Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0021273

Physical Location & Seq

Genomic Coordinates Reverse (-)

44336822 .. 44338553

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG319900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTTGTTGATCTAGGACATTTCTCTGTACGAGCCATACAGATTGCCTTCTCTTTTGTGGTGTTCCCATGCCTCCTTTTTGCTTACATGGGTCCAGCTGCTTATCTTATGAAATACCCTGATTCTTCTCATAGAATATTCTATGATTCTGTACCAGATAGTCTTTTTTGGCCAGTCATTGTGATAGCCACACTTGCAGCGATGATTGCCAGCCAAGCAATGATATCTGCTACATTTTCATGTGTCAAGCAATCTATGGCTCTTGGATGCTTTCACCTTGGGAAGCCTCCTGACTGGCAAGATTTTGTGGTTATTATTACTCTGCTGGTCATCAACTCCACCATTAGTTTCATCAAGGAAAATAATGCGGAATCTAATCCCCAAAAGAGGGATGAATATTTACACAGATTGATGAGTCTCCCAAATCAGAAATGGTCCGAGATTATTGGGCAAGCACGCCAAAGTGTCGAAGTTCTTAAAGATCAGGAAGTGATTCGAACCGTTCTTAATATATTACAGTTGGTCCTATTTTGGATATCAGTTGTAATTATTCTTTGGTTTGCAGACAAACACAAGGGTTGCCAGCTCTCTTGGAACATTTCTCTTAACCCAGATTTCATTGATCTTTTTCAACATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

213

Amino Acids

24.3

Weight (kDa)

6.28

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	1 - 91	7.8e-31	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021273)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g00120
rosa_multiflora	Rmu_co8216090.1_g000001 Rmu_co8308685.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370170
rosa_samantha	Rh3AG319900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	170
AfaI	GTAC	2 cut(s)	30, 153
AfiI	CCNNNNNNNGG	2 cut(s)	387, 388
AgsI	TTSAA	1 cut(s)	632
AluBI	AGCT	2 cut(s)	98, 586
AluI	AGCT	2 cut(s)	98, 586
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	98, 197
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	3 cut(s)	92, 435, 523
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	496
AvaII	GGWCC	3 cut(s)	92, 435, 523
BalI	TGGCCA	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	85, 209
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	99, 198
BlsI	GCNGC	2 cut(s)	100, 199
Bme18I	GGWCC	3 cut(s)	92, 435, 523
BmgT120I	GGNCC	3 cut(s)	92, 435, 523
BmiI	GGNNCC	1 cut(s)	93
BmsI	GCATC	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 388
Bse1I	ACTGG	2 cut(s)	173, 299
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	272, 397
BseLI	CCNNNNNNNGG	2 cut(s)	387, 388
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	173, 299
BseXI	GCAGC	2 cut(s)	85, 209
BshFI	GGCC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	387, 388
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	10, 481, 622
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	173, 299
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	10, 481, 622
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	502, 519
BstBI	TTCGAA	1 cut(s)	496
BstC8I	GCNNGC	4 cut(s)	211, 453, 457, 584
BstF5I	GGATG	2 cut(s)	272, 397
BstKTI	GATC	3 cut(s)	13, 484, 625
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	10, 481, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 206, 215
BstNSI	RCATGY	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	85, 209
BsuRI	GGCC	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	272, 397
Cac8I	GCNNGC	4 cut(s)	211, 453, 457, 584
Cfr13I	GGNCC	3 cut(s)	92, 435, 523
Csp6I	GTAC	2 cut(s)	29, 152
CviAII	CATG	4 cut(s)	69, 88, 240, 635
CviJI	RGCY	8 cut(s)	35, 98, 172, 188, 213, 260, 286, 586
CviKI_1	RGCY	8 cut(s)	35, 98, 172, 188, 213, 260, 286, 586
CviQI	GTAC	2 cut(s)	29, 152
DpnI	GATC	3 cut(s)	12, 483, 624
DpnII	GATC	3 cut(s)	10, 481, 622
EaeI	YGGCCR	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	277
Eco32I	GATATC	2 cut(s)	225, 537
Eco47I	GGWCC	3 cut(s)	92, 435, 523
EcoRV	GATATC	2 cut(s)	225, 537
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	4 cut(s)	72, 91, 243, 638
FatI	CATG	4 cut(s)	68, 87, 239, 634
Fnu4HI	GCNGC	2 cut(s)	99, 198
FokI	GGATG	2 cut(s)	279, 404
Fsp4HI	GCNGC	2 cut(s)	99, 198
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	2 cut(s)	99, 198
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	4 cut(s)	72, 91, 243, 638
HinfI	GANTC	5 cut(s)	122, 146, 371, 415, 493
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	429, 439
Hpy188III	TCNNGA	2 cut(s)	290, 485
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	502, 519
HpyCH4V	TGCA	2 cut(s)	197, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 206, 215
Hsp92II	CATG	4 cut(s)	72, 91, 243, 638
Kzo9I	GATC	3 cut(s)	10, 481, 622
Lsp1109I	GCAGC	2 cut(s)	85, 209
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	14
MalI	GATC	3 cut(s)	12, 483, 624
MboI	GATC	3 cut(s)	10, 481, 622
MboII	GAAGA	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	1 cut(s)	546
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	3 cut(s)	83, 297, 381
Mox20I	TGGCCA	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	4 cut(s)	477, 507, 606, 640
MslI	CAYNNNNRTG	1 cut(s)	238
Msp20I	TGGCCA	1 cut(s)	172
MspA1I	CMGCKG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	194, 206, 215
NdeII	GATC	3 cut(s)	10, 481, 622
NlaIII	CATG	4 cut(s)	72, 91, 243, 638
NlaIV	GGNNCC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	638
NspV	TTCGAA	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	4 cut(s)	122, 146, 371, 493
PkrI	GCNGC	2 cut(s)	100, 199
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	3 cut(s)	92, 435, 523
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	30, 153
RsaNI	GTAC	2 cut(s)	29, 152
RseI	CAYNNNNRTG	1 cut(s)	238
SaqAI	TTAA	4 cut(s)	477, 507, 606, 640
SatI	GCNGC	2 cut(s)	99, 198
Sau3AI	GATC	3 cut(s)	10, 481, 622
Sau96I	GGNCC	3 cut(s)	92, 435, 523
SchI	GAGTC	1 cut(s)	424
SetI	ASST	3 cut(s)	100, 279, 588
SfaNI	GCATC	1 cut(s)	257
SfuI	TTCGAA	1 cut(s)	496
SinI	GGWCC	3 cut(s)	92, 435, 523
SmiMI	CAYNNNNRTG	1 cut(s)	238
Sse9I	AATT	1 cut(s)	546
SsiI	CCGC	1 cut(s)	368
SspI	AATATT	2 cut(s)	138, 398
SspMI	CTAG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	502, 519
TaqI	TCGA	2 cut(s)	468, 496
TasI	AATT	1 cut(s)	546
TfiI	GAWTC	4 cut(s)	122, 146, 371, 493
Tru1I	TTAA	4 cut(s)	477, 507, 606, 640
Tru9I	TTAA	4 cut(s)	477, 507, 606, 640
TseI	GCWGC	2 cut(s)	98, 197
TspDTI	ATGAA	5 cut(s)	125, 228, 340, 408, 607
VpaK11BI	GGWCC	3 cut(s)	92, 435, 523
XceI	RCATGY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.