Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004985

Physical Location & Seq

Genomic Coordinates Forward (+)

60838982 .. 60850087

Gene Structure 11106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0454500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3090 bp

ATGATGTATGCAAGGAGAATAAAGTGCAGAAATCAGAGATGGATGCTTCAACTGTCCAATTCTATAAAGCCAAGCTACGTTTATCATGGTTCTTCTCAATCGTTGGGACGTATTACAGTTCCTGCAAACTACTACTCAGATGCTAGTTTTATTAGAAGCCGTCTCATAGATTCGTTCTCATTGCGAAGTGGTGTATCTGCTAATAGTTGCACTGGTTTGCAAGTGAGGTCTAATACGTGTTTGAGGGGTAGTCAGTTACGCTTCTACAGCTCAGAAGGCGATGGAAGAAACTCAAATGAGGGTAAACAGTTACCAGTGAAAGACGGTGCTAACTTTGATAAAGAAAAGACTTGGCAAGAAAAGGCTAGGAAAGATGTTAGGCCTTCTGATGCACATGCTCTACTTGGGGAGCAAGATCAAAAGGAATGGCTTAATAGTCACAAACTTACCATTGAGAGTAAAAAGAAAGAATCACCTTTTTTGACTAGACGAGAGAAGTTCAAAAATGAGTTTCTATGGAGGGTTGTTCCATGGGAGAAGATAACTGTTTCATGGGAGACGTTTCCTTACCATATCGATGAACCCACCAAAAATCTTTTGATGGAATGTGCTGCTGCTCATTTGAAACATAAAAAGTTCACTTCTACTTATGGTTCTCGTTTGACATCTTCAAGCGGGAGAATACTGCTTCAGAGCGCTCCAGGCACTGAGCTTTACCGTGAAAGATTAGTTAGAGCTCTTGCGCGAGATCTTCAAGTTCCACTACTTGTGCTTGACAGCAGTGTTCTTGCTCCTTATGATTTTGGTGATGATTGTCAAACGGAGTCTGAATCAGAGGATGATGGTGTGGAGGAGTGTACTTCTGAGTCAGAGATTGATGATGAGAATGATGCGAGTAATGAAGAAGAATGGACTAGTAGTAATGACGCAAAGTCAGATTGTAGTGATAAAGATGAAGTTGATGTGCATGCAAAGGCTGAAGCAGCCCTCAAGAAGCTTGTTCCTCTTGAACAATTTTCTAAGATGGTATCTGGGGAAATTAATGATGACTCTGAGTCCTCAAAGTCAGAAGCTGCTGAGCCTACCGATAAATCCAAAGAATCCAAACGACCACTGAAGAAAGGTGATCGGGTGAAGTATATTGGGCCTACTTTACGTGTTGAAGCTGATAACAGGATCATATTGGGGAAAATATCAACATCTGATGGTCCAAGGAAAGCATATACCATTTTTCATGGCAGGCCTTTACCGAATGGTCAACGTGGGGAGGTATATGAGGTGAGCGGAGATCGAATTGCTGTTATATTGGATATAAATGATGACACAGGAAGTGATGTGGATAAAGAGGAGAAAGGAGAAGACCAGCCTTCAAACCCACCAGTTTATTGGATACATGCAAATCATGTCGAGCATGTTGATGAGACTCAGACTGAGGATTGTTATATTGCAATGGAGGCCCTACGTGAGGTATTGCATGCCAAGCAACCTCTTATTGTCTATTTTCCAGACTCTTCTCAATGGTTGTCTAGGGCAGTTCCCAAGTCAAACAGGAAGGACTTTGTCAATAAGGTGCAAGAAATTTTTGACCAGTTATCAGGTCCTGTTGTTTTAATCTGTGGACAGAACAAAACTGAATCCGAGTCAAAGGAGAAAGAGAAATTTACGATGATACTACCAAATTTTGGTCGTCTTGCAAAGCTGCCTGTTTCTCTTAAGCGTCTTACTGAGGGACTTAAGGCAACAAAGCGATCTGATGAGGATGAAATATATAAGCTCTTTTCAAATGTGTTCTCCATACATCCCCCAAAGGAAGAAGAGGTACTTCGGACATTCAATAAACAGATTGAAGAAGATGGGAGAATTGTGATGTCAAGGAGCAATTTGAATGAATTACATAAGGTTCTTGAGGAGCATGAGCTATCATGCATGGACCTATTGCAAGTAGATACTGATGGTGTGATCTTGACAAAGCGAAAAGCTGAGAAAGTAGTTGGCTGGGCTAAAAGCCATTACTTATCATCTTGTCTTGTTCCTTCCGTTAAAGGTGACAGACTGCAGCTTCCTCGTGAAAGCCTTGAAGTAGCAATTTCACGTTTGAAGGAGCAAGAAAGTTTGTCTCGGAAACCCTCTCAAAATTTGAAGAACCTTGCAAAGGATGAATATGAGAGTAACTTTGTTTCAGCAGTTGTACCTCCTGGTGAAATTGGTGTCAGGTTTGATGATGTAGGTGCTCTGGAGGAGGTGAAGAAGGCTTTGAATGAACTAGTCATTCTTCCAATGAGAAGACCAGAGCTTTTCTCTCGTGGAAACTTGTTGCGGCCTTGCAAAGGGATATTACTTTTTGGTCCTCCTGGAACTGGGAAGACCCTTCTTGCCAAGGCACTTGCAACAGAAGCTGGGGCAAACTTTATCAGCATTACTGGTTCAACTCTAACATCAAAGTGGTTTGGAGATGCTGAAAAGCTGACCAAAGCTCTCTTCTCTTTTGCCAGCAAGCTTGCTCCCGTCATTATATTTGTCGATGAGGTTGATAGTTTGCTTGGTGCTCGTGGTGGTTCTTTTGAGCATGAGGCAACTAGAAGAATGAGAAATGAGTTCATGGCAGCTTGGGATGGATTGCGATCCAAAGACAGTCAAAGAATTCTTATTCTCGGAGCCACAAATCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCAGATGTTGAAAATCGCAAGAAGATTTTGAGTATCTTTCTTGCTCAAGAGAATCTAGAACCTGGTTTCCAATTTGATAAACTTTCAGAGGCAACCGAGGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCGGCTGCATATAGGCCTGTCCAGGAACTATTAGAAGAAGAAACCAAGGACAGCAAAAGTGATTTATCTCCACCTTTAAGGCCACTTAATTTAGATGACTTTATTCAATCAAAAGCCAAGGTTGGGCCATCTGTGTCATATGATGCTGCAAGCATGAACGAGCTTAGGAAATGGAATGAGCAATACGGTGAGGGCGGAAGCAGGAGAAAATCACCATTTGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042995 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

1029

Amino Acids

115.93

Weight (kDa)

5.92

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	640 - 697	5.7e-07	Domain of unknown function (DUF7751)
AAA	PF00004	778 - 908	8.8e-37	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	932 - 969	1.1e-10	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18640 AT5G45840 AT5G45840
fragaria_vesca	FvH4_3g07660 FvH4_3g07660 FvH4_3g07660 FvH4_3g07660 FvH4_3g07660 FvH4_3g07660
malus_domestica	MD05G1299200.v1.1 MD10G1278700.v1.1
prunus_persica	Prupe.4G062600_v2.0.a1 Prupe.4G062600_v2.0.a1 Prupe.4G062600_v2.0.a1 Prupe.4G062600_v2.0.a1
pyrus_communis	pycom05g27710 pycom10g23270
rosa_chinensis	RchiOBHm_Chr5g0011021
rosa_laevigata	RLG00000031803
rosa_roxburghii	Rroxscaffold_1G00065380
rosa_rugosa	Rorug04G0454500 Rorug04G0454600 Rorug04G0454600 Rorug04G0454600
rosa_samantha	Rh5AG086800 Rh5BG081400 Rh5CG094200 Rh5DG081300
rosa_wichuraiana	Rw0G000120 Rw0G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1682
AccBSI	CCGCTC	1 cut(s)	1284
AccII	CGCG	1 cut(s)	745
AciI	CCGC	5 cut(s)	675, 1284, 2317, 2864, 3057
AclWI	GGATC	2 cut(s)	1184, 2616
AcoI	YGGCCR	1 cut(s)	2666
AcsI	RAATTY	5 cut(s)	1578, 1658, 1678, 2134, 2640
AcuI	CTGAAG	3 cut(s)	674, 999, 1136
AfaI	GTAC	3 cut(s)	859, 1821, 2190
AfeI	AGCGCT	1 cut(s)	697
AfiI	CCNNNNNNNGG	7 cut(s)	1465, 1682, 2152, 2327, 2357, 2664, 2985
AflII	CTTAAG	2 cut(s)	1712, 1733
AflIII	ACRYGT	2 cut(s)	236, 1156
AhdI	GACNNNNNGTC	2 cut(s)	931, 1054
AhlI	ACTAGT	2 cut(s)	914, 2263
AjnI	CCWGG	5 cut(s)	700, 2194, 2350, 2788, 2883
AjuI	GAANNNNNNNTTGG	2 cut(s)	2462, 2494
AloI	GAACNNNNNNTCC	2 cut(s)	2778, 2810
Alw21I	GWGCWC	3 cut(s)	739, 2233, 2548
Alw26I	GTCTC	4 cut(s)	167, 551, 1415, 2121
AlwI	GGATC	2 cut(s)	1184, 2616
AlwNI	CAGNNNCTG	5 cut(s)	122, 707, 1073, 1601, 2396
Aor51HI	AGCGCT	1 cut(s)	697
AoxI	GGCC	9 cut(s)	380, 1145, 1241, 1455, 2318, 2666, 2876, 2942, 2987
ApeKI	GCWGC	9 cut(s)	611, 614, 983, 1073, 1699, 2056, 2603, 2867, 3008
ApoI	RAATTY	5 cut(s)	1578, 1658, 1678, 2134, 2640
AseI	ATTAAT	1 cut(s)	1041
AspLEI	GCGC	2 cut(s)	698, 745
AspS9I	GGNCC	7 cut(s)	1145, 1208, 1456, 1598, 1930, 2345, 2987
AvaII	GGWCC	4 cut(s)	1208, 1598, 1930, 2345
BanII	GRGCYC	1 cut(s)	739
BarI	GAAGNNNNNNTAC	2 cut(s)	1803, 1835
BauI	CACGAG	3 cut(s)	2064, 2301, 2547
BbsI	GAAGAC	3 cut(s)	1365, 2290, 2369
Bbv12I	GWGCWC	3 cut(s)	739, 2233, 2548
BbvI	GCAGC	9 cut(s)	598, 601, 995, 1060, 1686, 2068, 2615, 2854, 2995
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	2045, 2079
BciT130I	CCWGG	5 cut(s)	702, 2196, 2352, 2790, 2885
BciVI	GTATCC	2 cut(s)	1383, 2822
BcoDI	GTCTC	4 cut(s)	167, 551, 1415, 2121
BcuI	ACTAGT	2 cut(s)	914, 2263
BfaI	CTAG	8 cut(s)	144, 366, 486, 915, 1527, 2264, 2577, 2783
BfmI	CTRYAG	2 cut(s)	265, 2054
BfoI	RGCGCY	1 cut(s)	699
BfrI	CTTAAG	2 cut(s)	1712, 1733
BfuI	GTATCC	2 cut(s)	1383, 2822
BglII	AGATCT	1 cut(s)	748
BlpI	GCTNAGC	1 cut(s)	1077
Bme1390I	CCNGG	5 cut(s)	702, 2196, 2352, 2790, 2885
Bme18I	GGWCC	4 cut(s)	1208, 1598, 1930, 2345
BmeRI	GACNNNNNGTC	2 cut(s)	931, 1054
BmgT120I	GGNCC	7 cut(s)	1145, 1208, 1456, 1598, 1930, 2345, 2987
BmiI	GGNNCC	1 cut(s)	2656
BmrFI	CCNGG	5 cut(s)	702, 2196, 2352, 2790, 2885
BmrI	ACTGGG	1 cut(s)	2367
BmsI	GCATC	7 cut(s)	33, 130, 379, 880, 2443, 2674, 2995
BmuI	ACTGGG	1 cut(s)	2367
BpiI	GAAGAC	3 cut(s)	1365, 2290, 2369
BplI	GAGNNNNNCTC	4 cut(s)	2282, 2314, 2816, 2848
BpmI	CTGGAG	2 cut(s)	684, 2255
Bpu10I	CCTNAGC	1 cut(s)	3026
Bpu1102I	GCTNAGC	1 cut(s)	1077
BpuEI	CTTGAG	3 cut(s)	974, 1925, 2757
Bsa29I	ATCGAT	1 cut(s)	576
BsaAI	YACGTR	3 cut(s)	237, 1157, 1463
BsaBI	GATNNNNATC	1 cut(s)	2620
BsaJI	CCNNGG	6 cut(s)	530, 1211, 2376, 2823, 2907, 2979
Bsc4I	CCNNNNNNNGG	7 cut(s)	1465, 1682, 2152, 2327, 2357, 2664, 2985
Bse1I	ACTGG	6 cut(s)	217, 314, 1379, 1588, 2362, 2425
Bse3DI	GCAATG	2 cut(s)	179, 1455
Bse8I	GATNNNNATC	1 cut(s)	2620
BseBI	CCWGG	5 cut(s)	702, 2196, 2352, 2790, 2885
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	6 cut(s)	530, 1211, 2376, 2823, 2907, 2979
BseGI	GGATG	6 cut(s)	48, 844, 1765, 1798, 2161, 2617
BseJI	GATNNNNATC	1 cut(s)	2620
BseLI	CCNNNNNNNGG	7 cut(s)	1465, 1682, 2152, 2327, 2357, 2664, 2985
BseMI	GCAATG	2 cut(s)	179, 1455
BseNI	ACTGG	6 cut(s)	217, 314, 1379, 1588, 2362, 2425
BseRI	GAGGAG	4 cut(s)	866, 1361, 1922, 2252
BseXI	GCAGC	9 cut(s)	598, 601, 995, 1060, 1686, 2068, 2615, 2854, 2995
BseYI	CCCAGC	2 cut(s)	1995, 2396
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	9 cut(s)	382, 1147, 1243, 1457, 2320, 2668, 2878, 2944, 2989
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	3 cut(s)	739, 2233, 2548
BslFI	GGGAC	2 cut(s)	120, 1743
BslI	CCNNNNNNNGG	7 cut(s)	1465, 1682, 2152, 2327, 2357, 2664, 2985
BsmAI	GTCTC	4 cut(s)	167, 551, 1415, 2121
BsmBI	CGTCTC	2 cut(s)	167, 551
BsmFI	GGGAC	2 cut(s)	120, 1743
BsnI	GGCC	9 cut(s)	382, 1147, 1243, 1457, 2320, 2668, 2878, 2944, 2989
Bsp1286I	GDGCHC	3 cut(s)	739, 2233, 2548
Bsp143I	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
Bsp1720I	GCTNAGC	1 cut(s)	1077
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	5 cut(s)	675, 1284, 2317, 2864, 3057
BspANI	GGCC	9 cut(s)	382, 1147, 1243, 1457, 2320, 2668, 2878, 2944, 2989
BspDI	ATCGAT	1 cut(s)	576
BspFNI	CGCG	1 cut(s)	745
BspLI	GGNNCC	1 cut(s)	2656
BspMAI	CTGCAG	1 cut(s)	2058
BspPI	GGATC	2 cut(s)	1184, 2616
BspTI	CTTAAG	2 cut(s)	1712, 1733
BsrBI	CCGCTC	1 cut(s)	1284
BsrDI	GCAATG	2 cut(s)	179, 1455
BsrI	ACTGG	6 cut(s)	217, 314, 1379, 1588, 2362, 2425
BssECI	CCNNGG	6 cut(s)	530, 1211, 2376, 2823, 2907, 2979
BssMI	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
BssSI	CACGAG	3 cut(s)	2064, 2301, 2547
BssT1I	CCWWGG	5 cut(s)	530, 1211, 2376, 2907, 2979
Bst2BI	CACGAG	3 cut(s)	2064, 2301, 2547
Bst2UI	CCWGG	5 cut(s)	702, 2196, 2352, 2790, 2885
Bst4CI	ACNGT	8 cut(s)	54, 118, 309, 326, 547, 719, 2633, 3050
Bst6I	CTCTTC	3 cut(s)	1516, 1809, 2483
BstAFI	CTTAAG	2 cut(s)	1712, 1733
BstBAI	YACGTR	3 cut(s)	237, 1157, 1463
BstC8I	GCNNGC	7 cut(s)	969, 1241, 1476, 2491, 2495, 2499, 3013
BstDSI	CCRYGG	1 cut(s)	530
BstENI	CCTNNNNNAGG	3 cut(s)	1463, 2150, 2325
BstF5I	GGATG	6 cut(s)	48, 844, 1765, 1798, 2161, 2617
BstFNI	CGCG	1 cut(s)	745
BstH2I	RGCGCY	1 cut(s)	699
BstHHI	GCGC	2 cut(s)	698, 745
BstKTI	GATC	8 cut(s)	418, 751, 1129, 1179, 1291, 1751, 1962, 2624
BstMAI	GTCTC	4 cut(s)	167, 551, 1415, 2121
BstMBI	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
BstMWI	GCNNNNNNNGC	7 cut(s)	267, 276, 702, 983, 1454, 1480, 2393
BstNI	CCWGG	5 cut(s)	702, 2196, 2352, 2790, 2885
BstNSI	RCATGY	5 cut(s)	398, 971, 1397, 1415, 1478
BstSCI	CCNGG	5 cut(s)	700, 2194, 2350, 2788, 2883
BstSFI	CTRYAG	2 cut(s)	265, 2054
BstUI	CGCG	1 cut(s)	745
BstV1I	GCAGC	9 cut(s)	598, 601, 995, 1060, 1686, 2068, 2615, 2854, 2995
BstV2I	GAAGAC	3 cut(s)	1365, 2290, 2369
BstX2I	RGATCY	1 cut(s)	748
BstXI	CCANNNNNNTGG	1 cut(s)	1386
BstYI	RGATCY	1 cut(s)	748
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	2 cut(s)	1383, 2822
BsuRI	GGCC	9 cut(s)	382, 1147, 1243, 1457, 2320, 2668, 2878, 2944, 2989
BsuTUI	ATCGAT	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	530
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	6 cut(s)	48, 844, 1765, 1798, 2161, 2617
BtsI	GCAGTG	2 cut(s)	787, 2845
BtsIMutI	CAGTG	6 cut(s)	210, 321, 705, 787, 1112, 2845
Cac8I	GCNNGC	7 cut(s)	969, 1241, 1476, 2491, 2495, 2499, 3013
CaiI	CAGNNNCTG	5 cut(s)	122, 707, 1073, 1601, 2396
CfoI	GCGC	2 cut(s)	698, 745
Cfr13I	GGNCC	7 cut(s)	1145, 1208, 1456, 1598, 1930, 2345, 2987
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	2 cut(s)	935, 1706
CsiI	ACCWGGT	1 cut(s)	2788
Csp6I	GTAC	3 cut(s)	858, 1820, 2189
CviQI	GTAC	3 cut(s)	858, 1820, 2189
DpnI	GATC	8 cut(s)	417, 750, 1128, 1178, 1290, 1750, 1961, 2623
DpnII	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
DriI	GACNNNNNGTC	2 cut(s)	931, 1054
EaeI	YGGCCR	1 cut(s)	2666
Eam1104I	CTCTTC	3 cut(s)	1516, 1809, 2483
Eam1105I	GACNNNNNGTC	2 cut(s)	931, 1054
EarI	CTCTTC	3 cut(s)	1516, 1809, 2483
EciI	GGCGGA	1 cut(s)	3072
Ecl136II	GAGCTC	1 cut(s)	737
Eco130I	CCWWGG	5 cut(s)	530, 1211, 2376, 2907, 2979
Eco147I	AGGCCT	3 cut(s)	382, 1243, 2878
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	4 cut(s)	1208, 1598, 1930, 2345
Eco47III	AGCGCT	1 cut(s)	697
Eco53kI	GAGCTC	1 cut(s)	737
Eco57I	CTGAAG	3 cut(s)	674, 999, 1136
EcoICRI	GAGCTC	1 cut(s)	737
EcoNI	CCTNNNNNAGG	3 cut(s)	1463, 2150, 2325
EcoO109I	RGGNCCY	2 cut(s)	1456, 1598
EcoRI	GAATTC	1 cut(s)	2640
EcoRII	CCWGG	5 cut(s)	700, 2194, 2350, 2788, 2883
EcoT14I	CCWWGG	5 cut(s)	530, 1211, 2376, 2907, 2979
EcoT22I	ATGCAT	1 cut(s)	1928
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	5 cut(s)	530, 1211, 2376, 2907, 2979
Esp3I	CGTCTC	2 cut(s)	167, 551
FalI	AAGNNNNNCTT	2 cut(s)	1806, 1838
FaqI	GGGAC	2 cut(s)	120, 1743
FauI	CCCGC	1 cut(s)	668
FauNDI	CATATG	1 cut(s)	3001
FokI	GGATG	6 cut(s)	55, 851, 1772, 1785, 2168, 2624
FriOI	GRGCYC	1 cut(s)	739
FspBI	CTAG	8 cut(s)	144, 366, 486, 915, 1527, 2264, 2577, 2783
GlaI	GCGC	2 cut(s)	697, 744
GsaI	CCCAGC	2 cut(s)	1999, 2400
GsuI	CTGGAG	2 cut(s)	684, 2255
HaeII	RGCGCY	1 cut(s)	699
HaeIII	GGCC	9 cut(s)	382, 1147, 1243, 1457, 2320, 2668, 2878, 2944, 2989
HgaI	GACGC	2 cut(s)	935, 1706
HhaI	GCGC	2 cut(s)	698, 745
Hin6I	GCGC	2 cut(s)	696, 743
HinP1I	GCGC	2 cut(s)	696, 743
HincII	GTYRAC	1 cut(s)	1259
HindII	GTYRAC	1 cut(s)	1259
HindIII	AAGCTT	2 cut(s)	995, 2495
Hpy166II	GTNNAC	5 cut(s)	305, 639, 858, 1259, 1619
Hpy188III	TCNNGA	9 cut(s)	991, 1007, 1505, 1904, 1963, 2066, 2234, 2774, 2783
Hpy8I	GTNNAC	5 cut(s)	305, 639, 858, 1259, 1619
Hpy99I	CGWCG	1 cut(s)	2700
HpyAV	CCTTC	9 cut(s)	269, 393, 1377, 1546, 2043, 2092, 2242, 2378, 2703
HpyCH4III	ACNGT	8 cut(s)	54, 118, 309, 326, 547, 719, 2633, 3050
HpyCH4IV	ACGT	8 cut(s)	78, 109, 236, 560, 1156, 1261, 1462, 2092
HpyF10VI	GCNNNNNNNGC	7 cut(s)	267, 276, 702, 983, 1454, 1480, 2393
HpySE526I	ACGT	8 cut(s)	78, 109, 236, 560, 1156, 1261, 1462, 2092
HspAI	GCGC	2 cut(s)	696, 743
Kzo9I	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
LmnI	GCTCC	8 cut(s)	409, 703, 796, 1875, 1909, 2101, 2506, 2654
Lsp1109I	GCAGC	9 cut(s)	598, 601, 995, 1060, 1686, 2068, 2615, 2854, 2995
LweI	GCATC	7 cut(s)	33, 130, 379, 880, 2443, 2674, 2995
MabI	ACCWGGT	1 cut(s)	2788
MaeI	CTAG	8 cut(s)	144, 366, 486, 915, 1527, 2264, 2577, 2783
MaeII	ACGT	8 cut(s)	78, 109, 236, 560, 1156, 1261, 1462, 2092
MaeIII	GTNAC	5 cut(s)	255, 309, 437, 2045, 2168
MalI	GATC	8 cut(s)	417, 750, 1128, 1178, 1290, 1750, 1961, 2623
MbiI	CCGCTC	1 cut(s)	1284
MboI	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	3 cut(s)	739, 2233, 2548
MlyI	GAGTC	7 cut(s)	833, 875, 1043, 1064, 1417, 1502, 1649
Mph1103I	ATGCAT	1 cut(s)	1928
MseI	TTAA	8 cut(s)	432, 1041, 1610, 1713, 1734, 2040, 2939, 2949
MslI	CAYNNNNRTG	3 cut(s)	576, 1416, 2440
MspCI	CTTAAG	2 cut(s)	1712, 1733
MspR9I	CCNGG	5 cut(s)	702, 2196, 2352, 2790, 2885
MvaI	CCWGG	5 cut(s)	702, 2196, 2352, 2790, 2885
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	7 cut(s)	267, 276, 702, 983, 1454, 1480, 2393
NcoI	CCATGG	1 cut(s)	530
NdeI	CATATG	1 cut(s)	3001
NdeII	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
NlaIV	GGNNCC	1 cut(s)	2656
NmuCI	GTSAC	2 cut(s)	437, 2045
NsiI	ATGCAT	1 cut(s)	1928
NspI	RCATGY	5 cut(s)	398, 971, 1397, 1415, 1478
PaeI	GCATGC	2 cut(s)	971, 1478
PceI	AGGCCT	3 cut(s)	382, 1243, 2878
PfeI	GAWTC	6 cut(s)	170, 470, 830, 1100, 1634, 2779
PflFI	GACNNNGTC	1 cut(s)	1559
PflMI	CCANNNNNTGG	1 cut(s)	1682
PfoI	TCCNGGA	2 cut(s)	2350, 2883
PleI	GAGTC	7 cut(s)	832, 874, 1043, 1063, 1417, 1502, 1648
PpsI	GAGTC	7 cut(s)	832, 874, 1043, 1063, 1417, 1502, 1648
Ppu21I	YACGTR	3 cut(s)	237, 1157, 1463
PpuMI	RGGWCCY	1 cut(s)	1598
PshBI	ATTAAT	1 cut(s)	1041
Psp124BI	GAGCTC	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	1598
Psp6I	CCWGG	5 cut(s)	700, 2194, 2350, 2788, 2883
PspFI	CCCAGC	2 cut(s)	1995, 2396
PspGI	CCWGG	5 cut(s)	700, 2194, 2350, 2788, 2883
PspN4I	GGNNCC	1 cut(s)	2656
PspPI	GGNCC	7 cut(s)	1145, 1208, 1456, 1598, 1930, 2345, 2987
PspPPI	RGGWCCY	1 cut(s)	1598
PstI	CTGCAG	1 cut(s)	2058
PstNI	CAGNNNCTG	5 cut(s)	122, 707, 1073, 1601, 2396
PsuI	RGATCY	1 cut(s)	748
PsyI	GACNNNGTC	1 cut(s)	1559
RsaI	GTAC	3 cut(s)	859, 1821, 2190
RsaNI	GTAC	3 cut(s)	858, 1820, 2189
RseI	CAYNNNNRTG	3 cut(s)	576, 1416, 2440
SacI	GAGCTC	1 cut(s)	739
SaqAI	TTAA	8 cut(s)	432, 1041, 1610, 1713, 1734, 2040, 2939, 2949
Sau3AI	GATC	8 cut(s)	415, 748, 1126, 1176, 1288, 1748, 1959, 2621
Sau96I	GGNCC	7 cut(s)	1145, 1208, 1456, 1598, 1930, 2345, 2987
SchI	GAGTC	7 cut(s)	833, 875, 1043, 1064, 1417, 1502, 1649
ScrFI	CCNGG	5 cut(s)	702, 2196, 2352, 2790, 2885
SduI	GDGCHC	3 cut(s)	739, 2233, 2548
SexAI	ACCWGGT	1 cut(s)	2788
SfaNI	GCATC	7 cut(s)	33, 130, 379, 880, 2443, 2674, 2995
SfcI	CTRYAG	2 cut(s)	265, 2054
SinI	GGWCC	4 cut(s)	1208, 1598, 1930, 2345
SmiMI	CAYNNNNRTG	3 cut(s)	576, 1416, 2440
SmlI	CTYRAG	5 cut(s)	989, 1712, 1733, 1904, 2772
SmoI	CTYRAG	5 cut(s)	989, 1712, 1733, 1904, 2772
SpeI	ACTAGT	2 cut(s)	914, 2263
SphI	GCATGC	2 cut(s)	971, 1478
SseBI	AGGCCT	3 cut(s)	382, 1243, 2878
SsiI	CCGC	5 cut(s)	675, 1284, 2317, 2864, 3057
SspMI	CTAG	8 cut(s)	144, 366, 486, 915, 1527, 2264, 2577, 2783
SstI	GAGCTC	1 cut(s)	739
StuI	AGGCCT	3 cut(s)	382, 1243, 2878
StyD4I	CCNGG	5 cut(s)	700, 2194, 2350, 2788, 2883
StyI	CCWWGG	5 cut(s)	530, 1211, 2376, 2907, 2979
TaaI	ACNGT	8 cut(s)	54, 118, 309, 326, 547, 719, 2633, 3050
TaiI	ACGT	8 cut(s)	81, 112, 239, 563, 1159, 1264, 1465, 2095
TaqI	TCGA	4 cut(s)	576, 1291, 1407, 2520
TatI	WGTACW	1 cut(s)	857
TauI	GCSGC	2 cut(s)	2320, 2867
TfiI	GAWTC	6 cut(s)	170, 470, 830, 1100, 1634, 2779
Tru1I	TTAA	8 cut(s)	432, 1041, 1610, 1713, 1734, 2040, 2939, 2949
Tru9I	TTAA	8 cut(s)	432, 1041, 1610, 1713, 1734, 2040, 2939, 2949
TscAI	CASTG	6 cut(s)	217, 321, 712, 787, 1119, 2845
TseFI	GTSAC	2 cut(s)	437, 2045
TseI	GCWGC	9 cut(s)	611, 614, 983, 1073, 1699, 2056, 2603, 2867, 3008
Tsp45I	GTSAC	2 cut(s)	437, 2045
TspGWI	ACGGA	2 cut(s)	836, 2026
TspRI	CASTG	6 cut(s)	217, 321, 712, 787, 1119, 2845
Tth111I	GACNNNGTC	1 cut(s)	1559
Van91I	CCANNNNNTGG	1 cut(s)	1682
Vha464I	CTTAAG	2 cut(s)	1712, 1733
VpaK11BI	GGWCC	4 cut(s)	1208, 1598, 1930, 2345
VspI	ATTAAT	1 cut(s)	1041
XagI	CCTNNNNNAGG	3 cut(s)	1463, 2150, 2325
XapI	RAATTY	5 cut(s)	1578, 1658, 1678, 2134, 2640
XbaI	TCTAGA	1 cut(s)	2782
XceI	RCATGY	5 cut(s)	398, 971, 1397, 1415, 1478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1383
XspI	CTAG	8 cut(s)	144, 366, 486, 915, 1527, 2264, 2577, 2783
Zsp2I	ATGCAT	1 cut(s)	1928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.