pycom11g09180

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
7361377 .. 7366547
5171 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09180.2

Sequence Viewer

Length: 1851 bp
ATGTTCGAGGAGATTAGGGATAGCAAGGAGGTGGTTTCTCAGGAGACTTTGAAAGCCTTGCTTTCGTTCATGGAAACTCTGGAATCGGCCAAGGAGCTGCTCAGATTCGGAAGCGAAAGCAGCAAGATTTACCTGGTTTTAGAAAGGGAGCAAATTATGATGAAGTTTCATGAGGTGACAACTCGATTGGAGCAAGCTTTAAGTGGAATCTCCTATGAAAATCTTGACATATCAGATGAAGTTAAGGAACAGGTTGAGCTTGTTCTTGCTCAGTTTAGAAGAGCCAAAGGAAGGTTCGATTTGCCTGATGTTGAGCTCTATGGAGATCTCTTGTCCCTTTACAGTAAAAATGAGGCAGCAACAGATCCAGCTGTCCTAAGAAGATTGGTTGATAAGTTAGAATTGACAGGTATAGCTGAACTCACAGAAGAGTCACTAGCCTTGCATGAGATGGTTACTTTCAGTGGTGGGGATCCTGGGGAGAGCATCGAGAAGATGTCAATGCTACTGAAAAAAATTAAGGATTTTGTACAAACAGAAAACCCCGACATGGATGCTCCTGCAGCGGGAAAGAATATATTAGCAAGCTGCAGCGGGCAAACATCCACCGACAAGAATCACAAAGTCCCCCCAGTAATACCAGATGATTTTCGGTGTCCAATATCTTTGGAGTTAATGAATGACCCCATCATTGTTTCAACAGGGCAGACATATGAGCGTTCCTGTATTGAGAAGTGGCTGGAAGCAGGGCATGTGACATGTCCGAAAACACAACAAAGCCTCTCTAACACCACCCTCACACCGAACTATGCTTTACGTAGCCTCATAGCCCAGTGGTGTGAGGCAAATGGCATTGAACCACCAAAAAGACCCAATTCTCGACCCATTAAAACTACATCCGCCTGCTCTCCAGCAGAACGCACTAAGATTGAAATTCTCCTCCGCAAGCTGATGTCTGTTAGCCCGGAAGATCAAAGGTCTGCTGCAGGTGAAATCCGCCTTCTTGCCAAACGTAATGCAGACAATCGTGTGGCTATTGCTGAAGCTGGTGCAATACCCCTGCTTGTAGGCCTCCTTTCAACCCCCGACTCCCGCACCCAAGGGCATGCTGTCACAGCACTCCTCAACCTTTCCATATGTGAGGAGAACAAAGGAAGCATCATATCCTCTGGAGCAATTCCTGGTATTGTTCATGTCCTCAAGAATGGAGGCATGGAAGCACGGGAAAATGCAGCTGCGACCCTTTTTAGTCTTTCTGTCGTGGATGAAAATAAAGTTAGAATTGGTGCTTCGGGAGCCATTCCGCCACTTGTTACATTGCTGAGTGAAGGTACCCAAAGGGGGAAGAAAGATGCTGCAACTGCACTTTTTAACTTGTGCATTTATCAAGGTAACAAGGGGAAGGCAGTAAGGGCTGGTGTTGTTTCGACCCTAATGAAGCTGCTGACAGAACCTGGAGGTGGAATGGTGGATGAAGCACTGGCCATTCTAGCAATACTCTCTAGCCACGGTGAAGGGAAAGCAGCCATTGGAGCTGCTGAGGCAGTGCCTGTTTTGGTTGAAGTTATTGGGACAGGATCTCCCCGAAACAGAGAAAATGCAGCTGCGGTTTTGGTGCATCTTTGTTCTGGTGACCAACAACATATAGTCGAGGCTCAGGAACTTGGGGTGATGACTTTGTTATTGGAGTTGGCTCAAAATGGCACAGATAGAGGCAAGAGAAAGGCTGCACAGTTGCTTGAGCGAATGAATCGGTTTGCTGAGCAGCAGGCGCAGGCGCAGGCACAAGCTGATGATCAATCTGAGACCCAGTCACATCCAGCCACCACTACAGATGCCGTTGACAGATGA

Protein Analysis

617

Amino Acids

66.62

Weight (kDa)

5.28

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 977
Acc36I ACCTGC 1 cut(s) 977
Acc65I GGTACC 1 cut(s) 1331
AccB1I GGYRCC 1 cut(s) 1331
AciI CCGC 8 cut(s) 566, 594, 900, 943, 997, 1093, 1304, 1607
AclWI GGATC 4 cut(s) 359, 467, 480, 1585
AcoI YGGCCR 2 cut(s) 87, 1482
AcsI RAATTY 1 cut(s) 933
AcuI CTGAAG 1 cut(s) 1062
AfaI GTAC 2 cut(s) 531, 1333
AfiI CCNNNNNNNGG 5 cut(s) 291, 550, 566, 1341, 1460
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 6 cut(s) 52, 699, 857, 932, 1080, 1562
AjnI CCWGG 4 cut(s) 132, 475, 1180, 1453
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 38, 1799
AlwI GGATC 4 cut(s) 359, 467, 480, 1585
AlwNI CAGNNNCTG 2 cut(s) 1454, 1550
AoxI GGCC 3 cut(s) 87, 1069, 1482
ApoI RAATTY 1 cut(s) 933
Asp718I GGTACC 1 cut(s) 1331
AspLEI GCGC 2 cut(s) 1774, 1780
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 5 cut(s) 187, 1001, 1523, 1643, 1681
BalI TGGCCA 1 cut(s) 1484
BamHI GGATCC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 1331
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 1539
BccI CCATC 2 cut(s) 445, 695
BceAI ACGGC 1 cut(s) 1823
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 4 cut(s) 134, 477, 1182, 1455
BclI TGATCA 1 cut(s) 1795
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 2 cut(s) 38, 1799
BfaI CTAG 3 cut(s) 437, 1490, 1503
BfmI CTRYAG 4 cut(s) 561, 589, 984, 1830
BfuAI ACCTGC 1 cut(s) 977
BglII AGATCT 1 cut(s) 325
BlpI GCTNAGC 1 cut(s) 1761
Bme1390I CCNGG 5 cut(s) 134, 477, 965, 1182, 1455
BmiI GGNNCC 3 cut(s) 474, 1297, 1333
BmrFI CCNGG 5 cut(s) 134, 477, 965, 1182, 1455
BmrI ACTGGG 3 cut(s) 626, 826, 1804
BmsI GCATC 6 cut(s) 495, 544, 1167, 1342, 1627, 1825
BmuI ACTGGG 3 cut(s) 626, 826, 1804
BpmI CTGGAG 3 cut(s) 894, 1191, 1476
Bpu10I CCTNAGC 2 cut(s) 1539, 1656
Bpu1102I GCTNAGC 1 cut(s) 1761
BpuEI CTTGAG 2 cut(s) 1184, 1760
BpuMI CCSGG 1 cut(s) 965
BsaAI YACGTR 1 cut(s) 818
BsaI GGTCTC 1 cut(s) 1799
BsaJI CCNNGG 4 cut(s) 90, 476, 1099, 1507
BsaXI ACNNNNNCTCC 2 cut(s) 1564, 1594
Bsc4I CCNNNNNNNGG 5 cut(s) 291, 550, 566, 1341, 1460
Bse1I ACTGG 4 cut(s) 632, 832, 1485, 1810
Bse3DI GCAATG 1 cut(s) 1316
BseBI CCWGG 4 cut(s) 134, 477, 1182, 1455
BseDI CCNNGG 4 cut(s) 90, 476, 1099, 1507
BseGI GGATG 6 cut(s) 559, 602, 896, 1270, 1477, 1816
BseLI CCNNNNNNNGG 5 cut(s) 291, 550, 566, 1341, 1460
BseMI GCAATG 1 cut(s) 1316
BseMII CTCAG 8 cut(s) 53, 115, 284, 1313, 1530, 1670, 1752, 1794
BseNI ACTGG 4 cut(s) 632, 832, 1485, 1810
BseRI GAGGAG 4 cut(s) 23, 929, 1112, 1157
BsgI GTGCAG 2 cut(s) 1347, 1713
BshFI GGCC 3 cut(s) 89, 1071, 1484
BshNI GGYRCC 1 cut(s) 1331
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 1 cut(s) 965
BslFI GGGAC 3 cut(s) 319, 611, 1585
BslI CCNNNNNNNGG 5 cut(s) 291, 550, 566, 1341, 1460
BsmAI GTCTC 2 cut(s) 38, 1799
BsmFI GGGAC 3 cut(s) 319, 611, 1585
BsnI GGCC 3 cut(s) 89, 1071, 1484
Bso31I GGTCTC 1 cut(s) 1799
Bsp1286I GDGCHC 1 cut(s) 318
Bsp1407I TGTACA 1 cut(s) 529
Bsp143I GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
Bsp1720I GCTNAGC 1 cut(s) 1761
BspACI CCGC 8 cut(s) 566, 594, 900, 943, 997, 1093, 1304, 1607
BspANI GGCC 3 cut(s) 89, 1071, 1484
BspCNI CTCAG 8 cut(s) 52, 114, 283, 1314, 1531, 1669, 1753, 1795
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 474, 1297, 1333
BspMAI CTGCAG 3 cut(s) 565, 593, 988
BspMI ACCTGC 1 cut(s) 977
BspPI GGATC 4 cut(s) 359, 467, 480, 1585
BspQI GCTCTTC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 1331
BspTNI GGTCTC 1 cut(s) 1799
BsrDI GCAATG 1 cut(s) 1316
BsrGI TGTACA 1 cut(s) 529
BsrI ACTGG 4 cut(s) 632, 832, 1485, 1810
BssECI CCNNGG 4 cut(s) 90, 476, 1099, 1507
BssMI GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
BssT1I CCWWGG 2 cut(s) 90, 1099
Bst2UI CCWGG 4 cut(s) 134, 477, 1182, 1455
Bst4CI ACNGT 3 cut(s) 344, 1511, 1734
Bst6I CTCTTC 2 cut(s) 274, 423
BstAUI TGTACA 1 cut(s) 529
BstBAI YACGTR 1 cut(s) 818
BstC8I GCNNGC 9 cut(s) 195, 586, 596, 904, 947, 1107, 1770, 1776, 1782
BstDSI CCRYGG 1 cut(s) 1507
BstEII GGTNACC 1 cut(s) 1631
BstF5I GGATG 6 cut(s) 559, 602, 896, 1270, 1477, 1816
BstHHI GCGC 2 cut(s) 1774, 1780
BstKTI GATC 6 cut(s) 328, 367, 475, 973, 1580, 1798
BstMAI GTCTC 2 cut(s) 38, 1799
BstMBI GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
BstNI CCWGG 4 cut(s) 134, 477, 1182, 1455
BstNSI RCATGY 3 cut(s) 755, 762, 1109
BstPI GGTNACC 1 cut(s) 1631
BstSCI CCNGG 5 cut(s) 132, 475, 963, 1180, 1453
BstSFI CTRYAG 4 cut(s) 561, 589, 984, 1830
BstSNI TACGTA 1 cut(s) 818
BstX2I RGATCY 4 cut(s) 325, 364, 472, 1577
BstYI RGATCY 4 cut(s) 325, 364, 472, 1577
BsuRI GGCC 3 cut(s) 89, 1071, 1484
BtgI CCRYGG 1 cut(s) 1507
BtsCI GGATG 6 cut(s) 559, 602, 896, 1270, 1477, 1816
BtsI GCAGTG 1 cut(s) 1551
BtsIMutI CAGTG 4 cut(s) 469, 839, 1478, 1551
BveI ACCTGC 1 cut(s) 977
Cac8I GCNNGC 9 cut(s) 195, 586, 596, 904, 947, 1107, 1770, 1776, 1782
CaiI CAGNNNCTG 2 cut(s) 1454, 1550
CciI TCATGA 1 cut(s) 169
CfoI GCGC 2 cut(s) 1774, 1780
CsiI ACCWGGT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 530, 1332
CviAII CATG 9 cut(s) 70, 170, 446, 550, 752, 759, 1106, 1193, 1213
CviQI GTAC 2 cut(s) 530, 1332
DpnI GATC 6 cut(s) 327, 366, 474, 972, 1579, 1797
DpnII GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
EaeI YGGCCR 2 cut(s) 87, 1482
Eam1104I CTCTTC 2 cut(s) 274, 423
EarI CTCTTC 2 cut(s) 274, 423
EciI GGCGGA 3 cut(s) 889, 986, 1293
Ecl136II GAGCTC 1 cut(s) 316
Eco105I TACGTA 1 cut(s) 818
Eco130I CCWWGG 2 cut(s) 90, 1099
Eco147I AGGCCT 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 1799
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 1062
Eco91I GGTNACC 1 cut(s) 1631
EcoICRI GAGCTC 1 cut(s) 316
EcoO65I GGTNACC 1 cut(s) 1631
EcoRII CCWGG 4 cut(s) 132, 475, 1180, 1453
EcoT14I CCWWGG 2 cut(s) 90, 1099
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 90, 1099
FaeI CATG 9 cut(s) 73, 173, 449, 553, 755, 762, 1109, 1196, 1216
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 3 cut(s) 319, 611, 1585
FatI CATG 9 cut(s) 69, 169, 445, 549, 751, 758, 1105, 1192, 1212
FauI CCCGC 3 cut(s) 559, 587, 1100
FauNDI CATATG 2 cut(s) 712, 1136
FbaI TGATCA 1 cut(s) 1795
FokI GGATG 6 cut(s) 566, 589, 883, 1277, 1484, 1803
FriOI GRGCYC 1 cut(s) 318
FspBI CTAG 3 cut(s) 437, 1490, 1503
GlaI GCGC 2 cut(s) 1773, 1779
GsuI CTGGAG 3 cut(s) 894, 1191, 1476
HaeIII GGCC 3 cut(s) 89, 1071, 1484
HapII CCGG 1 cut(s) 965
HhaI GCGC 2 cut(s) 1774, 1780
Hin1II CATG 9 cut(s) 73, 173, 449, 553, 755, 762, 1109, 1196, 1216
Hin6I GCGC 2 cut(s) 1772, 1778
HinP1I GCGC 2 cut(s) 1772, 1778
HincII GTYRAC 1 cut(s) 1843
HindII GTYRAC 1 cut(s) 1843
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 7 cut(s) 83, 105, 207, 431, 616, 1088, 1750
HpaII CCGG 1 cut(s) 965
HphI GGTGA 5 cut(s) 187, 1001, 1523, 1643, 1681
Hpy166II GTNNAC 1 cut(s) 1843
Hpy188I TCNGA 5 cut(s) 104, 110, 235, 765, 1804
Hpy8I GTNNAC 1 cut(s) 1843
HpyAV CCTTC 5 cut(s) 285, 1010, 1322, 1396, 1508
HpyCH4III ACNGT 3 cut(s) 344, 1511, 1734
HpyCH4IV ACGT 2 cut(s) 817, 1012
HpySE526I ACGT 2 cut(s) 817, 1012
Hsp92II CATG 9 cut(s) 73, 173, 449, 553, 755, 762, 1109, 1196, 1216
HspAI GCGC 2 cut(s) 1772, 1778
KpnI GGTACC 1 cut(s) 1335
Ksp22I TGATCA 1 cut(s) 1795
Kzo9I GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
LguI GCTCTTC 1 cut(s) 274
LmnI GCTCC 7 cut(s) 94, 148, 190, 562, 1172, 1295, 1532
LweI GCATC 6 cut(s) 495, 544, 1167, 1342, 1627, 1825
MabI ACCWGGT 1 cut(s) 132
MaeI CTAG 3 cut(s) 437, 1490, 1503
MaeII ACGT 2 cut(s) 817, 1012
MaeIII GTNAC 9 cut(s) 175, 432, 454, 754, 1111, 1312, 1391, 1631, 1812
MalI GATC 6 cut(s) 327, 366, 474, 972, 1579, 1797
MboI GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
MboII GAAGA 6 cut(s) 291, 393, 440, 505, 980, 1357
MflI RGATCY 4 cut(s) 325, 364, 472, 1577
MhlI GDGCHC 1 cut(s) 318
MlsI TGGCCA 1 cut(s) 1484
MluCI AATT 7 cut(s) 153, 401, 516, 874, 933, 1176, 1281
MluNI TGGCCA 1 cut(s) 1484
MlyI GAGTC 2 cut(s) 440, 1082
Mox20I TGGCCA 1 cut(s) 1484
MscI TGGCCA 1 cut(s) 1484
MseI TTAA 6 cut(s) 200, 243, 519, 674, 888, 1371
Msp20I TGGCCA 1 cut(s) 1484
MspA1I CMGCKG 5 cut(s) 371, 566, 594, 1235, 1604
MspI CCGG 1 cut(s) 965
MspR9I CCNGG 5 cut(s) 134, 477, 965, 1182, 1455
MvaI CCWGG 4 cut(s) 134, 477, 1182, 1455
NciI CCSGG 1 cut(s) 965
NdeI CATATG 2 cut(s) 712, 1136
NdeII GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
NlaIII CATG 9 cut(s) 73, 173, 449, 553, 755, 762, 1109, 1196, 1216
NlaIV GGNNCC 3 cut(s) 474, 1297, 1333
NmuCI GTSAC 6 cut(s) 175, 432, 754, 1111, 1631, 1812
NspI RCATGY 3 cut(s) 755, 762, 1109
PaeI GCATGC 1 cut(s) 1109
PagI TCATGA 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 977
PceI AGGCCT 1 cut(s) 1071
PciI ACATGT 1 cut(s) 758
PciSI GCTCTTC 1 cut(s) 274
PfeI GAWTC 5 cut(s) 83, 105, 207, 616, 1750
PflFI GACNNNGTC 1 cut(s) 1810
PleI GAGTC 2 cut(s) 439, 1082
PpsI GAGTC 2 cut(s) 439, 1082
Ppu21I YACGTR 1 cut(s) 818
PscI ACATGT 1 cut(s) 758
Psp124BI GAGCTC 1 cut(s) 318
Psp6I CCWGG 4 cut(s) 132, 475, 1180, 1453
PspEI GGTNACC 1 cut(s) 1631
PspGI CCWGG 4 cut(s) 132, 475, 1180, 1453
PspN4I GGNNCC 3 cut(s) 474, 1297, 1333
PstI CTGCAG 3 cut(s) 565, 593, 988
PstNI CAGNNNCTG 2 cut(s) 1454, 1550
PsuI RGATCY 4 cut(s) 325, 364, 472, 1577
PsyI GACNNNGTC 1 cut(s) 1810
PvuII CAGCTG 3 cut(s) 371, 1235, 1604
RsaI GTAC 2 cut(s) 531, 1333
RsaNI GTAC 2 cut(s) 530, 1332
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 6 cut(s) 200, 243, 519, 674, 888, 1371
Sau3AI GATC 6 cut(s) 325, 364, 472, 970, 1577, 1795
SchI GAGTC 2 cut(s) 440, 1082
ScrFI CCNGG 5 cut(s) 134, 477, 965, 1182, 1455
SduI GDGCHC 1 cut(s) 318
SexAI ACCWGGT 1 cut(s) 132
SfaNI GCATC 6 cut(s) 495, 544, 1167, 1342, 1627, 1825
SfcI CTRYAG 4 cut(s) 561, 589, 984, 1830
SmlI CTYRAG 2 cut(s) 1199, 1739
SmoI CTYRAG 2 cut(s) 1199, 1739
SnaBI TACGTA 1 cut(s) 818
SphI GCATGC 1 cut(s) 1109
Sse9I AATT 7 cut(s) 153, 401, 516, 874, 933, 1176, 1281
SseBI AGGCCT 1 cut(s) 1071
SsiI CCGC 8 cut(s) 566, 594, 900, 943, 997, 1093, 1304, 1607
SspMI CTAG 3 cut(s) 437, 1490, 1503
SstI GAGCTC 1 cut(s) 318
StuI AGGCCT 1 cut(s) 1071
StyD4I CCNGG 5 cut(s) 132, 475, 963, 1180, 1453
StyI CCWWGG 2 cut(s) 90, 1099
TaaI ACNGT 3 cut(s) 344, 1511, 1734
TaiI ACGT 2 cut(s) 820, 1015
TaqI TCGA 7 cut(s) 6, 184, 297, 489, 880, 1427, 1650
TasI AATT 7 cut(s) 153, 401, 516, 874, 933, 1176, 1281
TatI WGTACW 1 cut(s) 529
TfiI GAWTC 5 cut(s) 83, 105, 207, 616, 1750
Tru1I TTAA 6 cut(s) 200, 243, 519, 674, 888, 1371
Tru9I TTAA 6 cut(s) 200, 243, 519, 674, 888, 1371
TscAI CASTG 4 cut(s) 469, 839, 1485, 1551
TseFI GTSAC 6 cut(s) 175, 432, 754, 1111, 1631, 1812
Tsp45I GTSAC 6 cut(s) 175, 432, 754, 1111, 1631, 1812
TspRI CASTG 4 cut(s) 469, 839, 1485, 1551
Tth111I GACNNNGTC 1 cut(s) 1810
XapI RAATTY 1 cut(s) 933
XceI RCATGY 3 cut(s) 755, 762, 1109
XspI CTAG 3 cut(s) 437, 1490, 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.