Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015841

Physical Location & Seq

Genomic Coordinates Reverse (-)

28322796 .. 28323457

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTTTCGACTGTTTTTATAGAAGTTTTTTTTGAAGCCTGTATTCCGAGGCACCTGCAACGAGACCCGAGAGATCAACGCCACAAATATTTCAAATTCGTCAAAACTTTTCAACAGAAGAAAAAGAAACCGGGGATGGGAAAAGCGTCGGGAGCGAAGCAAGCGGCGGTGGTGTTCGGAGCCCTAGCCGTCGGGTGGCTGGCCATAGAGCTCGCCTTCAAGCCCATCCTCGACAAAGCCCGCTCCGCCATGAACAAGTGCGACCAGGCCCGCGATCCCGACGAAGACGATGCCGTCGAGGCTGCCGAGGCCACCGTTAATGCTGCCCAGGCCACCGTTGAAGCTGCCCAGGCCACCGTTAAAGCTGCAGAGATCGCCGTCGACGAAGCCTCAGCACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.6

Weight (kDa)

7.76

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52420
fragaria_vesca	FvH4_2g23750
malus_domestica	MD03G1267100.v1.1 MD11G1287600.v1.1
prunus_persica	Prupe.8G242800_v2.0.a1
pyrus_communis	pycom11g25500
rosa_chinensis	RchiOBHm_Chr6g0291241
rosa_multiflora	Rmu_sc0013203.1_g000028
rosa_roxburghii	Rroxscaffold_7G00176210
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG329700 Rh6BG336900 Rh6CG343200 Rh6DG330300
rosa_wichuraiana	Rw6G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	63
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	273
AciI	CCGC	5 cut(s)	164, 167, 241, 246, 271
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	137, 195
AgsI	TTSAA	5 cut(s)	35, 94, 113, 220, 341
AjnI	CCWGG	3 cut(s)	264, 327, 348
AluBI	AGCT	3 cut(s)	211, 344, 365
AluI	AGCT	3 cut(s)	211, 344, 365
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	5 cut(s)	201, 267, 309, 330, 351
ApeKI	GCWGC	4 cut(s)	302, 323, 344, 365
ApoI	RAATTY	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	132
AvaI	CYCGRG	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	51
BanII	GRGCYC	2 cut(s)	184, 213
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	391
BbvI	GCAGC	4 cut(s)	289, 310, 331, 352
BccI	CCATC	2 cut(s)	130, 233
BceAI	ACGGC	3 cut(s)	173, 278, 362
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 272, 306
BciT130I	CCWGG	3 cut(s)	266, 329, 350
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	5 cut(s)	165, 303, 324, 345, 366
BlsI	GCNGC	5 cut(s)	166, 304, 325, 346, 367
Bme1390I	CCNGG	4 cut(s)	132, 266, 329, 350
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	53, 181
BmrFI	CCNGG	4 cut(s)	132, 266, 329, 350
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	5 cut(s)	47, 131, 306, 327, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 195
BseBI	CCWGG	3 cut(s)	266, 329, 350
BseDI	CCNNGG	5 cut(s)	47, 131, 306, 327, 348
BseGI	GGATG	2 cut(s)	141, 225
BseLI	CCNNNNNNNGG	2 cut(s)	137, 195
BseMII	CTCAG	1 cut(s)	405
BseXI	GCAGC	4 cut(s)	289, 310, 331, 352
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	5 cut(s)	203, 269, 311, 332, 353
BshNI	GGYRCC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	137, 195
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	5 cut(s)	203, 269, 311, 332, 353
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	184, 213
Bsp143I	GATC	3 cut(s)	73, 274, 372
BspACI	CCGC	5 cut(s)	164, 167, 241, 246, 271
BspANI	GGCC	5 cut(s)	203, 269, 311, 332, 353
BspCNI	CTCAG	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	53, 181
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	243
BssECI	CCNNGG	5 cut(s)	47, 131, 306, 327, 348
BssMI	GATC	3 cut(s)	73, 274, 372
Bst2UI	CCWGG	3 cut(s)	266, 329, 350
Bst4CI	ACNGT	4 cut(s)	13, 316, 337, 358
BstC8I	GCNNGC	5 cut(s)	162, 201, 213, 241, 271
BstDEI	CTNAG	1 cut(s)	391
BstF5I	GGATG	2 cut(s)	141, 225
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	3 cut(s)	76, 277, 375
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	73, 274, 372
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 161, 245, 299, 308, 329, 350, 374
BstNI	CCWGG	3 cut(s)	266, 329, 350
BstSCI	CCNGG	4 cut(s)	130, 264, 327, 348
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	4 cut(s)	289, 310, 331, 352
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	5 cut(s)	203, 269, 311, 332, 353
BtsCI	GGATG	2 cut(s)	141, 225
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	5 cut(s)	162, 201, 213, 241, 271
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	135
CviAII	CATG	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	3 cut(s)	75, 276, 374
DpnII	GATC	3 cut(s)	73, 274, 372
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	235
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	184, 213
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	3 cut(s)	264, 327, 348
EcoT38I	GRGCYC	2 cut(s)	184, 213
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	20, 206, 251
FatI	CATG	1 cut(s)	249
FauI	CCCGC	2 cut(s)	248, 278
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	165, 303, 324, 345, 366
FokI	GGATG	2 cut(s)	148, 212
FriOI	GRGCYC	2 cut(s)	184, 213
Fsp4HI	GCNGC	5 cut(s)	165, 303, 324, 345, 366
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	5 cut(s)	165, 303, 324, 345, 366
HaeIII	GGCC	5 cut(s)	203, 269, 311, 332, 353
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	48, 179
Hpy188III	TCNNGA	2 cut(s)	150, 278
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	6 cut(s)	151, 194, 284, 299, 383, 386
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	4 cut(s)	13, 316, 337, 358
HpyCH4V	TGCA	2 cut(s)	58, 368
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 161, 245, 299, 308, 329, 350, 374
HpyF3I	CTNAG	1 cut(s)	391
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	73, 274, 372
LmnI	GCTCC	3 cut(s)	152, 179, 248
Lsp1109I	GCAGC	4 cut(s)	289, 310, 331, 352
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	185
MalI	GATC	3 cut(s)	75, 276, 374
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	3 cut(s)	73, 274, 372
MboII	GAAGA	2 cut(s)	130, 296
MhlI	GDGCHC	2 cut(s)	184, 213
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	1 cut(s)	95
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	5 cut(s)	42, 239, 292, 301, 400
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	2 cut(s)	318, 360
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	4 cut(s)	132, 266, 329, 350
MvaI	CCWGG	3 cut(s)	266, 329, 350
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	8 cut(s)	152, 161, 245, 299, 308, 329, 350, 374
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	73, 274, 372
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	53, 181
NmeAIII	GCCGAG	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	3 cut(s)	294, 303, 381
PkrI	GCNGC	5 cut(s)	166, 304, 325, 346, 367
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	3 cut(s)	264, 327, 348
PspGI	CCWGG	3 cut(s)	264, 327, 348
PspN4I	GGNNCC	2 cut(s)	53, 181
PspPI	GGNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	318, 360
SatI	GCNGC	5 cut(s)	165, 303, 324, 345, 366
Sau3AI	GATC	3 cut(s)	73, 274, 372
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	4 cut(s)	132, 266, 329, 350
SduI	GDGCHC	2 cut(s)	184, 213
SetI	ASST	5 cut(s)	57, 213, 346, 367, 400
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	366
SgrDI	CGTCGACG	1 cut(s)	380
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	5 cut(s)	164, 167, 241, 246, 271
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	4 cut(s)	130, 264, 327, 348
TaaI	ACNGT	4 cut(s)	13, 316, 337, 358
TaqI	TCGA	4 cut(s)	8, 231, 297, 381
TasI	AATT	1 cut(s)	95
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	318, 360
Tru9I	TTAA	2 cut(s)	318, 360
TseI	GCWGC	4 cut(s)	302, 323, 344, 365
TspDTI	ATGAA	1 cut(s)	266
XapI	RAATTY	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.