGG	4 cut(s)	60, 104, 594, 944
BssMI	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
BssT1I	CCWWGG	2 cut(s)	60, 944
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	4 cut(s)	97, 252, 354, 398
Bst6I	CTCTTC	1 cut(s)	888
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	630, 675, 796
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	911
BstF5I	GGATG	7 cut(s)	412, 429, 580, 622, 907, 930, 973
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	7 cut(s)	519, 645, 730, 868, 943, 996, 1059
BstMAI	GTCTC	1 cut(s)	946
BstMBI	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
BstMCI	CGRYCG	1 cut(s)	1068
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 326, 559, 635
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	3 cut(s)	192, 320, 553
BstSCI	CCNGG	2 cut(s)	104, 779
BstSFI	CTRYAG	2 cut(s)	96, 745
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	3 cut(s)	58, 116, 533
BstX2I	RGATCY	3 cut(s)	642, 940, 1056
BstYI	RGATCY	3 cut(s)	642, 940, 1056
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	702
BtsCI	GGATG	7 cut(s)	412, 429, 580, 622, 907, 930, 973
BtsIMutI	CAGTG	3 cut(s)	34, 248, 262
Cac8I	GCNNGC	1 cut(s)	318
Cfr13I	GGNCC	4 cut(s)	101, 309, 810, 825
Csp6I	GTAC	2 cut(s)	238, 350
CviAII	CATG	8 cut(s)	61, 70, 189, 317, 550, 557, 806, 859
CviJI	RGCY	8 cut(s)	393, 562, 599, 673, 750, 787, 827, 898
CviKI_1	RGCY	8 cut(s)	393, 562, 599, 673, 750, 787, 827, 898
CviQI	GTAC	2 cut(s)	238, 350
DdeI	CTNAG	3 cut(s)	630, 675, 796
DpnI	GATC	7 cut(s)	518, 644, 729, 867, 942, 995, 1058
DpnII	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
DriI	GACNNNNNGTC	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	888
Eam1105I	GACNNNNNGTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	888
EciI	GGCGGA	1 cut(s)	1061
Eco130I	CCWWGG	2 cut(s)	60, 944
Eco31I	GGTCTC	1 cut(s)	946
Eco47I	GGWCC	3 cut(s)	101, 309, 810
Eco57I	CTGAAG	1 cut(s)	1004
Eco88I	CYCGRG	1 cut(s)	1052
EcoNI	CCTNNNNNAGG	1 cut(s)	911
EcoO109I	RGGNCCY	2 cut(s)	101, 810
EcoRI	GAATTC	2 cut(s)	502, 679
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	60, 944
ErhI	CCWWGG	2 cut(s)	60, 944
FaeI	CATG	8 cut(s)	64, 73, 192, 320, 553, 560, 809, 862
FaqI	GGGAC	3 cut(s)	87, 796, 1004
FatI	CATG	8 cut(s)	60, 69, 188, 316, 549, 556, 805, 858
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	7 cut(s)	419, 436, 567, 629, 914, 917, 980
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	2 cut(s)	334, 780
Hin1II	CATG	8 cut(s)	64, 73, 192, 320, 553, 560, 809, 862
HinfI	GANTC	3 cut(s)	364, 847, 1026
HpaII	CCGG	2 cut(s)	334, 780
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	447, 755, 799, 840
Hpy188III	TCNNGA	2 cut(s)	731, 1054
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	4 cut(s)	218, 824, 958, 979
HpyCH4III	ACNGT	4 cut(s)	97, 252, 354, 398
HpyCH4IV	ACGT	2 cut(s)	348, 741
HpyCH4V	TGCA	8 cut(s)	133, 231, 278, 320, 472, 553, 833, 930
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 326, 559, 635
HpyF3I	CTNAG	3 cut(s)	630, 675, 796
HpySE526I	ACGT	2 cut(s)	348, 741
Hsp92II	CATG	8 cut(s)	64, 73, 192, 320, 553, 560, 809, 862
KflI	GGGWCCC	1 cut(s)	810
Kzo9I	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	4 cut(s)	48, 448, 700, 792
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	3 cut(s)	287, 475, 939
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	348, 741
MaeIII	GTNAC	4 cut(s)	203, 354, 576, 970
MalI	GATC	7 cut(s)	518, 644, 729, 867, 942, 995, 1058
MboI	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
MboII	GAAGA	8 cut(s)	58, 121, 206, 491, 533, 812, 905, 950
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	3 cut(s)	642, 940, 1056
MluCI	AATT	4 cut(s)	219, 267, 502, 679
MluI	ACGCGT	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	1020
MmeI	TCCRAC	1 cut(s)	893
MnlI	CCTC	9 cut(s)	394, 397, 501, 604, 838, 884, 907, 1046, 1063
MspI	CCGG	2 cut(s)	334, 780
MspR9I	CCNGG	2 cut(s)	106, 781
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	2 cut(s)	331, 703
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	40, 326, 559, 635
NciI	CCSGG	1 cut(s)	781
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
NlaIII	CATG	8 cut(s)	64, 73, 192, 320, 553, 560, 809, 862
NlaIV	GGNNCC	3 cut(s)	103, 811, 812
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	3 cut(s)	354, 576, 970
NspI	RCATGY	3 cut(s)	192, 320, 553
PaeI	GCATGC	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	1052
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	1070
PctI	GAATGC	2 cut(s)	331, 703
PfeI	GAWTC	2 cut(s)	364, 847
PfoI	TCCNGGA	1 cut(s)	779
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	1 cut(s)	1020
PpsI	GAGTC	1 cut(s)	1020
PpuMI	RGGWCCY	2 cut(s)	101, 810
PsiI	TTATAA	1 cut(s)	146
Psp5II	RGGWCCY	2 cut(s)	101, 810
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	103, 811, 812
PspPI	GGNCC	4 cut(s)	101, 309, 810, 825
PspPPI	RGGWCCY	2 cut(s)	101, 810
PsuI	RGATCY	3 cut(s)	642, 940, 1056
RsaI	GTAC	2 cut(s)	239, 351
RsaNI	GTAC	2 cut(s)	238, 350
SapI	GCTCTTC	1 cut(s)	888
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	7 cut(s)	516, 642, 727, 865, 940, 993, 1056
Sau96I	GGNCC	4 cut(s)	101, 309, 810, 825
SchI	GAGTC	1 cut(s)	1020
ScrFI	CCNGG	2 cut(s)	106, 781
SfaNI	GCATC	3 cut(s)	287, 475, 939
SfcI	CTRYAG	2 cut(s)	96, 745
Sfr274I	CTCGAG	1 cut(s)	1052
SinI	GGWCC	3 cut(s)	101, 309, 810
SlaI	CTCGAG	1 cut(s)	1052
SmlI	CTYRAG	2 cut(s)	875, 1052
SmoI	CTYRAG	2 cut(s)	875, 1052
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	4 cut(s)	219, 267, 502, 679
SsiI	CCGC	3 cut(s)	186, 638, 1046
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	104, 779
StyI	CCWWGG	2 cut(s)	60, 944
TaaI	ACNGT	4 cut(s)	97, 252, 354, 398
TaiI	ACGT	2 cut(s)	351, 744
TaqI	TCGA	6 cut(s)	76, 506, 850, 864, 1053, 1068
TaqII	GACCGA	1 cut(s)	1054
TasI	AATT	4 cut(s)	219, 267, 502, 679
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	364, 847
TscAI	CASTG	3 cut(s)	34, 255, 262
TseFI	GTSAC	3 cut(s)	354, 576, 970
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	3 cut(s)	354, 576, 970
TspDTI	ATGAA	3 cut(s)	58, 423, 977
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	3 cut(s)	34, 255, 262
VpaK11BI	GGWCC	3 cut(s)	101, 309, 810
XagI	CCTNNNNNAGG	1 cut(s)	911
XapI	RAATTY	2 cut(s)	502, 679
XceI	RCATGY	3 cut(s)	192, 320, 553
XhoI	CTCGAG	1 cut(s)	1052
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.