pycom11g01480

transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0019787
Physical Location & Seq
Reverse (-)
1272800 .. 1275095
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGGCAAGAGTGGTGGGAAGGAAAGATGAGAGAATTCTGACAAGATTGGCAGATGAATTCGAACAACTGGCCGCTCAACTGAATTCTCCGGTACCGATCGATCCCATGGAAATTGGCAAGTTCACTCAAGCCTGTCGTCTCGTTTCTCCTCTCATTCGACACTTAGGCGTCGCTATGAAGTTCGCGGACATAGAGTACTCTGCTAAGGTTAGCGGGGTTGTAAAGGCAGGAAAGTCAGTCAATACCCTAGAAGAATTGCTTGACCGTGACATACAACAGAATACTATTAAGCTCCAAAGTAGTGGTTCGAGATTACTCATCAGAGTGAAGCGTTCACTTGAGATGCTTAAGATAATATTCGAGCGAAGTATGGCCTCAAGCGGAAATTCTCTCATGGATCCGGTTAACACAGCATATAAACAAGTTTTTTACCCCTACCACGGATGGGCTAGTAGAAAGACTGTTGCGGGTGCACTGCAAACCCTTCCTACAAAGTCATTGTTCATCAAAAGGCTAAAATTAGATGAGGCATCGGCTTTTGTTCAGATGCAGAGGATGGTTACTGCAGTGGCTCCTCTGATACACTACATTGACAACTTATTTCTTTCAAGGGAGTCAGCTAAAGAGATGCTACGCTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

215

Amino Acids

24.1

Weight (kDa)

9.83

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 37 - 173 6e-30 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019787)

Species Orthologous Gene IDs
malus_domestica MD11G1019900.v1.1 MD11G1020300.v1.1 MD11G1020400.v1.1 MD11G1020600.v1.1 MD11G1073600.v1.1
pyrus_communis pycom11g01480 pycom11g01630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 185
AciI CCGC 5 cut(s) 72, 185, 213, 381, 467
AclWI GGATC 3 cut(s) 95, 392, 405
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 4 cut(s) 33, 56, 82, 385
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 2 cut(s) 93, 197
AfiI CCNNNNNNNGG 2 cut(s) 440, 445
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 1 cut(s) 609
AluBI AGCT 2 cut(s) 292, 620
AluI AGCT 2 cut(s) 292, 620
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 471
AlwI GGATC 3 cut(s) 95, 392, 405
AoxI GGCC 2 cut(s) 69, 372
ApaLI GTGCAC 1 cut(s) 471
ApoI RAATTY 4 cut(s) 33, 56, 82, 385
Asp718I GGTACC 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 475
BamHI GGATCC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 475
BccI CCATC 2 cut(s) 438, 550
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 2 cut(s) 248, 450
BfmI CTRYAG 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmcAI AGTACT 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 93, 399, 573
BmsI GCATC 4 cut(s) 333, 537, 539, 618
Bpu10I CCTNAGC 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 3 cut(s) 111, 359, 361
Bsa29I ATCGAT 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 105, 439
BsaWI WCCGGW 2 cut(s) 88, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 445
Bse1I ACTGG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 105, 439
BseGI GGATG 2 cut(s) 449, 561
BseLI CCNNNNNNNGG 2 cut(s) 440, 445
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 138, 564
BseSI GKGCMC 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 71, 374
BshNI GGYRCC 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 2 cut(s) 89, 401
BslI CCNNNNNNNGG 2 cut(s) 440, 445
BsmAI GTCTC 1 cut(s) 143
BsmBI CGTCTC 1 cut(s) 143
BsnI GGCC 2 cut(s) 71, 374
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 3 cut(s) 96, 100, 397
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 5 cut(s) 72, 185, 213, 381, 467
BspANI GGCC 2 cut(s) 71, 374
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 3 cut(s) 93, 399, 573
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 3 cut(s) 95, 392, 405
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 105, 439
BssMI GATC 3 cut(s) 96, 100, 397
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 266, 463
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 347
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 2 cut(s) 163, 204
BstDSI CCRYGG 2 cut(s) 105, 439
BstF5I GGATG 2 cut(s) 449, 561
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 3 cut(s) 99, 103, 400
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 96, 100, 397
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 475
BstUI CGCG 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 2 cut(s) 71, 374
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 105, 439
BtsCI GGATG 2 cut(s) 449, 561
BtsI GCAGTG 2 cut(s) 473, 573
BtsIMutI CAGTG 2 cut(s) 473, 573
Cac8I GCNNGC 1 cut(s) 638
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 92, 196
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 2 cut(s) 106, 394
CviJI RGCY 9 cut(s) 71, 131, 292, 374, 449, 514, 536, 572, 620
CviKI_1 RGCY 9 cut(s) 71, 131, 292, 374, 449, 514, 536, 572, 620
CviQI GTAC 2 cut(s) 92, 196
DdeI CTNAG 2 cut(s) 163, 204
DpnI GATC 3 cut(s) 98, 102, 399
DpnII GATC 3 cut(s) 96, 100, 397
EaeI YGGCCR 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 105
EcoRI GAATTC 3 cut(s) 33, 56, 82
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 2 cut(s) 109, 397
FaiI YATR 8 cut(s) 107, 176, 191, 272, 371, 395, 415, 417
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 2 cut(s) 105, 393
FauI CCCGC 2 cut(s) 206, 460
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 456, 568
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 248, 450
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 71, 374
HapII CCGG 2 cut(s) 89, 401
HgaI GACGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 109, 397
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 614
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 2 cut(s) 89, 401
Hpy166II GTNNAC 4 cut(s) 123, 335, 406, 473
Hpy188I TCNGA 4 cut(s) 39, 323, 546, 579
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 4 cut(s) 123, 335, 406, 473
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 12, 494
HpyCH4III ACNGT 2 cut(s) 266, 463
HpyCH4V TGCA 4 cut(s) 473, 478, 550, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 2 cut(s) 163, 204
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 109, 397
KpnI GGTACC 1 cut(s) 95
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 3 cut(s) 96, 100, 397
LmnI GCTCC 2 cut(s) 297, 577
LpnPI CCDG 5 cut(s) 53, 102, 145, 213, 414
LweI GCATC 4 cut(s) 333, 537, 539, 618
MaeI CTAG 2 cut(s) 248, 450
MaeIII GTNAC 2 cut(s) 266, 559
MalI GATC 3 cut(s) 98, 102, 399
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 96, 100, 397
MboII GAAGA 1 cut(s) 263
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 7 cut(s) 33, 56, 82, 111, 254, 385, 518
MlyI GAGTC 1 cut(s) 623
MnlI CCTC 5 cut(s) 159, 385, 520, 546, 585
MseI TTAA 3 cut(s) 288, 348, 405
MslI CAYNNNNRTG 1 cut(s) 323
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 2 cut(s) 89, 401
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 637
NcoI CCATGG 1 cut(s) 105
NdeII GATC 3 cut(s) 96, 100, 397
NlaIII CATG 2 cut(s) 109, 397
NlaIV GGNNCC 3 cut(s) 93, 399, 573
NmuCI GTSAC 1 cut(s) 266
NspV TTCGAA 1 cut(s) 60
PkrI GCNGC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
PspN4I GGNNCC 3 cut(s) 93, 399, 573
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 1 cut(s) 397
PvuI CGATCG 1 cut(s) 99
RsaI GTAC 2 cut(s) 93, 197
RsaNI GTAC 2 cut(s) 92, 196
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 3 cut(s) 288, 348, 405
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 96, 100, 397
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 623
SduI GDGCHC 1 cut(s) 475
SetI ASST 3 cut(s) 210, 294, 622
SfaNI GCATC 4 cut(s) 333, 537, 539, 618
SfcI CTRYAG 1 cut(s) 564
SfuI TTCGAA 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 4 cut(s) 126, 338, 347, 376
SmoI CTYRAG 4 cut(s) 126, 338, 347, 376
Sse9I AATT 7 cut(s) 33, 56, 82, 111, 254, 385, 518
SsiI CCGC 5 cut(s) 72, 185, 213, 381, 467
SspI AATATT 1 cut(s) 357
SspMI CTAG 2 cut(s) 248, 450
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 266, 463
TaqI TCGA 5 cut(s) 60, 99, 157, 308, 360
TasI AATT 7 cut(s) 33, 56, 82, 111, 254, 385, 518
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 288, 348, 405
Tru9I TTAA 3 cut(s) 288, 348, 405
TscAI CASTG 2 cut(s) 480, 573
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 69, 191, 493
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 2 cut(s) 480, 573
Vha464I CTTAAG 1 cut(s) 347
VneI GTGCAC 1 cut(s) 471
XapI RAATTY 4 cut(s) 33, 56, 82, 385
XspI CTAG 2 cut(s) 248, 450
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.