pycom11g16150

Reactive oxygen species modulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0017205
Physical Location & Seq
Forward (+)
17598034 .. 17600124
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGCTAAGGAAAACAGCTGCTTGACTCGCGTGGCCACCGGCGCTGTAATTGGCGGAGCTATCGGCGGTGCCGTCGGTTCGGTGTATGGGACATACGAGGCTTTAAGGTTTAAGGTGCCAGGATTTCTGAAGATCAGGCACATTGGACAAAGAACAGTGTCGAGTGCCGCTCTCTTTGGTCTTTTCTTAGGTGCCGGGAGCTTGATACATTGTGGGAAGTCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Romo1

Protein Analysis

76

Amino Acids

7.7

Weight (kDa)

9.92

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Romo1 PF10247 6 - 71 6.3e-21 Reactive mitochondrial oxygen species modulator 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07910
fragaria_vesca FvH4_3g28030
malus_domestica MD00G1126200.v1.1 MD00G1154200.v1.1
prunus_persica Prupe.4G268400_v2.0.a1
pyrus_communis pycom03g12330 pycom11g16150
rosa_chinensis RchiOBHm_Chr5g0050711
rosa_multiflora Rmu_sc0002117.1_g000026
rosa_roxburghii Rroxscaffold_1G00030070
rosa_rugosa Rorug05G0263200
rosa_samantha Rh5BG344500
rosa_wichuraiana Rw5G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 68, 115, 191
AccBSI CCGCTC 1 cut(s) 170
AccII CGCG 1 cut(s) 30
AciI CCGC 3 cut(s) 54, 66, 168
AcoI YGGCCR 1 cut(s) 33
AcuI CTGAAG 1 cut(s) 149
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 18, 59, 201
AluI AGCT 3 cut(s) 18, 59, 201
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 3 cut(s) 68, 115, 191
BbvI GCAGC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 2 cut(s) 19, 168
BlsI GCNGC 2 cut(s) 20, 169
Bme1390I CCNGG 2 cut(s) 120, 196
BmiI GGNNCC 3 cut(s) 70, 117, 193
BmrFI CCNGG 2 cut(s) 120, 196
BplI GAGNNNNNCTC 2 cut(s) 154, 186
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 38
BseBI CCWGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 3 cut(s) 68, 115, 191
BsiSI CCGG 2 cut(s) 39, 195
BslFI GGGAC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 3 cut(s) 54, 66, 168
BspANI GGCC 1 cut(s) 35
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 70, 117, 193
BspT107I GGYRCC 3 cut(s) 68, 115, 191
BsrBI CCGCTC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssMI GATC 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 6, 187
BstFNI CGCG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 27, 41
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 118, 194
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 162
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 38
CviJI RGCY 6 cut(s) 5, 18, 35, 59, 101, 201
CviKI_1 RGCY 6 cut(s) 5, 18, 35, 59, 101, 201
DdeI CTNAG 2 cut(s) 6, 187
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 33
EciI GGCGGA 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 118
FaiI YATR 3 cut(s) 87, 94, 223
FaqI GGGAC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 19, 168
Fsp4HI GCNGC 2 cut(s) 19, 168
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 19, 168
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 39, 195
HhaI GCGC 1 cut(s) 44
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 1 cut(s) 25
HpaII CCGG 2 cut(s) 39, 195
Hpy188I TCNGA 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 41
HpyF3I CTNAG 2 cut(s) 6, 187
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 56, 198
LpnPI CCDG 5 cut(s) 52, 105, 121, 132, 208
Lsp1109I GCAGC 1 cut(s) 5
MalI GATC 1 cut(s) 134
MbiI CCGCTC 1 cut(s) 170
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 1 cut(s) 91
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
MseI TTAA 3 cut(s) 104, 111, 226
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 2 cut(s) 39, 195
MspR9I CCNGG 2 cut(s) 120, 196
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 27, 41
NciI CCSGG 1 cut(s) 196
NdeII GATC 1 cut(s) 132
NlaIV GGNNCC 3 cut(s) 70, 117, 193
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PkrI GCNGC 2 cut(s) 20, 169
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 70, 117, 193
PvuII CAGCTG 1 cut(s) 18
SaqAI TTAA 3 cut(s) 104, 111, 226
SatI GCNGC 2 cut(s) 19, 168
Sau3AI GATC 1 cut(s) 132
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 120, 196
SetI ASST 6 cut(s) 20, 61, 110, 117, 193, 203
SgrAI CRCCGGYG 1 cut(s) 38
Sse9I AATT 1 cut(s) 48
SsiI CCGC 3 cut(s) 54, 66, 168
StyD4I CCNGG 2 cut(s) 118, 194
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 48
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 3 cut(s) 104, 111, 226
Tru9I TTAA 3 cut(s) 104, 111, 226
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 18
TspRI CASTG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.