Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0021273

Physical Location & Seq

Genomic Coordinates Reverse (-)

51840029 .. 51840941

Gene Structure 913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTTGCTGATCTGGGTCACTTCAATGTCAAAGCAGTCCAAATCAGTTTCTCTTGCATTACATTTCCTGCGTTAATCACTGCATATAGTGGCCAAGCAGCATACCTCCGTAAGTTTCCGCTCGAGGTGGAGAAGACGTTCTACAACTCGATCCCAGGTGATGACTCAATCGATCACTTTCCTTTAAACAAAATTGCGGAAATTTTACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

70

Amino Acids

7.88

Weight (kDa)

6.01

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	1 - 67	1.2e-14	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021273)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g00120
rosa_multiflora	Rmu_co8216090.1_g000001 Rmu_co8308685.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370170
rosa_samantha	Rh3AG319900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	2 cut(s)	119, 197
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	154
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AlwI	GGATC	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	122
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	10, 150, 172
BspACI	CCGC	2 cut(s)	119, 197
BspANI	GGCC	1 cut(s)	93
BspDI	ATCGAT	1 cut(s)	171
BspPI	GGATC	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	10, 150, 172
Bst2UI	CCWGG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	13, 153, 175
BstMBI	GATC	3 cut(s)	10, 150, 172
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
ClaI	ATCGAT	1 cut(s)	171
CviJI	RGCY	1 cut(s)	93
CviKI_1	RGCY	1 cut(s)	93
DpnI	GATC	3 cut(s)	12, 152, 174
DpnII	GATC	3 cut(s)	10, 150, 172
DraI	TTTAAA	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	154
FaiI	YATR	3 cut(s)	85, 87, 103
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	57, 83
HpySE526I	ACGT	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	10, 150, 172
LpnPI	CCDG	3 cut(s)	81, 141, 168
Lsp1109I	GCAGC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	12, 152, 174
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	3 cut(s)	10, 150, 172
MboII	GAAGA	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	2 cut(s)	192, 201
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	116, 118
Mox20I	TGGCCA	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	2 cut(s)	74, 185
MslI	CAYNNNNRTG	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	10, 150, 172
NmuCI	GTSAC	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	74, 185
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	10, 150, 172
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	4 cut(s)	108, 129, 140, 160
Sfr274I	CTCGAG	1 cut(s)	122
SgeI	CNNG	9 cut(s)	26, 66, 80, 107, 134, 136, 160, 167, 168
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	192, 201
SsiI	CCGC	2 cut(s)	119, 197
StyD4I	CCNGG	1 cut(s)	154
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	123, 149, 171
TasI	AATT	2 cut(s)	192, 201
Tru1I	TTAA	2 cut(s)	74, 185
Tru9I	TTAA	2 cut(s)	74, 185
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.