pycom11g21360

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014459
Physical Location & Seq
Reverse (-)
24516721 .. 24518582
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 768 bp
ATGTTGGCCATTTTTCACAAAGCTTTTGCTCATCCGCCGGAGGAGCTGAACAGTCCGTCGTCTTACAAAGGAAGCAAGAAACCTAAGCACCCAGAAGAGACTCTCAGAGACTTCCTCTCCCACCATCCTCACAACTCCCTCTCCATGGGATTTGGCGATGCTGCTGTCCTTGCTTACGTCAAGCCAGATCAAGGCTCCTACTCCAAACACCAGACGTTGTTCTGTGGGTTTGATGACATATACTGCTTGTTTTTGGGGAGCTTGAACAATCTGTGTTTACTGAATAAGCAGTATGGTCTAACAAAATGCTCCAATGAGGCCATGTTTGTGATTGAAGCTTATAGAACCCTTCGAGATCGTGGTCCGTACCCAGCTGATCAGGTTGTCAAAGATCTTGAAGGAAGCTTTGCTTTTGTTGTCTATGACAGCAAGGGTGGCAATGTCTTTGCCGCACTGGGTTCTGATGGTGGAGAACAACTGTATTGGGGCATTGCAGCCGATGGATCTGTGGTTATTTCTGATGAATTGGAGGTCATAAAAGAGGGTTGTGCTAAATCATTTGCCCCTTTCCCAAAAGGATGCATGTTTCATAGTGAGGGAGGATTGATGAGCTTTGAGCATCCAATGAACAAGATGAAGGCCATGCCAAGGGTAGATAGTGAGGGGGCAATGTGCGGGGCCAACTTCAAAGTCGATAAATATACAAGGATCAACAGTATTCCACGTGTAGGAAGTCAGACCGACTGGACTGAGTGGGCCTCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

256

Amino Acids

28.17

Weight (kDa)

6.05

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 231 7.3e-107 Aluminium induced protein
GATase_7 PF13537 110 - 179 9.6e-06 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27450
fragaria_vesca FvH4_3g20560
malus_domestica MD03G1224100.v1.1 MD11G1241900.v1.1
prunus_persica Prupe.4G185400_v2.0.a1
pyrus_communis pycom03g17250 pycom11g21360
rosa_chinensis RchiOBHm_Chr5g0034571
rosa_laevigata RLG00000033555
rosa_multiflora Rmu_sc0003126.1_g000004
rosa_roxburghii Rroxscaffold_1G00045760
rosa_rugosa Rorug05G0146500
rosa_samantha Rh5AG238900 Rh5BG239400 Rh5CG269900
rosa_wichuraiana Rw5G021780 Rw5G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 450, 675
AclWI GGATC 2 cut(s) 511, 716
AcoI YGGCCR 1 cut(s) 6
AcvI CACGTG 1 cut(s) 725
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 145, 191, 648, 728
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 4 cut(s) 265, 335, 398, 688
AluBI AGCT 7 cut(s) 23, 46, 261, 338, 374, 405, 612
AluI AGCT 7 cut(s) 23, 46, 261, 338, 374, 405, 612
Alw26I GTCTC 2 cut(s) 92, 102
AlwI GGATC 2 cut(s) 511, 716
AoxI GGCC 5 cut(s) 6, 318, 639, 678, 756
ApeKI GCWGC 2 cut(s) 161, 494
AspS9I GGNCC 3 cut(s) 362, 678, 756
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 725
BbvI GCAGC 2 cut(s) 148, 506
BccI CCATC 3 cut(s) 132, 458, 494
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 92, 102
BglII AGATCT 1 cut(s) 391
BisI GCNGC 3 cut(s) 162, 450, 495
BlsI GCNGC 3 cut(s) 163, 451, 496
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 3 cut(s) 362, 678, 756
BmiI GGNNCC 2 cut(s) 196, 679
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 3 cut(s) 148, 569, 628
BmuI ACTGGG 1 cut(s) 464
BplI GAGNNNNNCTC 3 cut(s) 99, 131, 743
Bpu10I CCTNAGC 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 144, 647
BsaXI ACNNNNNCTCC 4 cut(s) 101, 125, 131, 155
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 191, 648, 728
Bse1I ACTGG 2 cut(s) 459, 749
Bse3DI GCAATG 3 cut(s) 445, 489, 675
BseDI CCNNGG 2 cut(s) 144, 647
BseGI GGATG 4 cut(s) 31, 124, 584, 619
BseLI CCNNNNNNNGG 4 cut(s) 145, 191, 648, 728
BseMI GCAATG 3 cut(s) 445, 489, 675
BseMII CTCAG 2 cut(s) 118, 741
BseNI ACTGG 2 cut(s) 459, 749
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 148, 506
BseYI CCCAGC 1 cut(s) 370
BshFI GGCC 5 cut(s) 8, 320, 641, 680, 758
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 4 cut(s) 145, 191, 648, 728
BsmAI GTCTC 2 cut(s) 92, 102
BsnI GGCC 5 cut(s) 8, 320, 641, 680, 758
Bsp143I GATC 6 cut(s) 187, 355, 376, 391, 503, 708
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 3 cut(s) 35, 450, 675
BspANI GGCC 5 cut(s) 8, 320, 641, 680, 758
BspCNI CTCAG 2 cut(s) 117, 742
BspLI GGNNCC 2 cut(s) 196, 679
BspPI GGATC 2 cut(s) 511, 716
BsrDI GCAATG 3 cut(s) 445, 489, 675
BsrI ACTGG 2 cut(s) 459, 749
BssECI CCNNGG 2 cut(s) 144, 647
BssMI GATC 6 cut(s) 187, 355, 376, 391, 503, 708
BssT1I CCWWGG 2 cut(s) 144, 647
Bst4CI ACNGT 3 cut(s) 53, 480, 716
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 725
BstDEI CTNAG 3 cut(s) 84, 104, 750
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 31, 124, 584, 619
BstKTI GATC 6 cut(s) 190, 358, 379, 394, 506, 711
BstMAI GTCTC 2 cut(s) 92, 102
BstMBI GATC 6 cut(s) 187, 355, 376, 391, 503, 708
BstMWI GCNNNNNNNGC 3 cut(s) 43, 170, 435
BstNSI RCATGY 1 cut(s) 586
BstV1I GCAGC 2 cut(s) 148, 506
BstX2I RGATCY 2 cut(s) 391, 503
BstYI RGATCY 2 cut(s) 391, 503
BsuRI GGCC 5 cut(s) 8, 320, 641, 680, 758
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 4 cut(s) 31, 124, 584, 619
BtsIMutI CAGTG 1 cut(s) 452
Cfr13I GGNCC 3 cut(s) 362, 678, 756
Csp6I GTAC 1 cut(s) 367
CviAII CATG 4 cut(s) 145, 322, 583, 643
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 84, 104, 750
DpnI GATC 6 cut(s) 189, 357, 378, 393, 505, 710
DpnII GATC 6 cut(s) 187, 355, 376, 391, 503, 708
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 144, 647
Eco47I GGWCC 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 725
EcoT14I CCWWGG 2 cut(s) 144, 647
EcoT22I ATGCAT 1 cut(s) 584
ErhI CCWWGG 2 cut(s) 144, 647
FaeI CATG 4 cut(s) 148, 325, 586, 646
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FatI CATG 4 cut(s) 144, 321, 582, 642
FauI CCCGC 1 cut(s) 668
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 3 cut(s) 162, 450, 495
FokI GGATG 4 cut(s) 18, 111, 591, 606
Fsp4HI GCNGC 3 cut(s) 162, 450, 495
GluI GCNGC 3 cut(s) 162, 450, 495
GsaI CCCAGC 1 cut(s) 374
HaeIII GGCC 5 cut(s) 8, 320, 641, 680, 758
HapII CCGG 1 cut(s) 38
Hin1II CATG 4 cut(s) 148, 325, 586, 646
HindIII AAGCTT 3 cut(s) 21, 336, 403
HinfI GANTC 1 cut(s) 100
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 4 cut(s) 107, 463, 520, 738
Hpy188III TCNNGA 2 cut(s) 353, 395
Hpy8I GTNNAC 1 cut(s) 278
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 359, 392, 631
HpyCH4III ACNGT 3 cut(s) 53, 480, 716
HpyCH4IV ACGT 3 cut(s) 177, 215, 724
HpyCH4V TGCA 2 cut(s) 494, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 170, 435
HpyF3I CTNAG 3 cut(s) 84, 104, 750
HpySE526I ACGT 3 cut(s) 177, 215, 724
Hsp92II CATG 4 cut(s) 148, 325, 586, 646
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 6 cut(s) 187, 355, 376, 391, 503, 708
LmnI GCTCC 4 cut(s) 43, 200, 258, 314
LpnPI CCDG 8 cut(s) 51, 105, 198, 224, 365, 384, 440, 730
Lsp1109I GCAGC 2 cut(s) 148, 506
LweI GCATC 3 cut(s) 148, 569, 628
MaeII ACGT 3 cut(s) 177, 215, 724
MalI GATC 6 cut(s) 189, 357, 378, 393, 505, 710
MboI GATC 6 cut(s) 187, 355, 376, 391, 503, 708
MboII GAAGA 1 cut(s) 107
MflI RGATCY 2 cut(s) 391, 503
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 1 cut(s) 94
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 584
MscI TGGCCA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 43, 170, 435
NcoI CCATGG 1 cut(s) 144
NdeII GATC 6 cut(s) 187, 355, 376, 391, 503, 708
NlaIII CATG 4 cut(s) 148, 325, 586, 646
NlaIV GGNNCC 2 cut(s) 196, 679
NsiI ATGCAT 1 cut(s) 584
NspI RCATGY 1 cut(s) 586
PkrI GCNGC 3 cut(s) 163, 451, 496
PleI GAGTC 1 cut(s) 94
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 725
PspCI CACGTG 1 cut(s) 725
PspFI CCCAGC 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 196, 679
PspPI GGNCC 3 cut(s) 362, 678, 756
PsuI RGATCY 2 cut(s) 391, 503
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 326
SatI GCNGC 3 cut(s) 162, 450, 495
Sau3AI GATC 6 cut(s) 187, 355, 376, 391, 503, 708
Sau96I GGNCC 3 cut(s) 362, 678, 756
SchI GAGTC 1 cut(s) 94
SfaNI GCATC 3 cut(s) 148, 569, 628
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 1 cut(s) 524
SsiI CCGC 3 cut(s) 35, 450, 675
StyI CCWWGG 2 cut(s) 144, 647
TaaI ACNGT 3 cut(s) 53, 480, 716
TaiI ACGT 3 cut(s) 180, 218, 727
TaqI TCGA 2 cut(s) 352, 693
TaqII GACCGA 1 cut(s) 755
TasI AATT 1 cut(s) 524
TauI GCSGC 1 cut(s) 452
TscAI CASTG 1 cut(s) 459
TseI GCWGC 2 cut(s) 161, 494
TspDTI ATGAA 4 cut(s) 537, 578, 641, 650
TspGWI ACGGA 2 cut(s) 45, 354
TspRI CASTG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 362
XceI RCATGY 1 cut(s) 586
Zsp2I ATGCAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.