Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009152

Physical Location & Seq

Genomic Coordinates Forward (+)

37741484 .. 37746243

Gene Structure 4760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG279200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTCACGGATGCTAAAAACCCTCTTGGAGAAACCACCTGCGGTTCTTTGCTGCAGAAACTGCAGGAAATTTGGGATGAAGTTGGTGAGAGTGATGAGCAACGAGACAGAATGCTTCTGCAATTAGAGCAGGAGTGTCTGGATGTATACAAGAGAAAGGTTGAGCTGGCAGCAAAGTCAAGGGCACAGCTTCTTCAGGCATTGTCCGATGGCAAACTTGAGCTTTCCTCTCTTCAATCAGCACTTGGAGAAAAAAGTTCTGTTGGAGTTCCAGAGAAGACTTCTGGAACAATCAAGGAACAGCTTGCGGCTATAGCACCAGCACTGGAACAGTTGTGGAAACAGAAAGAAGAGAGAGTAACCGAATTTTCTGATGTACAATCACAGATACAAAAGATTTGTGGTGAAATTGCTGGGAACCTTTATCTCAGTGAGACTCCTGCTGTTGATGAGTCTGATCTGTCCCTGAAAAAGTTAGATGAATATCAATCCCAACTTCAAGATCTTCAAAAGGAAAAGAGTGAAAGGCTGCACAAGGTGCTGGAATTTGTGAGCACAGTGCATGATCTTTGTGCCGTACTTGGAATAGACTTCTACAGTACTGTTACAGAGGTTCATCCTAGCTTGAATGACTCAACTGGTGTGCAATCCAAAAGCATTAGCAATGAAACTCTATCCAGGCTGGATAAGACAGTCTTAGCACTAGAAGAAGATAAGAAGCAGAGGTTGCATAAGCTTCAAGAGTCGGCAGCACAGCTAATTGATCTCTGGAATCTGATGGATACCCCTGAAGAGGAAAGGAAACTGTTTGACCATGTTACCTGTAACATATCAGCTTCAGTTGATGAAGTGACAGTTCCTGGGGCCCTTGCGCCAGATCTAATTGAGCAGACTGAGATCGAAGTTGGGAGGCTTGATCAGTTGAAATCAAGCAGGATGAAGGAAATTGCATTTAAAAAGCAAGGGGAGCTTGAGGAGATTTTTGCTCGAGCGCACATAGAAATAGACACTGAAGCTGCCAGAGAAAAGATTATGGAACTCATTGATTCTGGGAGTGTTGAGCCTACTGAGTTACTGGCTGACATGGATGATCAGATAGCAAAAGCGAAGGATGAAGCTCTCAGCAGAAAGGACATATTGGACAAAGTTGAGAAATGGATGTCAGCCTGTGAAGAGGAGAGTTGGCTTGAGGACTACAATCGTGTAAGTAAACCCTCAATTAGTATAATTTTACCTGATAAGAATTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008283 GO:0009524 GO:0009574 GO:0009791 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022622 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032506 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046983 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0051301 GO:0055028 GO:0061640 GO:0071840 GO:0071944 GO:0072686 GO:0090696 GO:0097435 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

417

Amino Acids

46.85

Weight (kDa)

4.62

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP65_ASE1	PF03999	16 - 401	9.4e-55	Microtubule associated protein (MAP65/ASE1 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55230 AT5G55230 AT5G55230
fragaria_vesca	FvH4_3g23560
malus_domestica	MD03G1193200.v1.1 MD11G1209400.v1.1
prunus_persica	Prupe.4G223500_v2.0.a1 Prupe.4G223500_v2.0.a1
pyrus_communis	pycom03g14580 pycom11g18490
rosa_chinensis	RchiOBHm_Chr5g0041551
rosa_laevigata	RLG00000034078
rosa_multiflora	Rmu_sc0008429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038960
rosa_rugosa	Rorug05G0193400 Rorug05G0193400 Rorug05G0193500
rosa_samantha	Rh5AG279200 Rh5BG283500 Rh5CG316400 Rh5DG293200
rosa_wichuraiana	Rw5G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	2 cut(s)	42, 308
AcsI	RAATTY	4 cut(s)	69, 365, 545, 1243
AcuI	CTGAAG	4 cut(s)	179, 810, 822, 1032
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	3 cut(s)	378, 579, 601
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	6 cut(s)	236, 500, 509, 628, 740, 925
AjnI	CCWGG	2 cut(s)	677, 859
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	2 cut(s)	99, 428
AlwNI	CAGNNNCTG	2 cut(s)	61, 860
Ama87I	CYCGRG	1 cut(s)	987
AoxI	GGCC	1 cut(s)	864
ApaI	GGGCCC	1 cut(s)	868
ApeKI	GCWGC	5 cut(s)	52, 170, 529, 749, 1016
ApoI	RAATTY	4 cut(s)	69, 365, 545, 1243
AspLEI	GCGC	2 cut(s)	874, 994
AspS9I	GGNCC	2 cut(s)	864, 865
AsuHPI	GGTGA	2 cut(s)	98, 416
AvaI	CYCGRG	1 cut(s)	987
BaeGI	GKGCMC	2 cut(s)	187, 868
BanII	GRGCYC	1 cut(s)	868
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	5 cut(s)	39, 182, 516, 761, 1003
BccI	CCATC	2 cut(s)	203, 772
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	2 cut(s)	679, 861
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	2 cut(s)	916, 1090
BcoDI	GTCTC	2 cut(s)	99, 428
BfaI	CTAG	2 cut(s)	621, 704
BfmI	CTRYAG	4 cut(s)	53, 62, 312, 595
BfuAI	ACCTGC	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	775
BglII	AGATCT	2 cut(s)	502, 877
BisI	GCNGC	6 cut(s)	53, 171, 309, 530, 750, 1017
BlsI	GCNGC	6 cut(s)	54, 172, 310, 531, 751, 1018
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	679, 861
BmeT110I	CYCGRG	1 cut(s)	987
BmgT120I	GGNCC	2 cut(s)	864, 865
BmiI	GGNNCC	3 cut(s)	419, 865, 866
BmrFI	CCNGG	2 cut(s)	679, 861
BpiI	GAAGAC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpuEI	CTTGAG	3 cut(s)	239, 992, 1208
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	860
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse1I	ACTGG	3 cut(s)	330, 643, 1080
Bse3DI	GCAATG	1 cut(s)	670
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	679, 861
BseDI	CCNNGG	1 cut(s)	860
BseGI	GGATG	8 cut(s)	16, 82, 148, 616, 942, 1093, 1117, 1164
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	4 cut(s)	442, 885, 1059, 1135
BseNI	ACTGG	3 cut(s)	330, 643, 1080
BseRI	GAGGAG	2 cut(s)	989, 1190
BseSI	GKGCMC	2 cut(s)	187, 868
BseXI	GCAGC	5 cut(s)	39, 182, 516, 761, 1003
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	515
BshFI	GGCC	1 cut(s)	866
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	987
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmAI	GTCTC	2 cut(s)	99, 428
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	866
BsoBI	CYCGRG	1 cut(s)	987
Bsp120I	GGGCCC	1 cut(s)	864
Bsp1286I	GDGCHC	3 cut(s)	187, 557, 868
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
BspACI	CCGC	2 cut(s)	42, 308
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	4 cut(s)	441, 886, 1060, 1134
BspLI	GGNNCC	3 cut(s)	419, 865, 866
BspMAI	CTGCAG	2 cut(s)	57, 66
BspMI	ACCTGC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	670
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	3 cut(s)	330, 643, 1080
BssECI	CCNNGG	1 cut(s)	860
BssMI	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
BssNAI	GTATAC	1 cut(s)	148
Bst1107I	GTATAC	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	679, 861
Bst4CI	ACNGT	7 cut(s)	333, 559, 599, 604, 694, 807, 856
Bst6I	CTCTTC	4 cut(s)	237, 345, 786, 1167
BstAPI	GCANNNNNTGC	3 cut(s)	61, 538, 727
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	168, 306
BstDEI	CTNAG	5 cut(s)	428, 697, 894, 1068, 1121
BstF5I	GGATG	8 cut(s)	16, 82, 148, 616, 942, 1093, 1117, 1164
BstHHI	GCGC	2 cut(s)	874, 994
BstKTI	GATC	8 cut(s)	460, 505, 568, 766, 880, 900, 919, 1093
BstMAI	GTCTC	2 cut(s)	99, 428
BstMBI	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 127, 314, 538, 727, 967
BstNI	CCWGG	2 cut(s)	679, 861
BstSCI	CCNGG	2 cut(s)	677, 859
BstSFI	CTRYAG	4 cut(s)	53, 62, 312, 595
BstSLI	GKGCMC	2 cut(s)	187, 868
BstV1I	GCAGC	5 cut(s)	39, 182, 516, 761, 1003
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	502, 877
BstYI	RGATCY	2 cut(s)	502, 877
BstZ17I	GTATAC	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	866
BtsCI	GGATG	8 cut(s)	16, 82, 148, 616, 942, 1093, 1117, 1164
BtsIMutI	CAGTG	4 cut(s)	323, 436, 564, 1008
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	168, 306
CaiI	CAGNNNCTG	2 cut(s)	61, 860
CfoI	GCGC	2 cut(s)	874, 994
Cfr13I	GGNCC	2 cut(s)	864, 865
Csp6I	GTAC	3 cut(s)	377, 578, 600
CviAII	CATG	3 cut(s)	563, 815, 1084
CviQI	GTAC	3 cut(s)	377, 578, 600
DdeI	CTNAG	5 cut(s)	428, 697, 894, 1068, 1121
DpnI	GATC	8 cut(s)	459, 504, 567, 765, 879, 899, 918, 1092
DpnII	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
DraI	TTTAAA	1 cut(s)	955
DraIII	CACNNNGTG	1 cut(s)	538
Eam1104I	CTCTTC	4 cut(s)	237, 345, 786, 1167
EarI	CTCTTC	4 cut(s)	237, 345, 786, 1167
Eco24I	GRGCYC	1 cut(s)	868
Eco57I	CTGAAG	4 cut(s)	179, 810, 822, 1032
Eco88I	CYCGRG	1 cut(s)	987
EcoO109I	RGGNCCY	2 cut(s)	864, 865
EcoRII	CCWGG	2 cut(s)	677, 859
EcoT38I	GRGCYC	1 cut(s)	868
FaeI	CATG	3 cut(s)	566, 818, 1087
FalI	AAGNNNNNCTT	4 cut(s)	680, 712, 954, 986
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	3 cut(s)	562, 814, 1083
FbaI	TGATCA	2 cut(s)	916, 1090
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	6 cut(s)	53, 171, 309, 530, 750, 1017
FokI	GGATG	8 cut(s)	23, 89, 155, 603, 949, 1100, 1124, 1171
FriOI	GRGCYC	1 cut(s)	868
Fsp4HI	GCNGC	6 cut(s)	53, 171, 309, 530, 750, 1017
FspBI	CTAG	2 cut(s)	621, 704
GlaI	GCGC	2 cut(s)	873, 993
GluI	GCNGC	6 cut(s)	53, 171, 309, 530, 750, 1017
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	866
HhaI	GCGC	2 cut(s)	874, 994
Hin1II	CATG	3 cut(s)	566, 818, 1087
Hin6I	GCGC	2 cut(s)	872, 992
HinP1I	GCGC	2 cut(s)	872, 992
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	6 cut(s)	436, 452, 632, 743, 772, 1046
HphI	GGTGA	2 cut(s)	98, 416
Hpy166II	GTNNAC	2 cut(s)	148, 1211
Hpy188I	TCNGA	5 cut(s)	208, 373, 457, 777, 1095
Hpy188III	TCNNGA	6 cut(s)	140, 272, 285, 500, 740, 769
Hpy8I	GTNNAC	2 cut(s)	148, 1211
HpyAV	CCTTC	2 cut(s)	934, 1102
HpyCH4III	ACNGT	7 cut(s)	333, 559, 599, 604, 694, 807, 856
HpyCH4V	TGCA	8 cut(s)	55, 64, 121, 532, 562, 646, 730, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 127, 314, 538, 727, 967
HpyF3I	CTNAG	5 cut(s)	428, 697, 894, 1068, 1121
Hsp92II	CATG	3 cut(s)	566, 818, 1087
HspAI	GCGC	2 cut(s)	872, 992
Ksp22I	TGATCA	2 cut(s)	916, 1090
Kzo9I	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
LmnI	GCTCC	1 cut(s)	967
Lsp1109I	GCAGC	5 cut(s)	39, 182, 516, 761, 1003
MaeI	CTAG	2 cut(s)	621, 704
MaeIII	GTNAC	7 cut(s)	4, 358, 604, 817, 824, 850, 1071
MalI	GATC	8 cut(s)	459, 504, 567, 765, 879, 899, 918, 1092
MboI	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
MboII	GAAGA	9 cut(s)	185, 224, 289, 362, 497, 719, 722, 803, 1184
MflI	RGATCY	2 cut(s)	502, 877
MhlI	GDGCHC	3 cut(s)	187, 557, 868
MlyI	GAGTC	4 cut(s)	430, 461, 626, 752
MmeI	TCCRAC	1 cut(s)	244
MseI	TTAA	1 cut(s)	954
MspR9I	CCNGG	2 cut(s)	679, 861
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	2 cut(s)	679, 861
MwoI	GCNNNNNNNGC	6 cut(s)	61, 127, 314, 538, 727, 967
NdeII	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
NlaIII	CATG	3 cut(s)	566, 818, 1087
NlaIV	GGNNCC	3 cut(s)	419, 865, 866
NmuCI	GTSAC	2 cut(s)	4, 850
PaeR7I	CTCGAG	1 cut(s)	987
PaqCI	CACCTGC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	772, 1046
PkrI	GCNGC	6 cut(s)	54, 172, 310, 531, 751, 1018
PleI	GAGTC	4 cut(s)	430, 460, 626, 751
PpsI	GAGTC	4 cut(s)	430, 460, 626, 751
Psp6I	CCWGG	2 cut(s)	677, 859
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	677, 859
PspN4I	GGNNCC	3 cut(s)	419, 865, 866
PspOMI	GGGCCC	1 cut(s)	864
PspPI	GGNCC	2 cut(s)	864, 865
PspXI	VCTCGAGB	1 cut(s)	987
PstI	CTGCAG	2 cut(s)	57, 66
PstNI	CAGNNNCTG	2 cut(s)	61, 860
PsuI	RGATCY	2 cut(s)	502, 877
RsaI	GTAC	3 cut(s)	378, 579, 601
RsaNI	GTAC	3 cut(s)	377, 578, 600
SaqAI	TTAA	1 cut(s)	954
SatI	GCNGC	6 cut(s)	53, 171, 309, 530, 750, 1017
Sau3AI	GATC	8 cut(s)	457, 502, 565, 763, 877, 897, 916, 1090
Sau96I	GGNCC	2 cut(s)	864, 865
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	4 cut(s)	430, 461, 626, 752
ScrFI	CCNGG	2 cut(s)	679, 861
SduI	GDGCHC	3 cut(s)	187, 557, 868
SfcI	CTRYAG	4 cut(s)	53, 62, 312, 595
Sfr274I	CTCGAG	1 cut(s)	987
SlaI	CTCGAG	1 cut(s)	987
SmlI	CTYRAG	4 cut(s)	218, 971, 987, 1187
SmoI	CTYRAG	4 cut(s)	218, 971, 987, 1187
SsiI	CCGC	2 cut(s)	42, 308
SspMI	CTAG	2 cut(s)	621, 704
StyD4I	CCNGG	2 cut(s)	677, 859
TaaI	ACNGT	7 cut(s)	333, 559, 599, 604, 694, 807, 856
TaqI	TCGA	2 cut(s)	900, 988
TatI	WGTACW	2 cut(s)	376, 599
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	772, 1046
Tru1I	TTAA	1 cut(s)	954
Tru9I	TTAA	1 cut(s)	954
TscAI	CASTG	4 cut(s)	330, 436, 564, 1015
TseFI	GTSAC	2 cut(s)	4, 850
TseI	GCWGC	5 cut(s)	52, 170, 529, 749, 1016
Tsp45I	GTSAC	2 cut(s)	4, 850
TspDTI	ATGAA	7 cut(s)	93, 495, 605, 681, 861, 953, 1128
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	4 cut(s)	330, 436, 564, 1015
XapI	RAATTY	4 cut(s)	69, 365, 545, 1243
XhoI	CTCGAG	1 cut(s)	987
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	621, 704
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.