RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G46510 |
| fragaria_vesca | FvH4_3g35800 FvH4_3g35800 FvH4_3g35800 |
| malus_domestica | MD03G1096300.v1.1 MD11G1111000.v1.1 |
| prunus_persica | Prupe.6G079400_v2.0.a1 Prupe.6G079400_v2.0.a1 Prupe.6G079400_v2.0.a1 |
| pyrus_communis | pycom03g07890 pycom11g09180 |
| rosa_chinensis | RchiOBHm_Chr5g0063991 |
| rosa_laevigata | RLG00000035696 |
| rosa_multiflora | Rmu_sc0008881.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00016810 |
| rosa_rugosa | Rorug05G0361600 Rorug05G0361700 |
| rosa_samantha | Rh5BG435800 Rh5CG458900 Rh5DG449000 |
| rosa_wichuraiana | Rw5G039470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 977 |
| Acc36I | ACCTGC | 1 cut(s) | 977 |
| Acc65I | GGTACC | 1 cut(s) | 1331 |
| AccB1I | GGYRCC | 1 cut(s) | 1331 |
| AciI | CCGC | 8 cut(s) | 566, 594, 900, 943, 997, 1093, 1304, 1607 |
| AclWI | GGATC | 4 cut(s) | 359, 467, 480, 1585 |
| AcoI | YGGCCR | 2 cut(s) | 87, 1482 |
| AcsI | RAATTY | 1 cut(s) | 933 |
| AcuI | CTGAAG | 1 cut(s) | 1062 |
| AfaI | GTAC | 2 cut(s) | 531, 1333 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 291, 550, 566, 1341, 1460 |
| AflIII | ACRYGT | 1 cut(s) | 758 |
| AgsI | TTSAA | 6 cut(s) | 52, 699, 857, 932, 1080, 1562 |
| AjnI | CCWGG | 4 cut(s) | 132, 475, 1180, 1453 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 278, 310 |
| Alw21I | GWGCWC | 1 cut(s) | 318 |
| Alw26I | GTCTC | 2 cut(s) | 38, 1799 |
| AlwI | GGATC | 4 cut(s) | 359, 467, 480, 1585 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1454, 1550 |
| AoxI | GGCC | 3 cut(s) | 87, 1069, 1482 |
| ApoI | RAATTY | 1 cut(s) | 933 |
| Asp718I | GGTACC | 1 cut(s) | 1331 |
| AspLEI | GCGC | 2 cut(s) | 1774, 1780 |
| AsuC2I | CCSGG | 1 cut(s) | 965 |
| AsuHPI | GGTGA | 5 cut(s) | 187, 1001, 1523, 1643, 1681 |
| BalI | TGGCCA | 1 cut(s) | 1484 |
| BamHI | GGATCC | 1 cut(s) | 472 |
| BanI | GGYRCC | 1 cut(s) | 1331 |
| BanII | GRGCYC | 1 cut(s) | 318 |
| Bbv12I | GWGCWC | 1 cut(s) | 318 |
| BbvCI | CCTCAGC | 1 cut(s) | 1539 |
| BccI | CCATC | 2 cut(s) | 445, 695 |
| BceAI | ACGGC | 1 cut(s) | 1823 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 536, 570 |
| BciT130I | CCWGG | 4 cut(s) | 134, 477, 1182, 1455 |
| BclI | TGATCA | 1 cut(s) | 1795 |
| BcnI | CCSGG | 1 cut(s) | 965 |
| BcoDI | GTCTC | 2 cut(s) | 38, 1799 |
| BfaI | CTAG | 3 cut(s) | 437, 1490, 1503 |
| BfmI | CTRYAG | 4 cut(s) | 561, 589, 984, 1830 |
| BfuAI | ACCTGC | 1 cut(s) | 977 |
| BglII | AGATCT | 1 cut(s) | 325 |
| BlpI | GCTNAGC | 1 cut(s) | 1761 |
| Bme1390I | CCNGG | 5 cut(s) | 134, 477, 965, 1182, 1455 |
| BmiI | GGNNCC | 3 cut(s) | 474, 1297, 1333 |
| BmrFI | CCNGG | 5 cut(s) | 134, 477, 965, 1182, 1455 |
| BmrI | ACTGGG | 3 cut(s) | 626, 826, 1804 |
| BmsI | GCATC | 6 cut(s) | 495, 544, 1167, 1342, 1627, 1825 |
| BmuI | ACTGGG | 3 cut(s) | 626, 826, 1804 |
| BpmI | CTGGAG | 3 cut(s) | 894, 1191, 1476 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1539, 1656 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1761 |
| BpuEI | CTTGAG | 2 cut(s) | 1184, 1760 |
| BpuMI | CCSGG | 1 cut(s) | 965 |
| BsaAI | YACGTR | 1 cut(s) | 818 |
| BsaI | GGTCTC | 1 cut(s) | 1799 |
| BsaJI | CCNNGG | 4 cut(s) | 90, 476, 1099, 1507 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1564, 1594 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 291, 550, 566, 1341, 1460 |
| Bse1I | ACTGG | 4 cut(s) | 632, 832, 1485, 1810 |
| Bse3DI | GCAATG | 1 cut(s) | 1316 |
| BseBI | CCWGG | 4 cut(s) | 134, 477, 1182, 1455 |
| BseDI | CCNNGG | 4 cut(s) | 90, 476, 1099, 1507 |
| BseGI | GGATG | 6 cut(s) | 559, 602, 896, 1270, 1477, 1816 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 291, 550, 566, 1341, 1460 |
| BseMI | GCAATG | 1 cut(s) | 1316 |
| BseMII | CTCAG | 8 cut(s) | 53, 115, 284, 1313, 1530, 1670, 1752, 1794 |
| BseNI | ACTGG | 4 cut(s) | 632, 832, 1485, 1810 |
| BseRI | GAGGAG | 4 cut(s) | 23, 929, 1112, 1157 |
| BsgI | GTGCAG | 2 cut(s) | 1347, 1713 |
| BshFI | GGCC | 3 cut(s) | 89, 1071, 1484 |
| BshNI | GGYRCC | 1 cut(s) | 1331 |
| BsiHKAI | GWGCWC | 1 cut(s) | 318 |
| BsiSI | CCGG | 1 cut(s) | 965 |
| BslFI | GGGAC | 3 cut(s) | 319, 611, 1585 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 291, 550, 566, 1341, 1460 |
| BsmAI | GTCTC | 2 cut(s) | 38, 1799 |
| BsmFI | GGGAC | 3 cut(s) | 319, 611, 1585 |
| BsnI | GGCC | 3 cut(s) | 89, 1071, 1484 |
| Bso31I | GGTCTC | 1 cut(s) | 1799 |
| Bsp1286I | GDGCHC | 1 cut(s) | 318 |
| Bsp1407I | TGTACA | 1 cut(s) | 529 |
| Bsp143I | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1761 |
| BspACI | CCGC | 8 cut(s) | 566, 594, 900, 943, 997, 1093, 1304, 1607 |
| BspANI | GGCC | 3 cut(s) | 89, 1071, 1484 |
| BspCNI | CTCAG | 8 cut(s) | 52, 114, 283, 1314, 1531, 1669, 1753, 1795 |
| BspHI | TCATGA | 1 cut(s) | 169 |
| BspLI | GGNNCC | 3 cut(s) | 474, 1297, 1333 |
| BspMAI | CTGCAG | 3 cut(s) | 565, 593, 988 |
| BspMI | ACCTGC | 1 cut(s) | 977 |
| BspPI | GGATC | 4 cut(s) | 359, 467, 480, 1585 |
| BspQI | GCTCTTC | 1 cut(s) | 274 |
| BspT107I | GGYRCC | 1 cut(s) | 1331 |
| BspTNI | GGTCTC | 1 cut(s) | 1799 |
| BsrDI | GCAATG | 1 cut(s) | 1316 |
| BsrGI | TGTACA | 1 cut(s) | 529 |
| BsrI | ACTGG | 4 cut(s) | 632, 832, 1485, 1810 |
| BssECI | CCNNGG | 4 cut(s) | 90, 476, 1099, 1507 |
| BssMI | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| BssT1I | CCWWGG | 2 cut(s) | 90, 1099 |
| Bst2UI | CCWGG | 4 cut(s) | 134, 477, 1182, 1455 |
| Bst4CI | ACNGT | 3 cut(s) | 344, 1511, 1734 |
| Bst6I | CTCTTC | 2 cut(s) | 274, 423 |
| BstAUI | TGTACA | 1 cut(s) | 529 |
| BstBAI | YACGTR | 1 cut(s) | 818 |
| BstC8I | GCNNGC | 9 cut(s) | 195, 586, 596, 904, 947, 1107, 1770, 1776, 1782 |
| BstDSI | CCRYGG | 1 cut(s) | 1507 |
| BstEII | GGTNACC | 1 cut(s) | 1631 |
| BstF5I | GGATG | 6 cut(s) | 559, 602, 896, 1270, 1477, 1816 |
| BstHHI | GCGC | 2 cut(s) | 1774, 1780 |
| BstKTI | GATC | 6 cut(s) | 328, 367, 475, 973, 1580, 1798 |
| BstMAI | GTCTC | 2 cut(s) | 38, 1799 |
| BstMBI | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| BstNI | CCWGG | 4 cut(s) | 134, 477, 1182, 1455 |
| BstNSI | RCATGY | 3 cut(s) | 755, 762, 1109 |
| BstPI | GGTNACC | 1 cut(s) | 1631 |
| BstSCI | CCNGG | 5 cut(s) | 132, 475, 963, 1180, 1453 |
| BstSFI | CTRYAG | 4 cut(s) | 561, 589, 984, 1830 |
| BstSNI | TACGTA | 1 cut(s) | 818 |
| BstX2I | RGATCY | 4 cut(s) | 325, 364, 472, 1577 |
| BstYI | RGATCY | 4 cut(s) | 325, 364, 472, 1577 |
| BsuRI | GGCC | 3 cut(s) | 89, 1071, 1484 |
| BtgI | CCRYGG | 1 cut(s) | 1507 |
| BtsCI | GGATG | 6 cut(s) | 559, 602, 896, 1270, 1477, 1816 |
| BtsI | GCAGTG | 1 cut(s) | 1551 |
| BtsIMutI | CAGTG | 4 cut(s) | 469, 839, 1478, 1551 |
| BveI | ACCTGC | 1 cut(s) | 977 |
| Cac8I | GCNNGC | 9 cut(s) | 195, 586, 596, 904, 947, 1107, 1770, 1776, 1782 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1454, 1550 |
| CciI | TCATGA | 1 cut(s) | 169 |
| CfoI | GCGC | 2 cut(s) | 1774, 1780 |
| CsiI | ACCWGGT | 1 cut(s) | 132 |
| Csp6I | GTAC | 2 cut(s) | 530, 1332 |
| CviAII | CATG | 9 cut(s) | 70, 170, 446, 550, 752, 759, 1106, 1193, 1213 |
| CviQI | GTAC | 2 cut(s) | 530, 1332 |
| DpnI | GATC | 6 cut(s) | 327, 366, 474, 972, 1579, 1797 |
| DpnII | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| EaeI | YGGCCR | 2 cut(s) | 87, 1482 |
| Eam1104I | CTCTTC | 2 cut(s) | 274, 423 |
| EarI | CTCTTC | 2 cut(s) | 274, 423 |
| EciI | GGCGGA | 3 cut(s) | 889, 986, 1293 |
| Ecl136II | GAGCTC | 1 cut(s) | 316 |
| Eco105I | TACGTA | 1 cut(s) | 818 |
| Eco130I | CCWWGG | 2 cut(s) | 90, 1099 |
| Eco147I | AGGCCT | 1 cut(s) | 1071 |
| Eco24I | GRGCYC | 1 cut(s) | 318 |
| Eco31I | GGTCTC | 1 cut(s) | 1799 |
| Eco53kI | GAGCTC | 1 cut(s) | 316 |
| Eco57I | CTGAAG | 1 cut(s) | 1062 |
| Eco91I | GGTNACC | 1 cut(s) | 1631 |
| EcoICRI | GAGCTC | 1 cut(s) | 316 |
| EcoO65I | GGTNACC | 1 cut(s) | 1631 |
| EcoRII | CCWGG | 4 cut(s) | 132, 475, 1180, 1453 |
| EcoT14I | CCWWGG | 2 cut(s) | 90, 1099 |
| EcoT38I | GRGCYC | 1 cut(s) | 318 |
| ErhI | CCWWGG | 2 cut(s) | 90, 1099 |
| FaeI | CATG | 9 cut(s) | 73, 173, 449, 553, 755, 762, 1109, 1196, 1216 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 45, 77 |
| FaqI | GGGAC | 3 cut(s) | 319, 611, 1585 |
| FatI | CATG | 9 cut(s) | 69, 169, 445, 549, 751, 758, 1105, 1192, 1212 |
| FauI | CCCGC | 3 cut(s) | 559, 587, 1100 |
| FauNDI | CATATG | 2 cut(s) | 712, 1136 |
| FbaI | TGATCA | 1 cut(s) | 1795 |
| FokI | GGATG | 6 cut(s) | 566, 589, 883, 1277, 1484, 1803 |
| FriOI | GRGCYC | 1 cut(s) | 318 |
| FspBI | CTAG | 3 cut(s) | 437, 1490, 1503 |
| GlaI | GCGC | 2 cut(s) | 1773, 1779 |
| GsuI | CTGGAG | 3 cut(s) | 894, 1191, 1476 |
| HaeIII | GGCC | 3 cut(s) | 89, 1071, 1484 |
| HapII | CCGG | 1 cut(s) | 965 |
| HhaI | GCGC | 2 cut(s) | 1774, 1780 |
| Hin1II | CATG | 9 cut(s) | 73, 173, 449, 553, 755, 762, 1109, 1196, 1216 |
| Hin6I | GCGC | 2 cut(s) | 1772, 1778 |
| HinP1I | GCGC | 2 cut(s) | 1772, 1778 |
| HincII | GTYRAC | 1 cut(s) | 1843 |
| HindII | GTYRAC | 1 cut(s) | 1843 |
| HindIII | AAGCTT | 1 cut(s) | 195 |
| HinfI | GANTC | 7 cut(s) | 83, 105, 207, 431, 616, 1088, 1750 |
| HpaII | CCGG | 1 cut(s) | 965 |
| HphI | GGTGA | 5 cut(s) | 187, 1001, 1523, 1643, 1681 |
| Hpy166II | GTNNAC | 1 cut(s) | 1843 |
| Hpy188I | TCNGA | 5 cut(s) | 104, 110, 235, 765, 1804 |
| Hpy8I | GTNNAC | 1 cut(s) | 1843 |
| HpyAV | CCTTC | 5 cut(s) | 285, 1010, 1322, 1396, 1508 |
| HpyCH4III | ACNGT | 3 cut(s) | 344, 1511, 1734 |
| HpyCH4IV | ACGT | 2 cut(s) | 817, 1012 |
| HpySE526I | ACGT | 2 cut(s) | 817, 1012 |
| Hsp92II | CATG | 9 cut(s) | 73, 173, 449, 553, 755, 762, 1109, 1196, 1216 |
| HspAI | GCGC | 2 cut(s) | 1772, 1778 |
| KpnI | GGTACC | 1 cut(s) | 1335 |
| Ksp22I | TGATCA | 1 cut(s) | 1795 |
| Kzo9I | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| LguI | GCTCTTC | 1 cut(s) | 274 |
| LmnI | GCTCC | 7 cut(s) | 94, 148, 190, 562, 1172, 1295, 1532 |
| LweI | GCATC | 6 cut(s) | 495, 544, 1167, 1342, 1627, 1825 |
| MabI | ACCWGGT | 1 cut(s) | 132 |
| MaeI | CTAG | 3 cut(s) | 437, 1490, 1503 |
| MaeII | ACGT | 2 cut(s) | 817, 1012 |
| MaeIII | GTNAC | 9 cut(s) | 175, 432, 454, 754, 1111, 1312, 1391, 1631, 1812 |
| MalI | GATC | 6 cut(s) | 327, 366, 474, 972, 1579, 1797 |
| MboI | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| MboII | GAAGA | 6 cut(s) | 291, 393, 440, 505, 980, 1357 |
| MflI | RGATCY | 4 cut(s) | 325, 364, 472, 1577 |
| MhlI | GDGCHC | 1 cut(s) | 318 |
| MlsI | TGGCCA | 1 cut(s) | 1484 |
| MluCI | AATT | 7 cut(s) | 153, 401, 516, 874, 933, 1176, 1281 |
| MluNI | TGGCCA | 1 cut(s) | 1484 |
| MlyI | GAGTC | 2 cut(s) | 440, 1082 |
| Mox20I | TGGCCA | 1 cut(s) | 1484 |
| MscI | TGGCCA | 1 cut(s) | 1484 |
| MseI | TTAA | 6 cut(s) | 200, 243, 519, 674, 888, 1371 |
| Msp20I | TGGCCA | 1 cut(s) | 1484 |
| MspA1I | CMGCKG | 5 cut(s) | 371, 566, 594, 1235, 1604 |
| MspI | CCGG | 1 cut(s) | 965 |
| MspR9I | CCNGG | 5 cut(s) | 134, 477, 965, 1182, 1455 |
| MvaI | CCWGG | 4 cut(s) | 134, 477, 1182, 1455 |
| NciI | CCSGG | 1 cut(s) | 965 |
| NdeI | CATATG | 2 cut(s) | 712, 1136 |
| NdeII | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| NlaIII | CATG | 9 cut(s) | 73, 173, 449, 553, 755, 762, 1109, 1196, 1216 |
| NlaIV | GGNNCC | 3 cut(s) | 474, 1297, 1333 |
| NmuCI | GTSAC | 6 cut(s) | 175, 432, 754, 1111, 1631, 1812 |
| NspI | RCATGY | 3 cut(s) | 755, 762, 1109 |
| PaeI | GCATGC | 1 cut(s) | 1109 |
| PagI | TCATGA | 1 cut(s) | 169 |
| PaqCI | CACCTGC | 1 cut(s) | 977 |
| PceI | AGGCCT | 1 cut(s) | 1071 |
| PciI | ACATGT | 1 cut(s) | 758 |
| PciSI | GCTCTTC | 1 cut(s) | 274 |
| PfeI | GAWTC | 5 cut(s) | 83, 105, 207, 616, 1750 |
| PflFI | GACNNNGTC | 1 cut(s) | 1810 |
| PleI | GAGTC | 2 cut(s) | 439, 1082 |
| PpsI | GAGTC | 2 cut(s) | 439, 1082 |
| Ppu21I | YACGTR | 1 cut(s) | 818 |
| PscI | ACATGT | 1 cut(s) | 758 |
| Psp124BI | GAGCTC | 1 cut(s) | 318 |
| Psp6I | CCWGG | 4 cut(s) | 132, 475, 1180, 1453 |
| PspEI | GGTNACC | 1 cut(s) | 1631 |
| PspGI | CCWGG | 4 cut(s) | 132, 475, 1180, 1453 |
| PspN4I | GGNNCC | 3 cut(s) | 474, 1297, 1333 |
| PstI | CTGCAG | 3 cut(s) | 565, 593, 988 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1454, 1550 |
| PsuI | RGATCY | 4 cut(s) | 325, 364, 472, 1577 |
| PsyI | GACNNNGTC | 1 cut(s) | 1810 |
| PvuII | CAGCTG | 3 cut(s) | 371, 1235, 1604 |
| RsaI | GTAC | 2 cut(s) | 531, 1333 |
| RsaNI | GTAC | 2 cut(s) | 530, 1332 |
| SacI | GAGCTC | 1 cut(s) | 318 |
| SapI | GCTCTTC | 1 cut(s) | 274 |
| SaqAI | TTAA | 6 cut(s) | 200, 243, 519, 674, 888, 1371 |
| Sau3AI | GATC | 6 cut(s) | 325, 364, 472, 970, 1577, 1795 |
| SchI | GAGTC | 2 cut(s) | 440, 1082 |
| ScrFI | CCNGG | 5 cut(s) | 134, 477, 965, 1182, 1455 |
| SduI | GDGCHC | 1 cut(s) | 318 |
| SexAI | ACCWGGT | 1 cut(s) | 132 |
| SfaNI | GCATC | 6 cut(s) | 495, 544, 1167, 1342, 1627, 1825 |
| SfcI | CTRYAG | 4 cut(s) | 561, 589, 984, 1830 |
| SmlI | CTYRAG | 2 cut(s) | 1199, 1739 |
| SmoI | CTYRAG | 2 cut(s) | 1199, 1739 |
| SnaBI | TACGTA | 1 cut(s) | 818 |
| SphI | GCATGC | 1 cut(s) | 1109 |
| Sse9I | AATT | 7 cut(s) | 153, 401, 516, 874, 933, 1176, 1281 |
| SseBI | AGGCCT | 1 cut(s) | 1071 |
| SsiI | CCGC | 8 cut(s) | 566, 594, 900, 943, 997, 1093, 1304, 1607 |
| SspMI | CTAG | 3 cut(s) | 437, 1490, 1503 |
| SstI | GAGCTC | 1 cut(s) | 318 |
| StuI | AGGCCT | 1 cut(s) | 1071 |
| StyD4I | CCNGG | 5 cut(s) | 132, 475, 963, 1180, 1453 |
| StyI | CCWWGG | 2 cut(s) | 90, 1099 |
| TaaI | ACNGT | 3 cut(s) | 344, 1511, 1734 |
| TaiI | ACGT | 2 cut(s) | 820, 1015 |
| TaqI | TCGA | 7 cut(s) | 6, 184, 297, 489, 880, 1427, 1650 |
| TasI | AATT | 7 cut(s) | 153, 401, 516, 874, 933, 1176, 1281 |
| TatI | WGTACW | 1 cut(s) | 529 |
| TfiI | GAWTC | 5 cut(s) | 83, 105, 207, 616, 1750 |
| Tru1I | TTAA | 6 cut(s) | 200, 243, 519, 674, 888, 1371 |
| Tru9I | TTAA | 6 cut(s) | 200, 243, 519, 674, 888, 1371 |
| TscAI | CASTG | 4 cut(s) | 469, 839, 1485, 1551 |
| TseFI | GTSAC | 6 cut(s) | 175, 432, 754, 1111, 1631, 1812 |
| Tsp45I | GTSAC | 6 cut(s) | 175, 432, 754, 1111, 1631, 1812 |
| TspRI | CASTG | 4 cut(s) | 469, 839, 1485, 1551 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1810 |
| XapI | RAATTY | 1 cut(s) | 933 |
| XceI | RCATGY | 3 cut(s) | 755, 762, 1109 |
| XspI | CTAG | 3 cut(s) | 437, 1490, 1503 |