pycom10g28090

ATP synthase subunit H

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017514
Physical Location & Seq
Reverse (-)
28812960 .. 28814599
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGGTAGATGGAAGACATTTCGCAAAAACAATCCCAATCTTCGTCATCCCCTTCCCATCACAGCCCAAAATCAGAGGTTGGAGGCTTGGAGCCTCAGGCAACGTACAAATTGTTTTTGAAGACAATCATATCATTCATTCGCGATCAACTGTTTGTGGATTTGACTGTTCGAAGAAGGGGTCGGAATTGGAGAAGATCGAAATGGGTTTTGTAGTTACAACTCTGATCTTTGCAATGGTGGGCGTAATTGCTTCCCTCATGGTCAGAATCTGCTGTGGCAGAGGCGCATCGGCCAATTTGCTTCACCTTACACTTGTTATCACAGCGGTAGTGTGCTGTTGGATGATGTGGGCAATCGTATACCTTGCACAGATGAAACCACTCATTGTTCCGATCCTCACTGAAGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04145 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04721 map04966 map05110 map05120 map05323
Pfam Domains
Protein Families
ATP_synt_H

Protein Analysis

138

Amino Acids

15.09

Weight (kDa)

8.62

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_synt_H PF05493 70 - 134 6.2e-19 ATP synthase subunit H
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55290 AT5G55290 AT5G55290
fragaria_vesca FvH4_3g01010
malus_domestica MD05G1357400.v1.1 MD10G1331400.v1.1
prunus_persica Prupe.4G010800_v2.0.a1
pyrus_communis pycom10g28090
rosa_chinensis RchiOBHm_Chr5g0001541
rosa_roxburghii Rroxscaffold_1G00074860
rosa_samantha Rh5BG014700
rosa_wichuraiana Rw5G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 142
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 291
AfaI GTAC 1 cut(s) 105
AgsI TTSAA 1 cut(s) 119
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 270
AoxI GGCC 1 cut(s) 291
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspLEI GCGC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 94
BbsI GAAGAC 2 cut(s) 19, 126
BccI CCATC 2 cut(s) 2, 64
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 2 cut(s) 19, 126
Bpu14I TTCGAA 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 240
BseGI GGATG 2 cut(s) 45, 348
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 293
BsnI GGCC 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 170
Bsp143I GATC 4 cut(s) 143, 195, 225, 393
Bsp68I TCGCGA 1 cut(s) 142
BspACI CCGC 1 cut(s) 326
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 107
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 388
BspT104I TTCGAA 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 240
BssMI GATC 4 cut(s) 143, 195, 225, 393
BssNAI GTATAC 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 151, 167
BstBI TTCGAA 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 45, 348
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 4 cut(s) 146, 198, 228, 396
BstMBI GATC 4 cut(s) 143, 195, 225, 393
BstUI CGCG 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 19, 126
BstZ17I GTATAC 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 2 cut(s) 45, 348
BtsIMutI CAGTG 1 cut(s) 399
BtuMI TCGCGA 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 270
CfoI GCGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 259
CviJI RGCY 4 cut(s) 64, 85, 92, 293
CviKI_1 RGCY 4 cut(s) 64, 85, 92, 293
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 94
DpnI GATC 4 cut(s) 145, 197, 227, 395
DpnII GATC 4 cut(s) 143, 195, 225, 393
EaeI YGGCCR 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 94
FaeI CATG 1 cut(s) 262
FaiI YATR 3 cut(s) 129, 260, 361
FatI CATG 1 cut(s) 258
FblI GTMKAC 1 cut(s) 360
FokI GGATG 2 cut(s) 32, 355
GlaI GCGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 293
HhaI GCGC 1 cut(s) 287
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 1 cut(s) 267
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 5 cut(s) 74, 184, 225, 266, 393
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 61, 169, 398
HpyCH4III ACNGT 2 cut(s) 151, 167
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 233, 368
HpyF3I CTNAG 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 4 cut(s) 143, 195, 225, 393
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 1 cut(s) 81
LweI GCATC 1 cut(s) 296
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 145, 197, 227, 395
MboI GATC 4 cut(s) 143, 195, 225, 393
MboII GAAGA 5 cut(s) 24, 31, 131, 184, 205
MluCI AATT 4 cut(s) 108, 185, 246, 295
MmeI TCCRAC 3 cut(s) 59, 162, 320
MnlI CCTC 6 cut(s) 68, 75, 103, 266, 275, 407
MspA1I CMGCKG 1 cut(s) 326
MvnI CGCG 1 cut(s) 142
NdeII GATC 4 cut(s) 143, 195, 225, 393
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 91
NruI TCGCGA 1 cut(s) 142
NspV TTCGAA 1 cut(s) 170
PfeI GAWTC 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 270
RruI TCGCGA 1 cut(s) 142
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
Sau3AI GATC 4 cut(s) 143, 195, 225, 393
SetI ASST 4 cut(s) 79, 105, 309, 366
SfaNI GCATC 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 170
SgeI CNNG 6 cut(s) 98, 108, 153, 271, 326, 377
Sse9I AATT 4 cut(s) 108, 185, 246, 295
SsiI CCGC 1 cut(s) 326
TaaI ACNGT 2 cut(s) 151, 167
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 170, 198
TasI AATT 4 cut(s) 108, 185, 246, 295
TfiI GAWTC 1 cut(s) 267
TscAI CASTG 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 125, 389
TspRI CASTG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.