Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0021273

Physical Location & Seq

Genomic Coordinates Reverse (-)

103863 .. 107834

Gene Structure 3972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00120.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGAGCCGGACTCTGCAATTTCGATGCCTTCCCGGTATCCCATTCGTCCTCCTCGTCAGCTTTCATGGGTGAATCTCTCCAGAAATCTCATACTTGCATATCAAAGCCTTGGCGTGGTTTATGGGGACCTCAGTACTTCTCCTCTCTATGTTTATAGTAGCACATTCACAGGGAAGCTGCACAACCATAACTCCGAGGAAGTGATATTTGGTGCATTTTCCTTAATCTTCTGGACCATTACAATGGTACCCTTGCTCAAGTACGTCTTTATCCTATTGAGTGCCGACGATAATGGTGAAGGTGGGACTTTTGCGCTTTACTCGCTTCTTTGCCGCCATGCAAAGTTTAGTTTACTTCCCAACCAGCAAGCAGCTGATGAGGAGCTCTCAGCTTACAAATACGGTCCTTCATCACAGGTTGTAAGCTCGTCCCGTTTAAAGATGTTTTTGGAGAAGCATAAAAGGTTACGGACGGCCCTACTGGTGGTGGTATTGTTAGGCGCTTGCATGGTCATAGGAGATGGTGTACTCACTCCAGCAATTTCAGTTTTATCATCAGTATCAGGGTTACAAGTTACAGAGGAGAAGTTAACTGATGGTGAACTCCTCTTGCTTGCCTGTGTCATATTGGTTGGCCTGTTTGCTCTGCAGCATTGTGGCACCCACAGGGTAGCATTTTTGTTTGCACCTATTGTAATAATCTGGTTGATATCAATATTTTCCGTTGGGCTGTACAATACAATACATTGGAACCCGGCTGTTGTTCGTGCATTATCACCCCATTATATTATCAAGTTTTTCCGTGAGACTGGTAAAGATGGTTGGATTTCTCTTGGTGGGGTTCTTCTCTCGATAACTGGTACTGAAGCTATGTTTGCAGATCTTGGTCATTTCACTGCCTTATCGATAAGACTTGCGTTTGCATTTGCTATATATCCTTGTTTGGTAGTACAATACATGGGTCAGGCTGCTTTCCTGTCAAAAAATCCTGACCACAATCTTTACAGTTTCTATGACTCAATACCTGCTCCTGTATTTTGGCCTGTCTTTGTTGTTGCCACCCTCGCATCAATTGTTGGAAGCCAGGCTGTTATAACTGCCACTTTCTCAATCATCAAGCAATGTCATGCCCTTGGTTGTTTCCCCCGAGTAAAAGTTGTCCACACCTCAAAGCATATATATGGGCAGGTCTACATTCCAGAAATTAATTGGATACTTATCGATCCTTACTCTTGCCATAACTATTGGATTTCAAGACACTACTTTAATTGGAAATGCTTACGGACTTGCTTGCATGATGGTTATGTTTATCACGACATTCCTTATGGCACTGGTAATAATCTTTGTTTGGCAGAAAAGTGTGGTTCTGGCTGCGATTTTTCTTATCTTTTTCTGGTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071804 GO:0071805 GO:0071840 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

468

Amino Acids

52.01

Weight (kDa)

7.92

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021273)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g00120
rosa_multiflora	Rmu_co8216090.1_g000001 Rmu_co8308685.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370170
rosa_samantha	Rh3AG319900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1094
Acc36I	ACCTGC	2 cut(s)	1033, 1177
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	2 cut(s)	247, 659
AccI	GTMKAC	1 cut(s)	1191
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	1217
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	7 cut(s)	136, 249, 263, 528, 734, 862, 951
AfiI	CCNNNNNNNGG	2 cut(s)	115, 484
AgsI	TTSAA	1 cut(s)	1254
AjnI	CCWGG	1 cut(s)	1083
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	7 cut(s)	61, 178, 374, 385, 392, 426, 869
AluI	AGCT	7 cut(s)	61, 178, 374, 385, 392, 426, 869
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	800
AlwI	GGATC	1 cut(s)	1217
Ama87I	CYCGRG	1 cut(s)	1146
AoxI	GGCC	3 cut(s)	474, 634, 1040
ApeKI	GCWGC	5 cut(s)	178, 371, 649, 968, 1371
AseI	ATTAAT	1 cut(s)	1206
Asp718I	GGTACC	1 cut(s)	247
AspLEI	GCGC	2 cut(s)	316, 503
AspS9I	GGNCC	4 cut(s)	127, 234, 404, 475
AsuC2I	CCSGG	2 cut(s)	34, 755
AsuHPI	GGTGA	4 cut(s)	82, 308, 611, 768
AvaI	CYCGRG	1 cut(s)	1146
AvaII	GGWCC	3 cut(s)	127, 234, 404
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BanI	GGYRCC	2 cut(s)	247, 659
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	5 cut(s)	165, 383, 661, 955, 1358
BccI	CCATC	4 cut(s)	515, 590, 812, 1292
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	1 cut(s)	1085
BciVI	GTATCC	2 cut(s)	48, 1206
BcnI	CCSGG	2 cut(s)	34, 755
BcoDI	GTCTC	1 cut(s)	800
BfmI	CTRYAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	504
BfuAI	ACCTGC	2 cut(s)	1033, 1177
BfuI	GTATCC	2 cut(s)	48, 1206
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	6 cut(s)	179, 334, 372, 650, 969, 1372
BlsI	GCNGC	6 cut(s)	180, 335, 373, 651, 970, 1373
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	3 cut(s)	34, 755, 1085
Bme18I	GGWCC	3 cut(s)	127, 234, 404
BmeT110I	CYCGRG	1 cut(s)	1146
BmgT120I	GGNCC	4 cut(s)	127, 234, 404, 475
BmiI	GGNNCC	5 cut(s)	6, 128, 249, 661, 752
BmrFI	CCNGG	3 cut(s)	34, 755, 1085
BmsI	GCATC	2 cut(s)	15, 1076
BplI	GAGNNNNNCTC	3 cut(s)	28, 371, 403
BpmI	CTGGAG	2 cut(s)	64, 519
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	34, 755
Bsa29I	ATCGAT	2 cut(s)	905, 1221
BsaBI	GATNNNNATC	1 cut(s)	1217
BsaJI	CCNNGG	3 cut(s)	109, 195, 1132
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 510, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 484
Bse1I	ACTGG	4 cut(s)	486, 814, 862, 1336
Bse3DI	GCAATG	1 cut(s)	1127
Bse8I	GATNNNNATC	1 cut(s)	1217
BseBI	CCWGG	1 cut(s)	1085
BseCI	ATCGAT	2 cut(s)	905, 1221
BseDI	CCNNGG	3 cut(s)	109, 195, 1132
BseJI	GATNNNNATC	1 cut(s)	1217
BseLI	CCNNNNNNNGG	2 cut(s)	115, 484
BseMI	GCAATG	1 cut(s)	1127
BseMII	CTCAG	2 cut(s)	145, 402
BseNI	ACTGG	4 cut(s)	486, 814, 862, 1336
BseRI	GAGGAG	5 cut(s)	42, 132, 395, 596, 596
BseXI	GCAGC	5 cut(s)	165, 383, 661, 955, 1358
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	476, 636, 1042
BshNI	GGYRCC	2 cut(s)	247, 659
BshVI	ATCGAT	2 cut(s)	905, 1221
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	1146
BsiSI	CCGG	3 cut(s)	8, 34, 755
BslFI	GGGAC	3 cut(s)	140, 319, 415
BslI	CCNNNNNNNGG	2 cut(s)	115, 484
BsmAI	GTCTC	1 cut(s)	800
BsmFI	GGGAC	3 cut(s)	140, 319, 415
BsnI	GGCC	3 cut(s)	476, 636, 1042
BsoBI	CYCGRG	1 cut(s)	1146
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	880, 1222
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	3 cut(s)	476, 636, 1042
BspCNI	CTCAG	2 cut(s)	144, 401
BspDI	ATCGAT	2 cut(s)	905, 1221
BspLI	GGNNCC	5 cut(s)	6, 128, 249, 661, 752
BspMAI	CTGCAG	1 cut(s)	651
BspMI	ACCTGC	2 cut(s)	1033, 1177
BspPI	GGATC	1 cut(s)	1217
BspT107I	GGYRCC	2 cut(s)	247, 659
BsrDI	GCAATG	1 cut(s)	1127
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	4 cut(s)	486, 814, 862, 1336
BssECI	CCNNGG	3 cut(s)	109, 195, 1132
BssMI	GATC	2 cut(s)	880, 1222
BssT1I	CCWWGG	2 cut(s)	109, 1132
Bst2UI	CCWGG	1 cut(s)	1085
Bst4CI	ACNGT	2 cut(s)	404, 1007
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	4 cut(s)	369, 505, 615, 1292
BstDEI	CTNAG	2 cut(s)	131, 388
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	2 cut(s)	316, 503
BstKTI	GATC	2 cut(s)	883, 1225
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	2 cut(s)	880, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 875, 1064
BstNI	CCWGG	1 cut(s)	1085
BstSCI	CCNGG	3 cut(s)	32, 753, 1083
BstSFI	CTRYAG	1 cut(s)	647
BstV1I	GCAGC	5 cut(s)	165, 383, 661, 955, 1358
BstX2I	RGATCY	1 cut(s)	880
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	880
Bsu15I	ATCGAT	2 cut(s)	905, 1221
BsuI	GTATCC	2 cut(s)	48, 1206
BsuRI	GGCC	3 cut(s)	476, 636, 1042
BsuTUI	ATCGAT	2 cut(s)	905, 1221
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	2 cut(s)	894, 1329
BveI	ACCTGC	2 cut(s)	1033, 1177
Cac8I	GCNNGC	4 cut(s)	369, 505, 615, 1292
CfoI	GCGC	2 cut(s)	316, 503
Cfr13I	GGNCC	4 cut(s)	127, 234, 404, 475
ClaI	ATCGAT	2 cut(s)	905, 1221
Csp6I	GTAC	7 cut(s)	135, 248, 262, 527, 733, 861, 950
CviAII	CATG	6 cut(s)	66, 338, 508, 958, 1127, 1295
CviQI	GTAC	7 cut(s)	135, 248, 262, 527, 733, 861, 950
DdeI	CTNAG	2 cut(s)	131, 388
DpnI	GATC	2 cut(s)	882, 1224
DpnII	GATC	2 cut(s)	880, 1222
DraI	TTTAAA	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	109, 1132
Eco24I	GRGCYC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	3 cut(s)	127, 234, 404
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	885
Eco88I	CYCGRG	1 cut(s)	1146
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	1083
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	109, 1132
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	109, 1132
FaeI	CATG	6 cut(s)	69, 341, 511, 961, 1130, 1298
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	3 cut(s)	140, 319, 415
FatI	CATG	6 cut(s)	65, 337, 507, 957, 1126, 1294
FblI	GTMKAC	1 cut(s)	1191
Fnu4HI	GCNGC	6 cut(s)	179, 334, 372, 650, 969, 1372
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	6 cut(s)	179, 334, 372, 650, 969, 1372
GlaI	GCGC	2 cut(s)	315, 502
GluI	GCNGC	6 cut(s)	179, 334, 372, 650, 969, 1372
GsuI	CTGGAG	2 cut(s)	64, 519
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	476, 636, 1042
HapII	CCGG	3 cut(s)	8, 34, 755
HhaI	GCGC	2 cut(s)	316, 503
Hin1II	CATG	6 cut(s)	69, 341, 511, 961, 1130, 1298
Hin6I	GCGC	2 cut(s)	314, 501
HinP1I	GCGC	2 cut(s)	314, 501
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	3 cut(s)	11, 73, 1016
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	3 cut(s)	8, 34, 755
HphI	GGTGA	4 cut(s)	82, 308, 611, 768
Hpy166II	GTNNAC	6 cut(s)	353, 527, 591, 602, 1162, 1192
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	7 cut(s)	81, 232, 850, 989, 1199, 1254, 1313
Hpy8I	GTNNAC	6 cut(s)	353, 527, 591, 602, 1162, 1192
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	39, 293, 417
HpyCH4III	ACNGT	2 cut(s)	404, 1007
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 875, 1064
HpyF3I	CTNAG	2 cut(s)	131, 388
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	6 cut(s)	69, 341, 511, 961, 1130, 1298
HspAI	GCGC	2 cut(s)	314, 501
KpnI	GGTACC	1 cut(s)	251
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	880, 1222
LmnI	GCTCC	3 cut(s)	4, 382, 1033
Lsp1109I	GCAGC	5 cut(s)	165, 383, 661, 955, 1358
LweI	GCATC	2 cut(s)	15, 1076
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	3 cut(s)	465, 567, 574
MalI	GATC	2 cut(s)	882, 1224
MboI	GATC	2 cut(s)	880, 1222
MboII	GAAGA	2 cut(s)	220, 836
MfeI	CAATTG	1 cut(s)	1071
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	6 cut(s)	18, 540, 1071, 1203, 1207, 1267
MlyI	GAGTC	2 cut(s)	5, 1010
MmeI	TCCRAC	2 cut(s)	803, 1057
MseI	TTAA	5 cut(s)	224, 437, 590, 1206, 1266
MslI	CAYNNNNRTG	2 cut(s)	242, 1179
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	8, 34, 755
MspR9I	CCNGG	3 cut(s)	34, 755, 1085
MunI	CAATTG	1 cut(s)	1071
MvaI	CCWGG	1 cut(s)	1085
MwoI	GCNNNNNNNGC	3 cut(s)	322, 875, 1064
NciI	CCSGG	2 cut(s)	34, 755
NdeII	GATC	2 cut(s)	880, 1222
NlaIII	CATG	6 cut(s)	69, 341, 511, 961, 1130, 1298
NlaIV	GGNNCC	5 cut(s)	6, 128, 249, 661, 752
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	6 cut(s)	180, 335, 373, 651, 970, 1373
PleI	GAGTC	2 cut(s)	5, 1010
PpsI	GAGTC	2 cut(s)	5, 1010
PpuMI	RGGWCCY	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	1206
PsiI	TTATAA	1 cut(s)	1094
Psp124BI	GAGCTC	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	1083
PspGI	CCWGG	1 cut(s)	1083
PspN4I	GGNNCC	5 cut(s)	6, 128, 249, 661, 752
PspPI	GGNCC	4 cut(s)	127, 234, 404, 475
PspPPI	RGGWCCY	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	651
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	7 cut(s)	136, 249, 263, 528, 734, 862, 951
RsaNI	GTAC	7 cut(s)	135, 248, 262, 527, 733, 861, 950
RseI	CAYNNNNRTG	2 cut(s)	242, 1179
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	5 cut(s)	224, 437, 590, 1206, 1266
SatI	GCNGC	6 cut(s)	179, 334, 372, 650, 969, 1372
Sau3AI	GATC	2 cut(s)	880, 1222
Sau96I	GGNCC	4 cut(s)	127, 234, 404, 475
ScaI	AGTACT	1 cut(s)	136
SchI	GAGTC	2 cut(s)	5, 1010
ScrFI	CCNGG	3 cut(s)	34, 755, 1085
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	2 cut(s)	15, 1076
SfcI	CTRYAG	1 cut(s)	647
SinI	GGWCC	3 cut(s)	127, 234, 404
SmiMI	CAYNNNNRTG	2 cut(s)	242, 1179
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	6 cut(s)	18, 540, 1071, 1203, 1207, 1267
SsiI	CCGC	1 cut(s)	334
SspI	AATATT	1 cut(s)	717
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	3 cut(s)	32, 753, 1083
StyI	CCWWGG	2 cut(s)	109, 1132
TaaI	ACNGT	2 cut(s)	404, 1007
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	4 cut(s)	23, 851, 905, 1221
TasI	AATT	6 cut(s)	18, 540, 1071, 1203, 1207, 1267
TatI	WGTACW	4 cut(s)	134, 526, 732, 949
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	5 cut(s)	224, 437, 590, 1206, 1266
Tru9I	TTAA	5 cut(s)	224, 437, 590, 1206, 1266
TscAI	CASTG	2 cut(s)	901, 1336
TseI	GCWGC	5 cut(s)	178, 371, 649, 968, 1371
TspDTI	ATGAA	3 cut(s)	54, 399, 1388
TspGWI	ACGGA	4 cut(s)	484, 712, 791, 1297
TspRI	CASTG	2 cut(s)	901, 1336
VpaK11BI	GGWCC	3 cut(s)	127, 234, 404
VspI	ATTAAT	1 cut(s)	1206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1206
XmiI	GTMKAC	1 cut(s)	1191
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.