pycom11g01060

Ribulose bisphosphate carboxylase oxygenase activase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0019789
Physical Location & Seq
Reverse (-)
840993 .. 841254
262 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGTCCGATATAACACTTCAGGCCCCATGCCGGCTCCCCGTCTCTGAGCAGACAACAGTCAGAGGAAAACACACTTCAGGCCCTATGCTAATACCAAACCGTCGCCCAGGACGGACCGGATCTATCCCTACGTCCCGTAGCGGAAAGGACCACTACGTAAGTACAAAACCAGTGAACATACATATATTGAAAATCAACTTCATAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.61

Weight (kDa)

10.96

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019789)

Species Orthologous Gene IDs
malus_domestica MD11G1202400.v1.1
pyrus_communis pycom01g11970 pycom01g12130 pycom01g12400 pycom01g12410 pycom02g18500 pycom11g01060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 127
AoxI GGCC 2 cut(s) 21, 79
AspS9I GGNCC 4 cut(s) 22, 80, 114, 148
AvaII GGWCC 2 cut(s) 114, 148
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 2 cut(s) 114, 148
BmgT120I GGNCC 4 cut(s) 22, 80, 114, 148
BmiI GGNNCC 2 cut(s) 24, 35
BmrFI CCNGG 1 cut(s) 108
BoxI GACNNNNGTC 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 170
BshFI GGCC 2 cut(s) 23, 81
BsiSI CCGG 2 cut(s) 31, 117
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 2 cut(s) 23, 81
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 141
BspANI GGCC 2 cut(s) 23, 81
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 24, 35
BspPI GGATC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 58, 101
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 45
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 108
BstPAI GACNNNNGTC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 106
BstSNI TACGTA 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 2 cut(s) 23, 81
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 4 cut(s) 22, 80, 114, 148
CpoI CGGWCCG 1 cut(s) 114
Csp6I GTAC 1 cut(s) 162
CspI CGGWCCG 1 cut(s) 114
CviAII CATG 1 cut(s) 27
CviJI RGCY 3 cut(s) 23, 34, 81
CviKI_1 RGCY 3 cut(s) 23, 34, 81
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco105I TACGTA 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 114, 148
Eco57I CTGAAG 1 cut(s) 60
EcoO109I RGGNCCY 2 cut(s) 22, 80
EcoRII CCWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 30
FaiI YATR 8 cut(s) 11, 28, 86, 179, 183, 185, 203, 208
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 26
HaeIII GGCC 2 cut(s) 23, 81
HapII CCGG 2 cut(s) 31, 117
Hin1II CATG 1 cut(s) 30
HpaII CCGG 2 cut(s) 31, 117
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 7, 46, 62
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 105
HpyCH4III ACNGT 2 cut(s) 58, 101
HpyCH4IV ACGT 2 cut(s) 131, 156
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 2 cut(s) 131, 156
Hsp92II CATG 1 cut(s) 30
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 7 cut(s) 5, 44, 63, 93, 120, 130, 183
MaeII ACGT 2 cut(s) 131, 156
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MflI RGATCY 1 cut(s) 119
MnlI CCTC 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 30
MspI CCGG 2 cut(s) 31, 117
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
NaeI GCCGGC 1 cut(s) 32
NdeII GATC 1 cut(s) 119
NgoMIV GCCGGC 1 cut(s) 30
NlaIII CATG 1 cut(s) 30
NlaIV GGNNCC 2 cut(s) 24, 35
PdiI GCCGGC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 24, 35
PspPI GGNCC 4 cut(s) 22, 80, 114, 148
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
Rsr2I CGGWCCG 1 cut(s) 114
RsrII CGGWCCG 1 cut(s) 114
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 4 cut(s) 22, 80, 114, 148
ScrFI CCNGG 1 cut(s) 108
SetI ASST 2 cut(s) 134, 159
SinI GGWCC 2 cut(s) 114, 148
SnaBI TACGTA 1 cut(s) 157
SsiI CCGC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 58, 101
TaiI ACGT 2 cut(s) 134, 159
TatI WGTACW 1 cut(s) 161
TscAI CASTG 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 114, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.