Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2255851 .. 2259118

Gene Structure 3268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATGTCGTCCAGTACCGAAGATACGACGTCGAGTTCAGAGTCCGAAGCAGCAGACTCTGCGAAGGCGAACTCCACGCTGGAGTTCATAGAGAAGCTCTCAGATGTGCCAATGGGGCGGCTGCCCCCAAATATCGAATTCCAGAGGACACGTGTCGAGTGCAAGGCTGATGCTCCCATTCATACTGATACTTTTCAGTATAATGGTGCTTATGCATCAATGAGAGTCGATAATAACTTATTGGATAGCTTCTGTGACAACTTTAAAGTTGAAGTTATTAATCTTACGGAGGACGAAATGGAGTTTGATATGATTGGCATCGATCCAGCACTTGCCAACGCATTCCGGAGAATCCTCATAGCTGAGGTTCCCACAATGGCTATTGAAAAAGTTCTTATTGCAGACAATACATCAGTAATCCAAGATGAAGTACTTGCCCACAGGTTGGGTCTCATTCCGATCAAGGTTGACCCCAGATCATTTGAATTTACAGGAAATAATACACCAGATCAGAAGAATACCATTGTTTTTAAGCTCCATGTACAATGTAAACGAGGGGGGCAGCGTATTTCAGTAAAGTCAAAAGAATTGATTTGGTTGCCAAATGGGAGTGAGTTTCCATTGGAATCACAAGATACCAAGTCAGAGTCGTCATCAAAACAAAAAACATATACATCATTTACTTGCAGTCAGGATTCCTTGCCAGAATTTTCCGACAATCCAATTGCCCCCACGAGTGGAGATATTATAATTGCTAGACTAGGCCCTGGTCAGGTAATTGAACTGGAAGCACATGCTGTTAAGGGCATTGGTAAAACACATGCAAAATGGTCTCCAGTTGCCCCCGTTTGGTATAGGATGCTTCCTGAGGTTATAATATCGCAAGATATTGAAGATGAGATGGCTGAGAAACTTGTGGCAACTTGCCCAGTTAAAGTATTCGATGTTGAAGATATTGGCAACGGCAAGAAAAGGGCAACTGTAGCCAGGCCACGAGCTTGCACACTGTGCAGGGAGTGCATCAGAGAAGGGAAGGGTTGGGAGAATTCTATATCTCTGCAGCGTAAGAAGGATCATTTCATTTCTTTAGTCCTCATGACACAACTGTATAAATTTCAGTTTGAAATCACTTACTCGGGTTTCAGAACGTCTGAATTCAGTTTGAAATATCTGTTAAAATTGAATCGACTGGGGTATTGCCTCCCGAAGTCTTATTTACTGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005730 GO:0005736 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

410

Amino Acids

45.93

Weight (kDa)

5.6

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_L	PF01193	101 - 360	2.3e-11	RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_A_bac	PF01000	142 - 276	4.1e-10	RNA polymerase Rpb3/RpoA insert domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60620 AT1G60620
fragaria_vesca	FvH4_3g42690 FvH4_3g42690
malus_domestica	MD03G1029700.v1.1 MD11G1033100.v1.1 MD11G1033500.v1.1
prunus_persica	Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1 Prupe.6G025800_v2.0.a1
pyrus_communis	pycom03g02470 pycom11g02880
rosa_chinensis	RchiOBHm_Chr5g0076331
rosa_laevigata	RLG00000036618
rosa_multiflora	Rmu_sc0002400.1_g000006
rosa_roxburghii	Rroxscaffold_1G00005480
rosa_rugosa	Rorug05G0447400
rosa_samantha	Rh5AG502300 Rh5BG524100 Rh5CG547700 Rh5DG536200
rosa_wichuraiana	Rw5G046610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	749, 875
AatII	GACGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	345
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	2 cut(s)	317, 1080
AcsI	RAATTY	6 cut(s)	137, 485, 707, 1045, 1112, 1154
AcvI	CACGTG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	1008
AfaI	GTAC	3 cut(s)	16, 432, 543
AfiI	CCNNNNNNNGG	4 cut(s)	445, 737, 772, 849
AflIII	ACRYGT	2 cut(s)	149, 151
AgsI	TTSAA	9 cut(s)	272, 386, 485, 782, 893, 950, 1124, 1165, 1183
AjnI	CCWGG	2 cut(s)	766, 986
AluBI	AGCT	6 cut(s)	97, 249, 362, 535, 998, 1225
AluI	AGCT	6 cut(s)	97, 249, 362, 535, 998, 1225
Alw26I	GTCTC	2 cut(s)	455, 837
AlwI	GGATC	2 cut(s)	317, 1080
AlwNI	CAGNNNCTG	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	1135
Aor13HI	TCCGGA	1 cut(s)	345
AoxI	GGCC	2 cut(s)	763, 989
ApeKI	GCWGC	4 cut(s)	50, 121, 562, 1060
ApoI	RAATTY	6 cut(s)	137, 485, 707, 1045, 1112, 1154
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	764
AvaI	CYCGRG	1 cut(s)	1135
AxyI	CCTNAGG	1 cut(s)	867
BauI	CACGAG	2 cut(s)	733, 993
BbrPI	CACGTG	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	62, 108, 574, 1072
BccI	CCATC	1 cut(s)	895
BceAI	ACGGC	1 cut(s)	979
BciT130I	CCWGG	2 cut(s)	768, 988
BcoDI	GTCTC	2 cut(s)	455, 837
BfaI	CTAG	2 cut(s)	756, 761
BfmI	CTRYAG	2 cut(s)	981, 1058
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	5 cut(s)	51, 119, 122, 563, 1061
BlsI	GCNGC	5 cut(s)	52, 120, 123, 564, 1062
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	768, 988
BmeT110I	CYCGRG	1 cut(s)	1135
BmgT120I	GGNCC	1 cut(s)	764
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	768, 988
BmrI	ACTGGG	2 cut(s)	923, 1199
BmsI	GCATC	5 cut(s)	160, 224, 327, 849, 1029
BmuI	ACTGGG	2 cut(s)	923, 1199
BoxI	GACNNNNGTC	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	101, 819
Bpu10I	CCTNAGC	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	2 cut(s)	455, 837
BsaJI	CCNNGG	1 cut(s)	766
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	4 cut(s)	445, 737, 772, 849
Bse1I	ACTGG	5 cut(s)	12, 789, 836, 929, 1194
Bse21I	CCTNAGG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	317
BseAI	TCCGGA	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	768, 988
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	1 cut(s)	864
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	4 cut(s)	445, 737, 772, 849
BseMII	CTCAG	4 cut(s)	114, 354, 858, 897
BseNI	ACTGG	5 cut(s)	12, 789, 836, 929, 1194
BseXI	GCAGC	4 cut(s)	62, 108, 574, 1072
BsgI	GTGCAG	1 cut(s)	1030
BshFI	GGCC	2 cut(s)	765, 991
BshVI	ATCGAT	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	1135
BsiSI	CCGG	1 cut(s)	346
BslI	CCNNNNNNNGG	4 cut(s)	445, 737, 772, 849
BsmAI	GTCTC	2 cut(s)	455, 837
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	765, 991
Bso31I	GGTCTC	2 cut(s)	455, 837
BsoBI	CYCGRG	1 cut(s)	1135
Bsp13I	TCCGGA	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	5 cut(s)	322, 459, 476, 508, 1072
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	765, 991
BspCNI	CTCAG	4 cut(s)	113, 355, 859, 898
BspDI	ATCGAT	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	1095
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	1062
BspPI	GGATC	2 cut(s)	317, 1080
BspTNI	GGTCTC	2 cut(s)	455, 837
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	5 cut(s)	12, 789, 836, 929, 1194
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	5 cut(s)	322, 459, 476, 508, 1072
BssNI	GRCGYC	1 cut(s)	29
BssSI	CACGAG	2 cut(s)	733, 993
Bst2BI	CACGAG	2 cut(s)	733, 993
Bst2UI	CCWGG	2 cut(s)	768, 988
Bst4CI	ACNGT	3 cut(s)	982, 1008, 1107
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	3 cut(s)	59, 1008, 1017
BstAUI	TGTACA	1 cut(s)	541
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	1000
BstDEI	CTNAG	4 cut(s)	100, 363, 867, 906
BstF5I	GGATG	1 cut(s)	864
BstKTI	GATC	5 cut(s)	325, 462, 479, 511, 1075
BstMAI	GTCTC	2 cut(s)	455, 837
BstMBI	GATC	5 cut(s)	322, 459, 476, 508, 1072
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 115, 983, 1008, 1017
BstNI	CCWGG	2 cut(s)	768, 988
BstNSI	RCATGY	2 cut(s)	797, 824
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	766, 986
BstSFI	CTRYAG	2 cut(s)	981, 1058
BstV1I	GCAGC	4 cut(s)	62, 108, 574, 1072
Bsu15I	ATCGAT	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	765, 991
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	864
BtsIMutI	CAGTG	1 cut(s)	1004
Cac8I	GCNNGC	1 cut(s)	1000
CaiI	CAGNNNCTG	1 cut(s)	59
CciI	TCATGA	1 cut(s)	1095
Cfr13I	GGNCC	1 cut(s)	764
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	15, 431, 542
CviAII	CATG	4 cut(s)	539, 794, 821, 1096
CviQI	GTAC	3 cut(s)	15, 431, 542
DdeI	CTNAG	4 cut(s)	100, 363, 867, 906
DpnI	GATC	5 cut(s)	324, 461, 478, 510, 1074
DpnII	GATC	5 cut(s)	322, 459, 476, 508, 1072
DraI	TTTAAA	1 cut(s)	265
DraIII	CACNNNGTG	1 cut(s)	1008
Eco31I	GGTCTC	2 cut(s)	455, 837
Eco72I	CACGTG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	867
Eco88I	CYCGRG	1 cut(s)	1135
EcoO109I	RGGNCCY	1 cut(s)	764
EcoRI	GAATTC	3 cut(s)	137, 1045, 1154
EcoRII	CCWGG	2 cut(s)	766, 986
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	4 cut(s)	542, 797, 824, 1099
FatI	CATG	4 cut(s)	538, 793, 820, 1095
Fnu4HI	GCNGC	5 cut(s)	51, 119, 122, 563, 1061
FokI	GGATG	1 cut(s)	871
Fsp4HI	GCNGC	5 cut(s)	51, 119, 122, 563, 1061
FspBI	CTAG	2 cut(s)	756, 761
GluI	GCNGC	5 cut(s)	51, 119, 122, 563, 1061
GsuI	CTGGAG	2 cut(s)	101, 819
HaeIII	GGCC	2 cut(s)	765, 991
HapII	CCGG	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	4 cut(s)	542, 797, 824, 1099
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	8 cut(s)	41, 56, 225, 351, 626, 647, 695, 1183
HpaII	CCGG	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	469, 551
Hpy188III	TCNNGA	6 cut(s)	142, 346, 692, 866, 1096, 1204
Hpy8I	GTNNAC	2 cut(s)	469, 551
Hpy99I	CGWCG	2 cut(s)	31, 34
HpyAV	CCTTC	4 cut(s)	58, 1022, 1027, 1063
HpyCH4III	ACNGT	3 cut(s)	982, 1008, 1107
HpyCH4IV	ACGT	3 cut(s)	29, 151, 1148
HpyCH4V	TGCA	9 cut(s)	162, 215, 401, 687, 824, 1002, 1011, 1020, 1060
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 115, 983, 1008, 1017
HpyF3I	CTNAG	4 cut(s)	100, 363, 867, 906
HpySE526I	ACGT	3 cut(s)	29, 151, 1148
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	542, 797, 824, 1099
Kpn2I	TCCGGA	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	322, 459, 476, 508, 1072
LmnI	GCTCC	2 cut(s)	178, 540
Lsp1109I	GCAGC	4 cut(s)	62, 108, 574, 1072
LweI	GCATC	5 cut(s)	160, 224, 327, 849, 1029
MaeI	CTAG	2 cut(s)	756, 761
MaeII	ACGT	3 cut(s)	29, 151, 1148
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	5 cut(s)	324, 461, 478, 510, 1074
MboI	GATC	5 cut(s)	322, 459, 476, 508, 1072
MboII	GAAGA	4 cut(s)	32, 526, 905, 962
MfeI	CAATTG	1 cut(s)	723
MlyI	GAGTC	4 cut(s)	50, 50, 234, 656
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	8 cut(s)	138, 283, 358, 365, 548, 862, 1103, 1211
Mph1103I	ATGCAT	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	6 cut(s)	264, 279, 531, 801, 933, 1175
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	768, 988
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	2 cut(s)	768, 988
MwoI	GCNNNNNNNGC	5 cut(s)	59, 115, 983, 1008, 1017
NdeII	GATC	5 cut(s)	322, 459, 476, 508, 1072
NlaIII	CATG	4 cut(s)	542, 797, 824, 1099
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	797, 824
PagI	TCATGA	1 cut(s)	1095
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	351, 626, 695, 1183
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	5 cut(s)	52, 120, 123, 564, 1062
PleI	GAGTC	4 cut(s)	49, 50, 233, 655
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
PpsI	GAGTC	4 cut(s)	49, 50, 233, 655
Ppu21I	YACGTR	1 cut(s)	152
PshAI	GACNNNNGTC	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	279
PsiI	TTATAA	2 cut(s)	749, 875
Psp6I	CCWGG	2 cut(s)	766, 986
PspCI	CACGTG	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	766, 986
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	764
PstI	CTGCAG	1 cut(s)	1062
PstNI	CAGNNNCTG	1 cut(s)	59
RsaI	GTAC	3 cut(s)	16, 432, 543
RsaNI	GTAC	3 cut(s)	15, 431, 542
SaqAI	TTAA	6 cut(s)	264, 279, 531, 801, 933, 1175
SatI	GCNGC	5 cut(s)	51, 119, 122, 563, 1061
Sau3AI	GATC	5 cut(s)	322, 459, 476, 508, 1072
Sau96I	GGNCC	1 cut(s)	764
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	4 cut(s)	50, 50, 234, 656
ScrFI	CCNGG	2 cut(s)	768, 988
SfaNI	GCATC	5 cut(s)	160, 224, 327, 849, 1029
SfcI	CTRYAG	2 cut(s)	981, 1058
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	756, 761
StyD4I	CCNGG	2 cut(s)	766, 986
TaaI	ACNGT	3 cut(s)	982, 1008, 1107
TaiI	ACGT	3 cut(s)	32, 154, 1151
TaqI	TCGA	7 cut(s)	32, 135, 156, 228, 321, 942, 1186
TatI	WGTACW	2 cut(s)	430, 541
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	4 cut(s)	351, 626, 695, 1183
Tru1I	TTAA	6 cut(s)	264, 279, 531, 801, 933, 1175
Tru9I	TTAA	6 cut(s)	264, 279, 531, 801, 933, 1175
TscAI	CASTG	1 cut(s)	1011
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	50, 121, 562, 1060
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	76, 170, 441, 1069
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	1011
Van91I	CCANNNNNTGG	1 cut(s)	445
VspI	ATTAAT	1 cut(s)	279
XapI	RAATTY	6 cut(s)	137, 485, 707, 1045, 1112, 1154
XceI	RCATGY	2 cut(s)	797, 824
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	2 cut(s)	756, 761
ZraI	GACGTC	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.