Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216090.1

Orthogroup ID

OG0021273

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 494

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 247 bp

atgtacatcgtgacatattttcagagaaatggaaaagctgcttgggtttcccttgggggagcagttctctgcatcaccgggactgaagccatgtttgctgatctgggtcacttcagtgttcaagcaatccaaatcagtttcacttgtttcacatttcccacaatagtcatcgcttatcttgggcaatcggcatacctcgccaagcacccaggagatgtggcaaccactttctacgcctcaataccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

82

Amino Acids

8.86

Weight (kDa)

6.69

Isoelectric Point (pI)

22.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0021273)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g00120
rosa_multiflora	Rmu_co8216090.1_g000001 Rmu_co8308685.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370170
rosa_samantha	Rh3AG319900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	97, 105
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	79
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	79, 210
BmrFI	CCNGG	2 cut(s)	79, 210
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	52, 208
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	52, 208
BseXI	GCAGC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	2 cut(s)	52, 208
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	210
BstAUI	TGTACA	1 cut(s)	3
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 197
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	77, 208
BstV1I	GCAGC	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	2 cut(s)	38, 89
CviKI_1	RGCY	2 cut(s)	38, 89
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	97, 105
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	16, 92, 193
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	94
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 197
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	4 cut(s)	89, 91, 195, 222
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	10, 107
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	206, 247
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	79, 210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	95, 197
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	10, 107
OliI	CACNNNNGTG	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	114
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	79, 210
SetI	ASST	2 cut(s)	40, 198
SfaNI	GCATC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	77, 208
StyI	CCWWGG	1 cut(s)	52
TatI	WGTACW	1 cut(s)	3
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	10, 107
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	2 cut(s)	10, 107
TspRI	CASTG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.