Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308685.1

Orthogroup ID

OG0021273

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 837

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 265 bp

atgtttgcagatcttggtcatttcactgccttatcgataagaattgcatttgcattctttgtgtatccttgtttggtagtacaatacatgggtcaagctgcttttctgtctaaacatcccgactccattcgttacagtttctatgactcaatacctgatccagcattttggcccatctttgttgttgccacacttgcatctattgttgggagccaggctgttataactgcaactttctccatcatcaagcaatgtcatgcccttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071804 GO:0071805 GO:0071840 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

88

Amino Acids

9.75

Weight (kDa)

6.8

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021273)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g00120
rosa_multiflora	Rmu_co8216090.1_g000001 Rmu_co8308685.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370170
rosa_samantha	Rh3AG319900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AclWI	GGATC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	182, 248
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	35
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	10, 157
BspANI	GGCC	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	257
BssMI	GATC	2 cut(s)	10, 157
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	13, 160
BstMBI	GATC	2 cut(s)	10, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	10
BstXI	CCANNNNNNTGG	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	2 cut(s)	88, 257
CviJI	RGCY	4 cut(s)	98, 172, 213, 218
CviKI_1	RGCY	4 cut(s)	98, 172, 213, 218
CviQI	GTAC	1 cut(s)	80
DpnI	GATC	2 cut(s)	12, 159
DpnII	GATC	2 cut(s)	10, 157
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	91, 260
FaiI	YATR	4 cut(s)	89, 144, 224, 258
FatI	CATG	2 cut(s)	87, 256
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	91, 260
HinfI	GANTC	2 cut(s)	122, 146
Hpy188III	TCNNGA	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	8, 47, 53, 197, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	91, 260
Kzo9I	GATC	2 cut(s)	10, 157
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	4 cut(s)	168, 174, 200, 227
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	2 cut(s)	12, 159
MboI	GATC	2 cut(s)	10, 157
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	116, 140
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	10, 157
NlaIII	CATG	2 cut(s)	91, 260
NlaIV	GGNNCC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	2 cut(s)	116, 140
PpsI	GAGTC	2 cut(s)	116, 140
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	10, 157
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	116, 140
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	2 cut(s)	100, 157
SfaNI	GCATC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	79
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.