Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009152

Physical Location & Seq

Genomic Coordinates Reverse (-)

19036149 .. 19039884

Gene Structure 3736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0193500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTGTTCTTCTCCTACTTCAAGGAGTTGGTGGGCAGAGAAGTCACTGTGGAGCTCAAGAACGACCTTGCGATTAGGGGCACACTTCACTCCGTCGATCAGTATCTCAACATAAAGCTTGAGAACACTAGGGTTGTTGACCAGGACAAGTACCCCCACATGCTTTCAGTGAGGAACTGTTTTATCAGGGGATCAGTTGTGAGATATGTTCAACTACCTCCAGAGGGAGTTGATGTTGAACTGCTGCACGATGCCACCAGAAGGGAAGCTCGGGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000922 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008283 GO:0009524 GO:0009574 GO:0009791 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022622 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032506 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046983 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0051301 GO:0055028 GO:0061640 GO:0071840 GO:0071944 GO:0072686 GO:0090696 GO:0097435 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

93

Amino Acids

10.76

Weight (kDa)

6.83

Isoelectric Point (pI)

14.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	6 - 71	3.5e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55230 AT5G55230 AT5G55230
fragaria_vesca	FvH4_3g23560
malus_domestica	MD03G1193200.v1.1 MD11G1209400.v1.1
prunus_persica	Prupe.4G223500_v2.0.a1 Prupe.4G223500_v2.0.a1
pyrus_communis	pycom03g14580 pycom11g18490
rosa_chinensis	RchiOBHm_Chr5g0041551
rosa_laevigata	RLG00000034078
rosa_multiflora	Rmu_sc0008429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00038960
rosa_rugosa	Rorug05G0193400 Rorug05G0193400 Rorug05G0193500
rosa_samantha	Rh5AG279200 Rh5BG283500 Rh5CG316400 Rh5DG293200
rosa_wichuraiana	Rw5G026290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	224, 261
AgsI	TTSAA	3 cut(s)	22, 212, 239
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	55, 118, 269
AluI	AGCT	3 cut(s)	55, 118, 269
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	143
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	41, 140
BsaBI	GATNNNNATC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 261
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	143
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	224, 261
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	224, 261
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	57, 83
Bsp143I	GATC	2 cut(s)	97, 191
BspPI	GGATC	1 cut(s)	199
BssMI	GATC	2 cut(s)	97, 191
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	49, 179
BstKTI	GATC	2 cut(s)	100, 194
BstMBI	GATC	2 cut(s)	97, 191
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	45, 174
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	3 cut(s)	55, 118, 269
CviKI_1	RGCY	3 cut(s)	55, 118, 269
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	2 cut(s)	99, 193
DpnII	GATC	2 cut(s)	97, 191
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	163
FaiI	YATR	3 cut(s)	113, 161, 207
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	204
Hin1II	CATG	1 cut(s)	163
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	58, 221
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	49, 179
HpyCH4V	TGCA	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	97, 191
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	128, 155, 172, 234, 271
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	99, 193
MboI	GATC	2 cut(s)	97, 191
MhlI	GDGCHC	2 cut(s)	57, 83
MnlI	CCTC	3 cut(s)	165, 217, 228
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	97, 191
NlaIII	CATG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	97, 191
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	57, 83
SetI	ASST	5 cut(s)	57, 69, 120, 220, 271
SfaNI	GCATC	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	56, 119
SmoI	CTYRAG	2 cut(s)	56, 119
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	49, 179
TaqI	TCGA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	52, 174
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	52, 174
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.