Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009152

Physical Location & Seq

Genomic Coordinates Reverse (-)

20668204 .. 20669955

Gene Structure 1752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTGAACCTACTGAATTACTGGCTGACATGGATCGATCAGATAGCGAAAGCAAAGGATGAAGCTCTAAGCAGAAGGGATATACTGGACAAGGTTGAGAAATGGATGTCAGCCTGTGAGGAAGAGAGTTGGCTTGAGGACTACAATCGCGATGAAAACAGGTATAATGCGAGTAGAGGTGCGCACCTAAACCTCAAGCGTGCAGAGAAAGCACGTATTCTGGTTAACAAAATTCCAGCTCTTGTAGACACGTTGGTAGCCAAAACACGTGGGTGGGAGGAAGAGCGTGGCATATCATTTACTTATGATGGTGTTCCTCTCCTTGCTATGCTGGATGAGTATGCCATGCTGAGGCAAGAAAGAGAAGAAGAAAAGCGGAGGATGAGGGATCAGAAGAAGTACCAAGAGCTACAACATACAGAACAAGAAACCATATTTGGTTCAAAGCCTAGCCCGGCTCGACCAGTTGGCACAAAGAAGGTAGTAGGTCCCCGTGCAAATGGTGGCCCCAATGGAACTCCTAGCAGACGGCTTTCACTTAATGCTCATCAAAATGGAAGCAGGTCTGTAGTGAAAGATGGGAAGAGAGATCTTAGGCCCGTCGCTCCTATGAACTACGTTGAAATGGCAAAAGAGGATGCTGCCTCCCACATTTCTGGCACTGACACGGTTCCGGCTTCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008283 GO:0009524 GO:0009574 GO:0009791 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022622 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032506 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046983 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0051301 GO:0055028 GO:0061640 GO:0071840 GO:0071944 GO:0072686 GO:0090696 GO:0097435 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

229

Amino Acids

26.02

Weight (kDa)

8.85

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP65_ASE1	PF03999	14 - 152	2.2e-33	Microtubule associated protein (MAP65/ASE1 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55230 AT5G55230 AT5G55230
fragaria_vesca	FvH4_3g23560
malus_domestica	MD03G1193200.v1.1 MD11G1209400.v1.1
prunus_persica	Prupe.4G223500_v2.0.a1 Prupe.4G223500_v2.0.a1
pyrus_communis	pycom03g14580 pycom11g18490
rosa_chinensis	RchiOBHm_Chr5g0041551
rosa_laevigata	RLG00000034078
rosa_multiflora	Rmu_sc0008429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038960
rosa_rugosa	Rorug05G0193400 Rorug05G0193400 Rorug05G0193500
rosa_samantha	Rh5AG279200 Rh5BG283500 Rh5CG316400 Rh5DG293200
rosa_wichuraiana	Rw5G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	552
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	2 cut(s)	41, 396
AcsI	RAATTY	1 cut(s)	231
AcvI	CACGTG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	351
AflIII	ACRYGT	2 cut(s)	249, 266
AgsI	TTSAA	3 cut(s)	7, 444, 623
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AleI	CACNNNNGTG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	65, 239, 409
AluI	AGCT	3 cut(s)	65, 239, 409
AlwI	GGATC	2 cut(s)	41, 396
AoxI	GGCC	2 cut(s)	505, 596
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	3 cut(s)	488, 506, 597
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	672
AvaII	GGWCC	1 cut(s)	488
BbrPI	CACGTG	1 cut(s)	269
BbvCI	CCTCAGC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	2 cut(s)	302, 572
BceAI	ACGGC	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	455
BfaI	CTAG	2 cut(s)	450, 522
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	552
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	3 cut(s)	488, 506, 597
BmiI	GGNNCC	3 cut(s)	490, 508, 672
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	628
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	155, 179
BpuMI	CCSGG	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	36
BsaAI	YACGTR	2 cut(s)	215, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse1I	ACTGG	3 cut(s)	26, 90, 464
BseCI	ATCGAT	1 cut(s)	36
BseGI	GGATG	5 cut(s)	64, 111, 340, 387, 643
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	26, 90, 464
BseXI	GCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	507, 598
BshVI	ATCGAT	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	455, 674
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	507, 598
Bsp143I	GATC	4 cut(s)	33, 37, 388, 589
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	507, 598
BspCNI	CTCAG	1 cut(s)	342
BspDI	ATCGAT	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	490, 508, 672
BspMI	ACCTGC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	41, 396
BspQI	GCTCTTC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	26, 90, 464
BssMI	GATC	4 cut(s)	33, 37, 388, 589
Bst4CI	ACNGT	1 cut(s)	670
Bst6I	CTCTTC	3 cut(s)	117, 276, 578
BstBAI	YACGTR	2 cut(s)	215, 269
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	68, 350, 593
BstF5I	GGATG	5 cut(s)	64, 111, 340, 387, 643
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	4 cut(s)	36, 40, 391, 592
BstMBI	GATC	4 cut(s)	33, 37, 388, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	507, 598
BsuTUI	ATCGAT	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	5 cut(s)	64, 111, 340, 387, 643
BtsIMutI	CAGTG	1 cut(s)	660
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	488, 506, 597
ClaI	ATCGAT	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	400
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	2 cut(s)	30, 346
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	3 cut(s)	68, 350, 593
DpnI	GATC	4 cut(s)	35, 39, 390, 591
DpnII	GATC	4 cut(s)	33, 37, 388, 589
Eam1104I	CTCTTC	3 cut(s)	117, 276, 578
EarI	CTCTTC	3 cut(s)	117, 276, 578
Eco47I	GGWCC	1 cut(s)	488
Eco72I	CACGTG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	488
FaeI	CATG	2 cut(s)	33, 349
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	2 cut(s)	29, 345
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	5 cut(s)	71, 118, 347, 394, 650
Fsp4HI	GCNGC	1 cut(s)	642
FspAI	RTGCGCAY	1 cut(s)	183
FspBI	CTAG	2 cut(s)	450, 522
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	507, 598
HapII	CCGG	2 cut(s)	455, 674
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	33, 349
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	455, 674
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	2 cut(s)	226, 247
Hpy188I	TCNGA	2 cut(s)	42, 393
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	226, 247
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	2 cut(s)	69, 472
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4IV	ACGT	4 cut(s)	214, 251, 268, 618
HpyCH4V	TGCA	2 cut(s)	203, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	68, 350, 593
HpySE526I	ACGT	4 cut(s)	214, 251, 268, 618
Hsp92II	CATG	2 cut(s)	33, 349
HspAI	GCGC	1 cut(s)	182
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	33, 37, 388, 589
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	450, 522
MaeII	ACGT	4 cut(s)	214, 251, 268, 618
MalI	GATC	4 cut(s)	35, 39, 390, 591
MboI	GATC	4 cut(s)	33, 37, 388, 589
MboII	GAAGA	6 cut(s)	134, 293, 377, 380, 406, 595
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	2 cut(s)	16, 231
MseI	TTAA	2 cut(s)	225, 540
MslI	CAYNNNNRTG	2 cut(s)	271, 552
MspI	CCGG	2 cut(s)	455, 674
MspR9I	CCNGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	4 cut(s)	33, 37, 388, 589
NlaIII	CATG	2 cut(s)	33, 349
NlaIV	GGNNCC	3 cut(s)	490, 508, 672
NruI	TCGCGA	1 cut(s)	150
NsbI	TGCGCA	1 cut(s)	183
OliI	CACNNNNGTG	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	643
PmaCI	CACGTG	1 cut(s)	269
PmlI	CACGTG	1 cut(s)	269
Ppu21I	YACGTR	2 cut(s)	215, 269
PpuMI	RGGWCCY	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	488
PspCI	CACGTG	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	490, 508, 672
PspPI	GGNCC	3 cut(s)	488, 506, 597
PspPPI	RGGWCCY	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	589
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	271, 552
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	225, 540
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	4 cut(s)	33, 37, 388, 589
Sau96I	GGNCC	3 cut(s)	488, 506, 597
ScrFI	CCNGG	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	2 cut(s)	271, 552
SmlI	CTYRAG	2 cut(s)	134, 194
SmoI	CTYRAG	2 cut(s)	134, 194
Sse9I	AATT	2 cut(s)	16, 231
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	2 cut(s)	450, 522
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	670
TaiI	ACGT	4 cut(s)	217, 254, 271, 621
TaqI	TCGA	2 cut(s)	36, 460
TasI	AATT	2 cut(s)	16, 231
Tru1I	TTAA	2 cut(s)	225, 540
Tru9I	TTAA	2 cut(s)	225, 540
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	1 cut(s)	641
TspDTI	ATGAA	3 cut(s)	75, 168, 626
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	2 cut(s)	450, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.