pycom11g01920

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014707
Physical Location & Seq
Reverse (-)
1682899 .. 1684518
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1620 bp
ATGAAAATACCATCTTTTTCGACATTCAAGTTGTCTCCAGACGACTTGGCTTTGCTTTTGCAGAAATGCATGAAAGCAAAGGCTCTGAGACAAGGCAAGCAAATTCATGCGGTGCTGTTAGCCAGTGGGGTGGACATGAATTTGTTATCTTTGAGTTCAAAGCTTGTGGGGATGTATGCTGGTTGTGGGGATGTTGGGTACGCACACCAAACGTTTGATAAAATTCCCAAGCCAAACGTTTTCGCGTTGAACTGGCTGGTTTTGGCGTCGGCGTTTAATGGTCAGTTTGAGGACGCTATTGGGTACTTTTATTTGATGCAAGAGTTGGGAATTGTTGGCAACAAGTTCACGTTTCCTGTCGTGCTTAAAGTTTGTGTTGGTTTGATGGATTTGAACAAGGGAAAGGAAGTTCATGCTGTGGTGAATAAACTTGGTTTTGAAAAGGATGTATCTTTGGCAAATGCCTTGATTGACATGTATTATAAATGCGGAAGTTTGTGTTATGCTCGTCGCGTGTTTGATAGGATGCTCGACAGAGACGTTGTTTCTTGGACGTCGATGATATGCGGGTATTTTAACATAGGAAAGACTGATCAAGCGCTCCTCTTGTTTGAGAGGATGAGGTTGGATGGATTGGAACCGAATGATTTCACATGGAATGCAATGATAGCGGGGTTTGCTCGGTGTGGAGATACAAATCGAGCATATGCACTTCTGTCTAGGATGACTAAAGAAGGATCGGTTCCTGATTTGGTTACTTGGAATGCGTTGATTTCAGGTTTTACCCAAGGCCAACATGCTGATGAAGCATTTAAACTGTTCAGGATGATGTTGGTGTCTGGAATTAAGGTGAACCTCGTGACTATCACAGGGTTGCTACCAGCTTGTGGGATCATTGGTTCAATTCAAAGAGGGAGAGAAATTCATGGATTGATCTACAGGATGGACTTTGACGTAAATGTGTTTGTTGCTAGTGCTCTTATTGATATGTACTCAAAATGTGGCAGTGTGAAAAATGCTCGAAGTGTATTTTACCAGAATCCTGTAAATAACATTGCATCATGGAATGCATTGATTGGATGTTATGGTAAGTACGGTATGGTTGATTCCTCCATAGAGCTTTTTGAAAGAATGCAAGCAGAAGGAGTGCAGTTAAATGAAGTGACTTTGACATGCGTACTTTCTGCGTGCAGCCACAGTGGTTATGTAGAGAAAGGTTTAAAGATTTTCAAGTCCATGAAGGTGTGTCATGGAGTTGAGCCAGGTACAGAACATTATGCTTGTGTTGTTGATCTCTTGTGTCGGTCAGGAAAGATGGTCGCAGCTTACGAATTGGTTAAGGGAATGCCTATAGAAGTCACTGAATCTATCATTGGAGCCTTTTTCAACGGTTGCAAAGTCCATGGAAGAAGAGATCTTGCTAAAATGATGGCTGAAGCTATTCTAAAAATGGAGTTAAAGAGACCTGGAGGTTTTGTAACACTTTCGAATATCTATGCTGCTGACGGAGAATGGGAAGAGGTTGAGAAGGTAAGGATGGTGATGAAGCAGAGGAAGATTCTCAAGCAACGTGGATTTAGTTGGCTCGATAAAGGGATGGCTTTGTCAGACTTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

540

Amino Acids

59.85

Weight (kDa)

8.7

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 179 - 228 1.7e-13 PPR repeat family
PPR_3 PF13812 180 - 223 7.3e-06 Pentatricopeptide repeat domain
PPR PF01535 182 - 212 2.9e-06 PPR repeat
PPR_long PF17177 198 - 304 2e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 210 - 243 3.7e-08 PPR repeat
PPR_3 PF13812 210 - 260 2.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 214 - 261 1.5e-11 PPR repeat family
PPR PF01535 217 - 246 3.3e-06 PPR repeat
PPR_1 PF12854 246 - 277 3.7e-07 PPR repeat
PPR_2 PF13041 249 - 296 2.7e-10 PPR repeat family
PPR PF01535 252 - 282 2.7e-06 PPR repeat
PPR_2 PF13041 351 - 398 4e-10 PPR repeat family
PPR PF01535 354 - 383 3.1e-07 PPR repeat
PPR_long PF17177 367 - 465 3.3e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 472 - 529 1e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014707)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43470
malus_domestica MD11G1024300.v1.1
prunus_persica Prupe.6G020300_v2.0.a1
pyrus_communis pycom11g01920
rosa_chinensis RchiOBHm_Chr5g0077881
rosa_laevigata RLG00000036722
rosa_multiflora Rmu_co8015760.1_g000001 Rmu_sc0031428.1_g000002 Rmu_ssc0000186.1_g000002
rosa_roxburghii Rroxscaffold_1G00004300
rosa_rugosa Rorug05G0456900 Rorug05G0456900
rosa_samantha Rh5AG511300 Rh5BG534000 Rh5CG557500 Rh5DG545500
rosa_wichuraiana Rw5G047450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AatII GACGTC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 887
AccII CGCG 2 cut(s) 245, 513
AciI CCGC 4 cut(s) 110, 489, 567, 671
AclI AACGTT 2 cut(s) 212, 237
AclWI GGATC 2 cut(s) 745, 899
AcsI RAATTY 4 cut(s) 102, 139, 222, 921
AcuI CTGAAG 1 cut(s) 1455
AcyI GRCGYC 2 cut(s) 266, 554
AfaI GTAC 6 cut(s) 200, 305, 992, 1094, 1179, 1267
AfeI AGCGCT 1 cut(s) 600
AfiI CCNNNNNNNGG 1 cut(s) 887
AflIII ACRYGT 1 cut(s) 474
AjnI CCWGG 2 cut(s) 1261, 1465
AjuI GAANNNNNNNTTGG 2 cut(s) 1356, 1388
AloI GAACNNNNNNTCC 4 cut(s) 393, 425, 883, 915
AluBI AGCT 5 cut(s) 163, 884, 1120, 1325, 1439
AluI AGCT 5 cut(s) 163, 884, 1120, 1325, 1439
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 4 cut(s) 39, 82, 531, 1456
AlwI GGATC 2 cut(s) 745, 899
Aor51HI AGCGCT 1 cut(s) 600
AoxI GGCC 1 cut(s) 790
ApeKI GCWGC 3 cut(s) 1191, 1322, 1499
ApoI RAATTY 4 cut(s) 102, 139, 222, 921
Asp700I GAANNNNTTC 2 cut(s) 647, 1440
AspLEI GCGC 1 cut(s) 601
AsuHPI GGTGA 3 cut(s) 433, 862, 1552
AsuII TTCGAA 1 cut(s) 1487
BauI CACGAG 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 3 cut(s) 1203, 1334, 1486
BccI CCATC 8 cut(s) 19, 379, 623, 937, 1309, 1423, 1531, 1591
BciT130I CCWGG 2 cut(s) 1263, 1467
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 4 cut(s) 39, 82, 531, 1456
BfaI CTAG 2 cut(s) 720, 972
BfmI CTRYAG 2 cut(s) 937, 1350
BfoI RGCGCY 1 cut(s) 602
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 3 cut(s) 1192, 1323, 1500
BlsI GCNGC 3 cut(s) 1193, 1324, 1501
Bme1390I CCNGG 2 cut(s) 1263, 1467
BmiI GGNNCC 3 cut(s) 639, 744, 1378
BmrFI CCNGG 2 cut(s) 1263, 1467
BmsI GCATC 3 cut(s) 306, 516, 1067
BpmI CTGGAG 2 cut(s) 21, 1488
Bpu14I TTCGAA 1 cut(s) 1487
BpuEI CTTGAG 1 cut(s) 1547
BsaBI GATNNNNATC 1 cut(s) 696
BsaHI GRCGYC 2 cut(s) 266, 554
BsaI GGTCTC 1 cut(s) 1456
BsaJI CCNNGG 2 cut(s) 787, 1402
BsaXI ACNNNNNCTCC 2 cut(s) 1461, 1491
Bsc4I CCNNNNNNNGG 1 cut(s) 887
Bse1I ACTGG 2 cut(s) 123, 257
Bse3DI GCAATG 2 cut(s) 669, 1053
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 2 cut(s) 1263, 1467
BseDI CCNNGG 2 cut(s) 787, 1402
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 1 cut(s) 887
BseMI GCAATG 2 cut(s) 669, 1053
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 2 cut(s) 123, 257
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 3 cut(s) 1203, 1334, 1486
BsgI GTGCAG 2 cut(s) 1169, 1210
Bsh1236I CGCG 2 cut(s) 245, 513
BshFI GGCC 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 979
BslI CCNNNNNNNGG 1 cut(s) 887
BsmAI GTCTC 4 cut(s) 39, 82, 531, 1456
BsmBI CGTCTC 1 cut(s) 531
BsmI GAATGC 5 cut(s) 664, 769, 1072, 1137, 1350
BsnI GGCC 1 cut(s) 792
Bso31I GGTCTC 1 cut(s) 1456
Bsp119I TTCGAA 1 cut(s) 1487
Bsp1286I GDGCHC 1 cut(s) 979
Bsp143I GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
Bsp19I CCATGG 1 cut(s) 1402
BspACI CCGC 4 cut(s) 110, 489, 567, 671
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 2 cut(s) 245, 513
BspLI GGNNCC 3 cut(s) 639, 744, 1378
BspPI GGATC 2 cut(s) 745, 899
BspT104I TTCGAA 1 cut(s) 1487
BspTNI GGTCTC 1 cut(s) 1456
BsrDI GCAATG 2 cut(s) 669, 1053
BsrI ACTGG 2 cut(s) 123, 257
BssECI CCNNGG 2 cut(s) 787, 1402
BssMI GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
BssNI GRCGYC 2 cut(s) 266, 554
BssSI CACGAG 1 cut(s) 857
BssT1I CCWWGG 2 cut(s) 787, 1402
Bst2BI CACGAG 1 cut(s) 857
Bst2UI CCWGG 2 cut(s) 1263, 1467
Bst4CI ACNGT 4 cut(s) 819, 1097, 1199, 1391
Bst6I CTCTTC 2 cut(s) 1405, 1512
BstACI GRCGYC 2 cut(s) 266, 554
BstBI TTCGAA 1 cut(s) 1487
BstC8I GCNNGC 3 cut(s) 98, 1137, 1189
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 1402
BstFNI CGCG 2 cut(s) 245, 513
BstH2I RGCGCY 1 cut(s) 602
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 6 cut(s) 595, 740, 894, 936, 1294, 1417
BstMAI GTCTC 4 cut(s) 39, 82, 531, 1456
BstMBI GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
BstMWI GCNNNNNNNGC 3 cut(s) 668, 677, 806
BstNI CCWGG 2 cut(s) 1263, 1467
BstNSI RCATGY 3 cut(s) 478, 800, 1176
BstSCI CCNGG 2 cut(s) 1261, 1465
BstSFI CTRYAG 2 cut(s) 937, 1350
BstUI CGCG 2 cut(s) 245, 513
BstV1I GCAGC 3 cut(s) 1203, 1334, 1486
BstX2I RGATCY 1 cut(s) 1414
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 1414
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 1402
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 4 cut(s) 130, 1012, 1204, 1359
Cac8I GCNNGC 3 cut(s) 98, 1137, 1189
CfoI GCGC 1 cut(s) 601
CseI GACGC 2 cut(s) 255, 302
Csp6I GTAC 6 cut(s) 199, 304, 991, 1093, 1178, 1266
CspCI CAANNNNNGTGG 4 cut(s) 147, 182, 1552, 1587
CviQI GTAC 6 cut(s) 199, 304, 991, 1093, 1178, 1266
DdeI CTNAG 1 cut(s) 86
DpnI GATC 6 cut(s) 594, 739, 893, 935, 1293, 1416
DpnII GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
DraI TTTAAA 2 cut(s) 814, 1221
Eam1104I CTCTTC 2 cut(s) 1405, 1512
EarI CTCTTC 2 cut(s) 1405, 1512
Eco130I CCWWGG 2 cut(s) 787, 1402
Eco31I GGTCTC 1 cut(s) 1456
Eco47III AGCGCT 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 1455
EcoRII CCWGG 2 cut(s) 1261, 1465
EcoT14I CCWWGG 2 cut(s) 787, 1402
EcoT22I ATGCAT 2 cut(s) 71, 1072
ErhI CCWWGG 2 cut(s) 787, 1402
Esp3I CGTCTC 1 cut(s) 531
FauI CCCGC 2 cut(s) 560, 664
FauNDI CATATG 1 cut(s) 706
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 3 cut(s) 1192, 1323, 1500
Fsp4HI GCNGC 3 cut(s) 1192, 1323, 1500
FspBI CTAG 2 cut(s) 720, 972
GlaI GCGC 1 cut(s) 600
GluI GCNGC 3 cut(s) 1192, 1323, 1500
GsuI CTGGAG 2 cut(s) 21, 1488
HaeII RGCGCY 1 cut(s) 602
HaeIII GGCC 1 cut(s) 792
HgaI GACGC 2 cut(s) 255, 302
HhaI GCGC 1 cut(s) 601
Hin1I GRCGYC 2 cut(s) 266, 554
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 4 cut(s) 1039, 1106, 1364, 1558
HphI GGTGA 3 cut(s) 433, 862, 1552
Hpy166II GTNNAC 3 cut(s) 133, 348, 853
Hpy188I TCNGA 2 cut(s) 87, 1609
Hpy188III TCNNGA 6 cut(s) 38, 746, 823, 840, 859, 1308
Hpy8I GTNNAC 3 cut(s) 133, 348, 853
Hpy99I CGWCG 3 cut(s) 271, 513, 559
HpyAV CCTTC 4 cut(s) 728, 1136, 1234, 1522
HpyCH4III ACNGT 4 cut(s) 819, 1097, 1199, 1391
HpyCH4IV ACGT 7 cut(s) 212, 237, 350, 540, 554, 954, 1570
HpyF10VI GCNNNNNNNGC 3 cut(s) 668, 677, 806
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 7 cut(s) 212, 237, 350, 540, 554, 954, 1570
Hsp92I GRCGYC 2 cut(s) 266, 554
HspAI GCGC 1 cut(s) 599
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
LmnI GCTCC 2 cut(s) 606, 1376
Lsp1109I GCAGC 3 cut(s) 1203, 1334, 1486
LweI GCATC 3 cut(s) 306, 516, 1067
MaeI CTAG 2 cut(s) 720, 972
MaeII ACGT 7 cut(s) 212, 237, 350, 540, 554, 954, 1570
MaeIII GTNAC 5 cut(s) 754, 859, 1162, 1357, 1477
MalI GATC 6 cut(s) 594, 739, 893, 935, 1293, 1416
MboI GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
MboII GAAGA 4 cut(s) 1419, 1422, 1529, 1567
MflI RGATCY 1 cut(s) 1414
MhlI GDGCHC 1 cut(s) 979
MluCI AATT 8 cut(s) 102, 139, 222, 330, 843, 903, 921, 1331
MmeI TCCRAC 1 cut(s) 606
Mph1103I ATGCAT 2 cut(s) 71, 1072
MroXI GAANNNNTTC 2 cut(s) 647, 1440
MseI TTAA 9 cut(s) 276, 366, 576, 813, 846, 1154, 1220, 1338, 1457
MslI CAYNNNNRTG 2 cut(s) 801, 1241
MspR9I CCNGG 2 cut(s) 1263, 1467
Mva1269I GAATGC 5 cut(s) 664, 769, 1072, 1137, 1350
MvaI CCWGG 2 cut(s) 1263, 1467
MvnI CGCG 2 cut(s) 245, 513
MwoI GCNNNNNNNGC 3 cut(s) 668, 677, 806
NcoI CCATGG 1 cut(s) 1402
NdeI CATATG 1 cut(s) 706
NdeII GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
NlaIV GGNNCC 3 cut(s) 639, 744, 1378
NmuCI GTSAC 3 cut(s) 859, 1162, 1357
NsiI ATGCAT 2 cut(s) 71, 1072
NspI RCATGY 3 cut(s) 478, 800, 1176
NspV TTCGAA 1 cut(s) 1487
PciI ACATGT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 2 cut(s) 537, 1326
PctI GAATGC 5 cut(s) 664, 769, 1072, 1137, 1350
PdmI GAANNNNTTC 2 cut(s) 647, 1440
PfeI GAWTC 4 cut(s) 1039, 1106, 1364, 1558
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 3 cut(s) 1193, 1324, 1501
PscI ACATGT 1 cut(s) 474
PsiI TTATAA 1 cut(s) 483
Psp1406I AACGTT 2 cut(s) 212, 237
Psp6I CCWGG 2 cut(s) 1261, 1465
PspGI CCWGG 2 cut(s) 1261, 1465
PspN4I GGNNCC 3 cut(s) 639, 744, 1378
PsuI RGATCY 1 cut(s) 1414
RsaI GTAC 6 cut(s) 200, 305, 992, 1094, 1179, 1267
RsaNI GTAC 6 cut(s) 199, 304, 991, 1093, 1178, 1266
RseI CAYNNNNRTG 2 cut(s) 801, 1241
SaqAI TTAA 9 cut(s) 276, 366, 576, 813, 846, 1154, 1220, 1338, 1457
SatI GCNGC 3 cut(s) 1192, 1323, 1500
Sau3AI GATC 6 cut(s) 592, 737, 891, 933, 1291, 1414
ScrFI CCNGG 2 cut(s) 1263, 1467
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 3 cut(s) 306, 516, 1067
SfcI CTRYAG 2 cut(s) 937, 1350
SfuI TTCGAA 1 cut(s) 1487
SmiMI CAYNNNNRTG 2 cut(s) 801, 1241
SmlI CTYRAG 1 cut(s) 1562
SmoI CTYRAG 1 cut(s) 1562
Sse9I AATT 8 cut(s) 102, 139, 222, 330, 843, 903, 921, 1331
SsiI CCGC 4 cut(s) 110, 489, 567, 671
SspMI CTAG 2 cut(s) 720, 972
StyD4I CCNGG 2 cut(s) 1261, 1465
StyI CCWWGG 2 cut(s) 787, 1402
TaaI ACNGT 4 cut(s) 819, 1097, 1199, 1391
TaiI ACGT 7 cut(s) 215, 240, 353, 543, 557, 957, 1573
TaqI TCGA 7 cut(s) 20, 531, 557, 700, 1021, 1487, 1587
TaqII GACCGA 1 cut(s) 1293
TasI AATT 8 cut(s) 102, 139, 222, 330, 843, 903, 921, 1331
TatI WGTACW 1 cut(s) 990
TfiI GAWTC 4 cut(s) 1039, 1106, 1364, 1558
Tru1I TTAA 9 cut(s) 276, 366, 576, 813, 846, 1154, 1220, 1338, 1457
Tru9I TTAA 9 cut(s) 276, 366, 576, 813, 846, 1154, 1220, 1338, 1457
TscAI CASTG 4 cut(s) 130, 1012, 1204, 1366
TseFI GTSAC 3 cut(s) 859, 1162, 1357
TseI GCWGC 3 cut(s) 1191, 1322, 1499
Tsp45I GTSAC 3 cut(s) 859, 1162, 1357
TspGWI ACGGA 1 cut(s) 1521
TspRI CASTG 4 cut(s) 130, 1012, 1204, 1366
Van91I CCANNNNNTGG 1 cut(s) 887
XapI RAATTY 4 cut(s) 102, 139, 222, 921
XceI RCATGY 3 cut(s) 478, 800, 1176
XmnI GAANNNNTTC 2 cut(s) 647, 1440
XspI CTAG 2 cut(s) 720, 972
ZraI GACGTC 1 cut(s) 555
Zsp2I ATGCAT 2 cut(s) 71, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.