pycom11g22390

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011251
Physical Location & Seq
Forward (+)
25393804 .. 25397313
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGGAGGAGAGGGACATGGCTGCCACCAGTTTCTTAGCAGCGTCACTTGTAAGAAGAGCAGCTGTGGCTTTTGCTCTCTCGCATCCTCTTCTTCTGACAAGCAGCAAGCTTTCTTGCCGCAGGACCCTTATCTCCTTTCCTCTCACTCCTCGCTTAAGTTCTTCAGCTTCAGGAATATGCCATTTAGCTCAAGCTATAAAGGGGGATGTTGATGGTTTGCTTAAGGGAGTGGCAGACAAAACTGTTATTGAAGAAGTAAAACGTGTTCTCGAGATGGCTAGACGTGCATCATCGAGAAGGGAGGTTCTCCATACAAATTTTCTCACCCCTCCAGTGGTGAAGGAGTCAATGCTAGCATTGGAAAAGCTAGCTGATCTGAAAGCAGTTGTTCAAGGCGGATACCCGCAGGCTGAGCGGTGTCGGATTTCTGTAGGACATCCGGAAGTATTGACGAGTGATCCTGATGTACTTGCAGCATTGAGTATCACAGGAAACTTTGGGTTCCAGCCTTGTTCTCATGGTGATTTCCTAGGCGCAATTCTTGGTACAGGAATTGCTAGGGAGAAGCTTGGAGATATTATCTTGCAGGGGGAGAAAGGAGCTCAAGTCATTGTTGTTCCAGAACTTGTTGACTTCATTATATCATCACTCGACAAGGTTGGTAATGTGCCTGTATCTTTTTCTAGGATACCACTGATTTCTCTTGATTACGAACCTCCAAGGACTAAGTCGTTCAAAACCATAGAAGCATCAGTGAGAGTTGATGCTATAGCTAGTGCAGGATTTAAGTTATCACGGACAAAACTAGTTGATCTGATTCGTGATGGTGATGTGCGTGTGAACTGGACCCCTGTTACTAAAAATGGAGCTACACTCAAAACTGGTGATATTGTGTCGGTTAGAGGAAAAGGAAGACTAAAGATAGGAGAAATTAACCCTACGAAGAAGGGGAAATTTGCAGTTGAACTCATTCTTTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S4

Protein Analysis

328

Amino Acids

35.22

Weight (kDa)

9.49

Isoelectric Point (pI)

22.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YlmH_RBD PF17774 160 - 232 4.3e-13 Putative RNA-binding domain in YlmH
S4 PF01479 253 - 298 1.7e-07 S4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53120 AT1G53120
fragaria_vesca FvH4_3g19840
malus_domestica MD11G1248800.v1.1 MD11G1252400.v1.1
prunus_persica Prupe.4G180500_v2.0.a1
pyrus_communis pycom11g22390
rosa_chinensis RchiOBHm_Chr5g0033281
rosa_laevigata RLG00000033463
rosa_multiflora Rmu_sc0009715.1_g000003
rosa_roxburghii Rroxscaffold_1G00015440 Rroxscaffold_1G00046700
rosa_rugosa Rorug05G0139000 Rorug05G0139100 Rorug05G0250800
rosa_samantha Rh5AG230500 Rh5BG231400 Rh5CG259400 Rh5DG236600
rosa_wichuraiana Rw5G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 415
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 4 cut(s) 118, 396, 404, 415
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 2 cut(s) 316, 953
AcuI CTGAAG 2 cut(s) 147, 153
AfaI GTAC 2 cut(s) 468, 547
AfiI CCNNNNNNNGG 1 cut(s) 334
AflII CTTAAG 2 cut(s) 154, 221
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 4 cut(s) 251, 392, 736, 965
AhlI ACTAGT 1 cut(s) 805
AjiI CACGTC 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 604
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 439
ApeKI GCWGC 5 cut(s) 20, 38, 59, 102, 473
ApoI RAATTY 2 cut(s) 316, 953
Asp700I GAANNNNTTC 1 cut(s) 969
AspA2I CCTAGG 1 cut(s) 529
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 123, 846
AsuHPI GGTGA 5 cut(s) 316, 349, 533, 839, 896
AsuNHI GCTAGC 2 cut(s) 352, 367
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 123, 846
AvrII CCTAGG 1 cut(s) 529
BanII GRGCYC 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 919
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 5 cut(s) 7, 50, 71, 114, 485
BccI CCATC 3 cut(s) 206, 268, 818
BciVI GTATCC 2 cut(s) 392, 681
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 8 cut(s) 279, 353, 368, 530, 558, 684, 774, 806
BfmI CTRYAG 2 cut(s) 429, 768
BfrI CTTAAG 2 cut(s) 154, 221
BfuI GTATCC 2 cut(s) 392, 681
BisI GCNGC 6 cut(s) 21, 39, 60, 103, 118, 474
BlnI CCTAGG 1 cut(s) 529
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 6 cut(s) 22, 40, 61, 104, 119, 475
Bme18I GGWCC 2 cut(s) 123, 846
BmeT110I CYCGRG 1 cut(s) 269
BmgBI CACGTC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 123, 846
BmiI GGNNCC 3 cut(s) 125, 503, 848
BmsI GCATC 4 cut(s) 91, 296, 754, 758
BmtI GCTAGC 2 cut(s) 356, 371
BpiI GAAGAC 1 cut(s) 919
BplI GAGNNNNNCTC 2 cut(s) 858, 890
BpmI CTGGAG 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 174, 588
BsaJI CCNNGG 2 cut(s) 529, 719
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 4 cut(s) 27, 332, 848, 886
BseAI TCCGGA 1 cut(s) 439
BseDI CCNNGG 2 cut(s) 529, 719
BseGI GGATG 3 cut(s) 82, 211, 436
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 4 cut(s) 27, 332, 848, 886
BseRI GAGGAG 2 cut(s) 20, 138
BseXI GCAGC 5 cut(s) 7, 50, 71, 114, 485
BsgI GTGCAG 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 3 cut(s) 373, 457, 811
Bsp1720I GCTNAGC 1 cut(s) 411
BspACI CCGC 4 cut(s) 118, 396, 404, 415
BspCNI CTCAG 1 cut(s) 403
BspEI TCCGGA 1 cut(s) 439
BspLI GGNNCC 3 cut(s) 125, 503, 848
BspOI GCTAGC 2 cut(s) 356, 371
BspPI GGATC 1 cut(s) 452
BspQI GCTCTTC 1 cut(s) 49
BspTI CTTAAG 2 cut(s) 154, 221
BsrBI CCGCTC 1 cut(s) 415
BsrI ACTGG 4 cut(s) 27, 332, 848, 886
BssECI CCNNGG 2 cut(s) 529, 719
BssMI GATC 3 cut(s) 373, 457, 811
BssT1I CCWWGG 2 cut(s) 529, 719
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 49, 93
BstAFI CTTAAG 2 cut(s) 154, 221
BstC8I GCNNGC 4 cut(s) 107, 354, 369, 408
BstDEI CTNAG 3 cut(s) 34, 411, 726
BstF5I GGATG 3 cut(s) 82, 211, 436
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 3 cut(s) 376, 460, 814
BstMBI GATC 3 cut(s) 373, 457, 811
BstMWI GCNNNNNNNGC 3 cut(s) 65, 284, 412
BstSFI CTRYAG 2 cut(s) 429, 768
BstV1I GCAGC 5 cut(s) 7, 50, 71, 114, 485
BstV2I GAAGAC 1 cut(s) 919
BsuI GTATCC 2 cut(s) 392, 681
BtrI CACGTC 1 cut(s) 284
BtsCI GGATG 3 cut(s) 82, 211, 436
BtsIMutI CAGTG 3 cut(s) 339, 692, 759
Cac8I GCNNGC 4 cut(s) 107, 354, 369, 408
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 123, 846
CseI GACGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 467, 546
CviAII CATG 2 cut(s) 16, 518
CviQI GTAC 2 cut(s) 467, 546
DdeI CTNAG 3 cut(s) 34, 411, 726
DpnI GATC 3 cut(s) 375, 459, 813
DpnII GATC 3 cut(s) 373, 457, 811
Eam1104I CTCTTC 2 cut(s) 49, 93
EarI CTCTTC 2 cut(s) 49, 93
EciI GGCGGA 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 602
Eco130I CCWWGG 2 cut(s) 529, 719
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 123, 846
Eco53kI GAGCTC 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 147, 153
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 602
EcoO109I RGGNCCY 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 529, 719
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 2 cut(s) 529, 719
FaeI CATG 2 cut(s) 19, 521
FaiI YATR 8 cut(s) 17, 178, 197, 312, 519, 641, 743, 770
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 15, 517
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 6 cut(s) 21, 39, 60, 103, 118, 474
FokI GGATG 3 cut(s) 69, 218, 423
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 6 cut(s) 21, 39, 60, 103, 118, 474
FspBI CTAG 8 cut(s) 279, 353, 368, 530, 558, 684, 774, 806
GlaI GCGC 1 cut(s) 535
GluI GCNGC 6 cut(s) 21, 39, 60, 103, 118, 474
GsuI CTGGAG 1 cut(s) 315
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 536
Hin1II CATG 2 cut(s) 19, 521
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 2 cut(s) 107, 566
HinfI GANTC 2 cut(s) 344, 817
HpaII CCGG 1 cut(s) 440
HphI GGTGA 5 cut(s) 316, 349, 533, 839, 896
Hpy166II GTNNAC 2 cut(s) 631, 841
Hpy188I TCNGA 4 cut(s) 96, 378, 423, 816
Hpy188III TCNNGA 9 cut(s) 171, 269, 271, 294, 440, 461, 620, 704, 821
Hpy8I GTNNAC 2 cut(s) 631, 841
HpyAV CCTTC 3 cut(s) 291, 334, 940
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 2 cut(s) 262, 283
HpyCH4V TGCA 5 cut(s) 287, 473, 586, 779, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 284, 412
HpyF3I CTNAG 3 cut(s) 34, 411, 726
HpySE526I ACGT 2 cut(s) 262, 283
Hsp92II CATG 2 cut(s) 19, 521
HspAI GCGC 1 cut(s) 534
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 3 cut(s) 373, 457, 811
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 599, 866
Lsp1109I GCAGC 5 cut(s) 7, 50, 71, 114, 485
LweI GCATC 4 cut(s) 91, 296, 754, 758
MaeI CTAG 8 cut(s) 279, 353, 368, 530, 558, 684, 774, 806
MaeII ACGT 2 cut(s) 262, 283
MaeIII GTNAC 2 cut(s) 42, 853
MalI GATC 3 cut(s) 375, 459, 813
MbiI CCGCTC 1 cut(s) 415
MboI GATC 3 cut(s) 373, 457, 811
MboII GAAGA 7 cut(s) 66, 80, 83, 153, 263, 924, 955
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 5 cut(s) 316, 537, 552, 930, 953
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 8 cut(s) 3, 96, 150, 159, 295, 339, 726, 896
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 969
MseI TTAA 4 cut(s) 155, 222, 786, 933
MspA1I CMGCKG 1 cut(s) 62
MspCI CTTAAG 2 cut(s) 154, 221
MspI CCGG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 65, 284, 412
NdeII GATC 3 cut(s) 373, 457, 811
NheI GCTAGC 2 cut(s) 352, 367
NlaIII CATG 2 cut(s) 19, 521
NlaIV GGNNCC 3 cut(s) 125, 503, 848
NmuCI GTSAC 1 cut(s) 42
PaeR7I CTCGAG 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 1 cut(s) 817
PflFI GACNNNGTC 1 cut(s) 727
PkrI GCNGC 6 cut(s) 22, 40, 61, 104, 119, 475
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 125, 503, 848
PspPI GGNCC 2 cut(s) 123, 846
PspPPI RGGWCCY 1 cut(s) 123
PsrI GAACNNNNNNTAC 2 cut(s) 249, 281
PsyI GACNNNGTC 1 cut(s) 727
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 468, 547
RsaNI GTAC 2 cut(s) 467, 546
SacI GAGCTC 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 4 cut(s) 155, 222, 786, 933
SatI GCNGC 6 cut(s) 21, 39, 60, 103, 118, 474
Sau3AI GATC 3 cut(s) 373, 457, 811
Sau96I GGNCC 2 cut(s) 123, 846
SchI GAGTC 1 cut(s) 353
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 4 cut(s) 91, 296, 754, 758
SfcI CTRYAG 2 cut(s) 429, 768
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 2 cut(s) 123, 846
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 5 cut(s) 154, 189, 221, 269, 603
SmoI CTYRAG 5 cut(s) 154, 189, 221, 269, 603
SpeI ACTAGT 1 cut(s) 805
Sse9I AATT 5 cut(s) 316, 537, 552, 930, 953
SsiI CCGC 4 cut(s) 118, 396, 404, 415
SspMI CTAG 8 cut(s) 279, 353, 368, 530, 558, 684, 774, 806
SstI GAGCTC 1 cut(s) 604
StyI CCWWGG 2 cut(s) 529, 719
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 2 cut(s) 265, 286
TaqI TCGA 3 cut(s) 270, 293, 651
TasI AATT 5 cut(s) 316, 537, 552, 930, 953
TatI WGTACW 1 cut(s) 466
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 817
Tru1I TTAA 4 cut(s) 155, 222, 786, 933
Tru9I TTAA 4 cut(s) 155, 222, 786, 933
TscAI CASTG 3 cut(s) 339, 699, 759
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 5 cut(s) 20, 38, 59, 102, 473
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 625
TspGWI ACGGA 1 cut(s) 811
TspRI CASTG 3 cut(s) 339, 699, 759
Tth111I GACNNNGTC 1 cut(s) 727
Vha464I CTTAAG 2 cut(s) 154, 221
VpaK11BI GGWCC 2 cut(s) 123, 846
XapI RAATTY 2 cut(s) 316, 953
XhoI CTCGAG 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 8 cut(s) 279, 353, 368, 530, 558, 684, 774, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.