Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010178

Physical Location & Seq

Genomic Coordinates Forward (+)

47791409 .. 47792623

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0361700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGTTTTGGATTCATTGAAGTATCGAGCTCGTGGTCAACTGGTCTTGCTCTTGGAGTCTTGGTTCGATTCAGAAATCTTCAAGCTCAGGATCCAAAGGAGGAGGCTAAAGCAGAGACAAGGGATTGGATAAACACTGTGGTTCTCACCATTGGATCTCTTTATCAGGATGATTCTGCTGCACTTAGGAGTGCTGCTTCTACCTGGCACGCTGAACTGGCACCGCTCCTGAAGCCCTTGCTTGTAGTCAATATAGGAGGCCCTTCTGGTAAACTTTTGCACCTAAACCTCTGTTATGATTTCCATTTTGTCCTCTTATTAGGATATAATTATGTTCGATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004842 GO:0005102 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0015934 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019843 GO:0022625 GO:0022626 GO:0031347 GO:0031348 GO:0032446 GO:0032991 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048586 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0080134 GO:0097159 GO:0098542 GO:0140096 GO:1901363 GO:1901564 GO:1990904 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

115

Amino Acids

12.74

Weight (kDa)

6.25

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_fiss_Elm1	PF06258	42 - 91	1.9e-08	Mitochondrial fission ELM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46510
fragaria_vesca	FvH4_3g35800 FvH4_3g35800 FvH4_3g35800
malus_domestica	MD03G1096300.v1.1 MD11G1111000.v1.1
prunus_persica	Prupe.6G079400_v2.0.a1 Prupe.6G079400_v2.0.a1 Prupe.6G079400_v2.0.a1
pyrus_communis	pycom03g07890 pycom11g09180
rosa_chinensis	RchiOBHm_Chr5g0063991
rosa_laevigata	RLG00000035696
rosa_multiflora	Rmu_sc0008881.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016810
rosa_rugosa	Rorug05G0361600 Rorug05G0361700
rosa_samantha	Rh5BG435800 Rh5CG458900 Rh5DG449000
rosa_wichuraiana	Rw5G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	3 cut(s)	86, 99, 163
AcuI	CTGAAG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	20, 83
AjnI	CCWGG	1 cut(s)	203
AloI	GAACNNNNNNTCC	2 cut(s)	48, 80
AluBI	AGCT	2 cut(s)	30, 86
AluI	AGCT	2 cut(s)	30, 86
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	86, 99, 163
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	179, 194
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	32
BauI	CACGAG	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	166, 181
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	180, 195
BlsI	GCNGC	2 cut(s)	181, 196
Bme1390I	CCNGG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	93, 222
BmrFI	CCNGG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse1I	ACTGG	2 cut(s)	46, 222
BseBI	CCWGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	46, 222
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	166, 181
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	91, 155
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	93, 222
BspPI	GGATC	3 cut(s)	86, 99, 163
BspT107I	GGYRCC	1 cut(s)	220
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	46, 222
BssMI	GATC	2 cut(s)	91, 155
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	87, 185
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	94, 158
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	91, 155
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 232
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	166, 181
BstX2I	RGATCY	2 cut(s)	91, 155
BstYI	RGATCY	2 cut(s)	91, 155
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	260
CviJI	RGCY	5 cut(s)	30, 86, 107, 235, 261
CviKI_1	RGCY	5 cut(s)	30, 86, 107, 235, 261
DdeI	CTNAG	2 cut(s)	87, 185
DpnI	GATC	2 cut(s)	93, 157
DpnII	GATC	2 cut(s)	91, 155
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	32
FaiI	YATR	4 cut(s)	254, 297, 327, 333
Fnu4HI	GCNGC	2 cut(s)	180, 195
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	180, 195
GluI	GCNGC	2 cut(s)	180, 195
HaeIII	GGCC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	12, 57, 69, 173
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	39, 272
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	3 cut(s)	89, 167, 229
Hpy8I	GTNNAC	2 cut(s)	39, 272
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	182, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 232
HpyF3I	CTNAG	2 cut(s)	87, 185
Kzo9I	GATC	2 cut(s)	91, 155
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	8 cut(s)	27, 74, 152, 190, 203, 217, 242, 252
Lsp1109I	GCAGC	2 cut(s)	166, 181
MalI	GATC	2 cut(s)	93, 157
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	2 cut(s)	91, 155
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	2 cut(s)	91, 155
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	94, 97, 251, 299, 323
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	218, 232
NdeII	GATC	2 cut(s)	91, 155
NlaIV	GGNNCC	2 cut(s)	93, 222
PfeI	GAWTC	3 cut(s)	12, 69, 173
PkrI	GCNGC	2 cut(s)	181, 196
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	93, 222
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	91, 155
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	2 cut(s)	180, 195
Sau3AI	GATC	2 cut(s)	91, 155
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	5 cut(s)	32, 88, 206, 285, 291
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	26, 67, 337
TasI	AATT	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	12, 69, 173
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	2 cut(s)	179, 194
TspDTI	ATGAA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.