pycom12g00130

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0019590
Physical Location & Seq
Reverse (-)
223490 .. 224083
594 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g00130.2

Sequence Viewer

Length: 534 bp
ATGTGCAGAAAAGAAATTTCAAAAAGAGCGATCGATCCCAACCACGATTTGCTGAGGCGAGGCCCATTCATTATTTTCCTTGGAAGGGAGGGCGGGGAGTGTCATTTTACAGCCCCGTGGGCAAGAAGCACCCAGCCCAACCACAACGGTATGCAGAGAAAGCACGTTTGTGCTGATGCCTGGTGCGACGACTCCGCCTCCTCCAAATATGCTCCAACTCCACCTTCAGCTTCGTGCTGGATTCCCCCGCACCCATCCATTAATTCAAACCCAATTGCCACTACCACCACAACTCCAATTGCTAGAATAGTCGACCCCTTTTTCTCTCCAACTGATCCCAACAATATTATTCCCAATCTCACTCGCATTCACAACTGCAGCTTCGTCAATGCTAAAACAACCTTCAAATTCAAATGCCGCTGCTGCCGCTGCTGCTGCATTCACAACATTACTCCTTCTACTTCAACTGCAGCAGCCACTTTCACCAGTAATAGTAATAGTAATGATTTCCATCAACAAAACAAGAGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

9.02

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33260 AT2G33260
fragaria_vesca FvH4_2g12801
malus_domestica MD14G1001300.v1.1
prunus_persica Prupe.7G001500_v2.0.a1
pyrus_communis pycom12g00130 pycom49g00080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AciI CCGC 5 cut(s) 93, 195, 248, 418, 427
AclWI GGATC 2 cut(s) 29, 329
AcsI RAATTY 2 cut(s) 15, 407
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 5 cut(s) 21, 267, 406, 412, 465
AjnI CCWGG 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 3 cut(s) 230, 381, 528
AluI AGCT 3 cut(s) 230, 381, 528
AlwI GGATC 2 cut(s) 29, 329
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 8 cut(s) 378, 420, 423, 429, 432, 435, 470, 473
ApoI RAATTY 2 cut(s) 15, 407
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 475
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 8 cut(s) 390, 407, 410, 416, 419, 422, 482, 485
BccI CCATC 2 cut(s) 262, 519
BciT130I CCWGG 1 cut(s) 181
BfaI CTAG 2 cut(s) 303, 532
BfmI CTRYAG 2 cut(s) 376, 468
BglI GCCNNNNNGGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 79, 116
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 79, 116
BseGI GGATG 1 cut(s) 254
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 8 cut(s) 390, 407, 410, 416, 419, 422, 482, 485
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 63
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 85
BsmI GAATGC 2 cut(s) 366, 438
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 30, 34, 334
BspACI CCGC 5 cut(s) 93, 195, 248, 418, 427
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 45
BspDI ATCGAT 1 cut(s) 33
BspMAI CTGCAG 2 cut(s) 380, 472
BspPI GGATC 2 cut(s) 29, 329
BsrI ACTGG 1 cut(s) 486
BssECI CCNNGG 2 cut(s) 79, 116
BssMI GATC 3 cut(s) 30, 34, 334
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 3 cut(s) 33, 37, 337
BstMBI GATC 3 cut(s) 30, 34, 334
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 7 cut(s) 119, 160, 423, 426, 429, 432, 435
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 2 cut(s) 376, 468
BstV1I GCAGC 8 cut(s) 390, 407, 410, 416, 419, 422, 482, 485
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 33
CviJI RGCY 7 cut(s) 63, 113, 136, 230, 381, 476, 528
CviKI_1 RGCY 7 cut(s) 63, 113, 136, 230, 381, 476, 528
DdeI CTNAG 1 cut(s) 53
DpnI GATC 3 cut(s) 32, 36, 336
DpnII GATC 3 cut(s) 30, 34, 334
EciI GGCGGA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaiI YATR 2 cut(s) 152, 210
FauI CCCGC 2 cut(s) 86, 255
FblI GTMKAC 1 cut(s) 312
FokI GGATG 1 cut(s) 241
FspBI CTAG 2 cut(s) 303, 532
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 191, 241
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 1 cut(s) 313
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 78, 234, 412, 465
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 5 cut(s) 6, 154, 378, 438, 470
HpyF10VI GCNNNNNNNGC 7 cut(s) 119, 160, 423, 426, 429, 432, 435
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 165
Kzo9I GATC 3 cut(s) 30, 34, 334
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 146, 166, 193, 223, 499
Lsp1109I GCAGC 8 cut(s) 390, 407, 410, 416, 419, 422, 482, 485
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 303, 532
MaeII ACGT 1 cut(s) 165
MalI GATC 3 cut(s) 32, 36, 336
MboI GATC 3 cut(s) 30, 34, 334
MfeI CAATTG 2 cut(s) 273, 297
MluCI AATT 5 cut(s) 15, 262, 273, 297, 407
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 239, 353
MnlI CCTC 5 cut(s) 48, 53, 82, 208, 211
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 2 cut(s) 420, 429
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 2 cut(s) 273, 297
Mva1269I GAATGC 2 cut(s) 366, 438
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 7 cut(s) 119, 160, 423, 426, 429, 432, 435
NdeII GATC 3 cut(s) 30, 34, 334
OliI CACNNNNGTG 1 cut(s) 168
PctI GAATGC 2 cut(s) 366, 438
PfeI GAWTC 1 cut(s) 241
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 179
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 2 cut(s) 380, 472
PvuI CGATCG 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 168
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 261
Sau3AI GATC 3 cut(s) 30, 34, 334
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 181
SetI ASST 6 cut(s) 168, 226, 232, 383, 404, 530
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 2 cut(s) 376, 468
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 5 cut(s) 15, 262, 273, 297, 407
SsiI CCGC 5 cut(s) 93, 195, 248, 418, 427
SspI AATATT 1 cut(s) 346
SspMI CTAG 2 cut(s) 303, 532
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 33, 312
TasI AATT 5 cut(s) 15, 262, 273, 297, 407
TauI GCSGC 2 cut(s) 420, 429
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseI GCWGC 8 cut(s) 378, 420, 423, 429, 432, 435, 470, 473
TspDTI ATGAA 1 cut(s) 58
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 2 cut(s) 15, 407
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 2 cut(s) 303, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.