pycom49g00080

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_49
OG0019590
Physical Location & Seq
Reverse (-)
128957 .. 130454
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom49g00080.2

Sequence Viewer

Length: 1287 bp
ATGCCTGGTGCGACTCCAAATATGCTCCAACTCCACCTTCAGCTTCGTGCTGGACTTCCTCCCCACCCATCCATTAATACAAACCCAATTGCTACTACCACCACAACTCCAATTGCAAGAATAGTCGATCCCCTTCTCACTCCAACTGATCCCAACACCACTAATCCCAATCTCACTCGCATTCACAACTGCAACTTCATCAATGCTAAAACCACCTTCAAATTCAAATGCCGCCGCCGCCGCATTCACAACGTTACTCCTTCTTCTACTTCAACTGCAGCAGCCAATAGTAATGATCTGGGGTGCTGTCACTCTGATCATCGGCACTGCCGTTGGTCCCGGCATGCTCGGTTTGCCCGCTGCTACCATCCGCTCCGGCCCCCTCCCCTCCACCCTTGCCATCCTCCTCCGTTGGCTCTATGTCATCTCCTCCACGCCCTTCAAGAGGTCAGCTTTACCGCCCTTGCTTCCAAAGCATTCGGTGGTCGTTTTGGCGCATTTGTTGCTGTCGTCTATGCCTCTTTGAGCTTTGCCTTGTTGGTCGCTTGCGTCTCCGGCATCGGCTCAATTGTCTCCCAGTGCTTTCCCCGCATCAATCTTGTACTCGCTCACGCTTTATTTCCCCTTGCGGCCGGATCGCTCATTCTTATGTTTCCTTGCAATGCCATTGATGCTGCAAACCGTGTTCTGTGCTTGCTCATGCTTTTCTCCATAACTTCCCTCGTGGCGTCTTTCCTCCATTTTGCCCGCCTTTCCGGTCCCCGTCCTTACACTCGGATTCCATGTCATCACCCCTTTCATTTGCAAGATTGCTGGCAACACTGTAGCCGACGCTCGCAAGGCCATACTCATTGGTGGGGCTGTTCCATTGACCATGGTCTTGTCATGGAATTTGATTGTGTTGGGGCTTTCTGGATCCGGAACCAACACCGCAGCAGCAGCAGCAGCAGCCGGAGACCCTATATCCCTTCTGCTTTCCTTGGGTTTGCTGTTTATTCAAAAATGAGGCATGATGATAATAATATTGGAAATGCAGGGAGGGCTTCTTTTACCACCGGTTCAGGTTCAGGGCGTTGTATTGATGCTTCTGATTCTAAACCGGGATCGAGCATTAATATGATAGTAATGCCGCTGATGCTCGGCGTTCCAGTGCTCATAGCATCTTTCTTTCCCTCCACCTTTTCCAGAGCTCTTGATTTCGCCGGACTTTATGCAAACTGTTTTCTGTTTGGCATCCTCCCTCCAGCAATGGCTTACATACACCAATCGAGGAGGAAATCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

429

Amino Acids

47.1

Weight (kDa)

9.88

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33260 AT2G33260
fragaria_vesca FvH4_2g12801
malus_domestica MD14G1001300.v1.1
prunus_persica Prupe.7G001500_v2.0.a1
pyrus_communis pycom12g00130 pycom49g00080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 373
AccIII TCCGGA 1 cut(s) 918
AclI AACGTT 1 cut(s) 252
AclWI GGATC 6 cut(s) 122, 143, 643, 910, 923, 1111
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 2 cut(s) 221, 890
AcuI CTGAAG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 728
AfaI GTAC 1 cut(s) 603
AfiI CCNNNNNNNGG 1 cut(s) 445
AgeI ACCGGT 1 cut(s) 1055
AgsI TTSAA 5 cut(s) 220, 226, 273, 443, 999
AjnI CCWGG 1 cut(s) 4
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 4 cut(s) 43, 453, 528, 1190
AluI AGCT 4 cut(s) 43, 453, 528, 1190
Alw21I GWGCWC 2 cut(s) 1155, 1192
Alw26I GTCTC 3 cut(s) 556, 577, 949
AlwI GGATC 6 cut(s) 122, 143, 643, 910, 923, 1111
Aor13HI TCCGGA 1 cut(s) 918
AoxI GGCC 3 cut(s) 377, 630, 841
ApoI RAATTY 2 cut(s) 221, 890
AseI ATTAAT 2 cut(s) 75, 1113
AsiGI ACCGGT 1 cut(s) 1055
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 3 cut(s) 336, 378, 758
AsuC2I CCSGG 2 cut(s) 340, 1101
AsuHPI GGTGA 1 cut(s) 782
AvaII GGWCC 2 cut(s) 336, 758
BamHI GGATCC 1 cut(s) 915
BanII GRGCYC 1 cut(s) 1192
BarI GAAGNNNNNNTAC 2 cut(s) 1069, 1101
BauI CACGAG 1 cut(s) 722
Bbv12I GWGCWC 2 cut(s) 1155, 1192
BccI CCATC 3 cut(s) 76, 375, 408
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 1 cut(s) 6
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 2 cut(s) 340, 1101
BcoDI GTCTC 3 cut(s) 556, 577, 949
BfmI CTRYAG 2 cut(s) 276, 823
Bme1390I CCNGG 3 cut(s) 6, 340, 1101
Bme18I GGWCC 2 cut(s) 336, 758
BmgT120I GGNCC 3 cut(s) 336, 378, 758
BmiI GGNNCC 5 cut(s) 338, 380, 760, 917, 923
BmrFI CCNGG 3 cut(s) 6, 340, 1101
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 7 cut(s) 567, 600, 661, 1072, 1125, 1169, 1242
BmuI ACTGGG 1 cut(s) 571
BoxI GACNNNNGTC 1 cut(s) 876
BpmI CTGGAG 1 cut(s) 1227
BpuMI CCSGG 2 cut(s) 340, 1101
BsaHI GRCGYC 1 cut(s) 728
BsaI GGTCTC 1 cut(s) 949
BsaJI CCNNGG 2 cut(s) 874, 979
BsaWI WCCGGW 3 cut(s) 755, 918, 1055
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse118I RCCGGY 1 cut(s) 1055
Bse1I ACTGG 2 cut(s) 577, 1148
Bse3DI GCAATG 2 cut(s) 667, 1254
BseAI TCCGGA 1 cut(s) 918
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 874, 979
BseGI GGATG 4 cut(s) 68, 367, 400, 1233
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 2 cut(s) 667, 1254
BseNI ACTGG 2 cut(s) 577, 1148
BseRI GAGGAG 3 cut(s) 396, 419, 1285
BseX3I CGGCCG 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 633
BshFI GGCC 3 cut(s) 379, 632, 843
BshTI ACCGGT 1 cut(s) 1055
BsiEI CGRYCG 1 cut(s) 633
BsiHKAI GWGCWC 2 cut(s) 1155, 1192
BslFI GGGAC 2 cut(s) 322, 744
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 3 cut(s) 556, 577, 949
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 2 cut(s) 322, 744
BsmI GAATGC 3 cut(s) 180, 243, 476
BsnI GGCC 3 cut(s) 379, 632, 843
Bso31I GGTCTC 1 cut(s) 949
Bsp1286I GDGCHC 2 cut(s) 1155, 1192
Bsp13I TCCGGA 1 cut(s) 918
Bsp143I GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
Bsp19I CCATGG 1 cut(s) 874
BspANI GGCC 3 cut(s) 379, 632, 843
BspEI TCCGGA 1 cut(s) 918
BspLI GGNNCC 5 cut(s) 338, 380, 760, 917, 923
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 6 cut(s) 122, 143, 643, 910, 923, 1111
BspTNI GGTCTC 1 cut(s) 949
BsrBI CCGCTC 1 cut(s) 373
BsrDI GCAATG 2 cut(s) 667, 1254
BsrFI RCCGGY 1 cut(s) 1055
BsrI ACTGG 2 cut(s) 577, 1148
BssAI RCCGGY 1 cut(s) 1055
BssECI CCNNGG 2 cut(s) 874, 979
BssMI GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
BssNI GRCGYC 1 cut(s) 728
BssSI CACGAG 1 cut(s) 722
BssT1I CCWWGG 2 cut(s) 874, 979
Bst2BI CACGAG 1 cut(s) 722
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 3 cut(s) 683, 824, 1220
BstACI GRCGYC 1 cut(s) 728
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 7 cut(s) 345, 358, 547, 695, 748, 815, 836
BstDSI CCRYGG 1 cut(s) 874
BstENI CCTNNNNNAGG 1 cut(s) 443
BstF5I GGATG 4 cut(s) 68, 367, 400, 1233
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 7 cut(s) 130, 151, 298, 319, 638, 918, 1106
BstMAI GTCTC 3 cut(s) 556, 577, 949
BstMBI GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
BstMCI CGRYCG 1 cut(s) 633
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 347
BstPAI GACNNNNGTC 1 cut(s) 876
BstSCI CCNGG 3 cut(s) 4, 338, 1099
BstSFI CTRYAG 2 cut(s) 276, 823
BstX2I RGATCY 1 cut(s) 915
BstYI RGATCY 1 cut(s) 915
BstZI CGGCCG 1 cut(s) 630
BsuRI GGCC 3 cut(s) 379, 632, 843
BtgI CCRYGG 1 cut(s) 874
BtsCI GGATG 4 cut(s) 68, 367, 400, 1233
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 4 cut(s) 325, 584, 820, 1155
Cac8I GCNNGC 7 cut(s) 345, 358, 547, 695, 748, 815, 836
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 1055
Cfr13I GGNCC 3 cut(s) 336, 378, 758
CseI GACGC 3 cut(s) 538, 717, 840
Csp6I GTAC 1 cut(s) 602
CspAI ACCGGT 1 cut(s) 1055
CviAII CATG 6 cut(s) 344, 700, 783, 875, 886, 1010
CviQI GTAC 1 cut(s) 602
DpnI GATC 7 cut(s) 129, 150, 297, 318, 637, 917, 1105
DpnII GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
EaeI YGGCCR 1 cut(s) 630
EagI CGGCCG 1 cut(s) 630
Ecl136II GAGCTC 1 cut(s) 1190
EclXI CGGCCG 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 874, 979
Eco24I GRGCYC 1 cut(s) 1192
Eco31I GGTCTC 1 cut(s) 949
Eco47I GGWCC 2 cut(s) 336, 758
Eco52I CGGCCG 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 1190
Eco57I CTGAAG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 1190
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 4
EcoT14I CCWWGG 2 cut(s) 874, 979
EcoT38I GRGCYC 1 cut(s) 1192
ErhI CCWWGG 2 cut(s) 874, 979
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 6 cut(s) 347, 703, 786, 878, 889, 1013
FaqI GGGAC 2 cut(s) 322, 744
FatI CATG 6 cut(s) 343, 699, 782, 874, 885, 1009
FauI CCCGC 3 cut(s) 365, 596, 755
FbaI TGATCA 1 cut(s) 316
FokI GGATG 4 cut(s) 55, 354, 387, 1220
FriOI GRGCYC 1 cut(s) 1192
GlaI GCGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 1227
HaeIII GGCC 3 cut(s) 379, 632, 843
HgaI GACGC 3 cut(s) 538, 717, 840
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 728
Hin1II CATG 6 cut(s) 347, 703, 786, 878, 889, 1013
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HinfI GANTC 3 cut(s) 13, 778, 1091
HphI GGTGA 1 cut(s) 782
Hpy188I TCNGA 3 cut(s) 316, 777, 1090
Hpy188III TCNNGA 5 cut(s) 443, 913, 919, 1185, 1193
Hpy99I CGWCG 1 cut(s) 834
HpyAV CCTTC 6 cut(s) 47, 143, 226, 270, 449, 978
HpyCH4III ACNGT 3 cut(s) 683, 824, 1220
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 8 cut(s) 116, 192, 278, 660, 677, 805, 1034, 1214
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 728
Hsp92II CATG 6 cut(s) 347, 703, 786, 878, 889, 1013
HspAI GCGC 1 cut(s) 495
Kpn2I TCCGGA 1 cut(s) 918
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
LmnI GCTCC 2 cut(s) 30, 378
LweI GCATC 7 cut(s) 567, 600, 661, 1072, 1125, 1169, 1242
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 253, 308
MalI GATC 7 cut(s) 129, 150, 297, 318, 637, 917, 1105
MbiI CCGCTC 1 cut(s) 373
MboI GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
MboII GAAGA 1 cut(s) 255
MfeI CAATTG 3 cut(s) 87, 111, 567
MflI RGATCY 1 cut(s) 915
MhlI GDGCHC 2 cut(s) 1155, 1192
MluCI AATT 5 cut(s) 87, 111, 221, 567, 890
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 2 cut(s) 52, 167
MroI TCCGGA 1 cut(s) 918
MseI TTAA 2 cut(s) 75, 1113
MslI CAYNNNNRTG 2 cut(s) 647, 1115
MspA1I CMGCKG 2 cut(s) 360, 1132
MspR9I CCNGG 3 cut(s) 6, 340, 1101
MunI CAATTG 3 cut(s) 87, 111, 567
Mva1269I GAATGC 3 cut(s) 180, 243, 476
MvaI CCWGG 1 cut(s) 6
NciI CCSGG 2 cut(s) 340, 1101
NcoI CCATGG 1 cut(s) 874
NdeII GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
NlaIII CATG 6 cut(s) 347, 703, 786, 878, 889, 1013
NlaIV GGNNCC 5 cut(s) 338, 380, 760, 917, 923
NmeAIII GCCGAG 1 cut(s) 1119
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 347
PaeI GCATGC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PctI GAATGC 3 cut(s) 180, 243, 476
PfeI GAWTC 2 cut(s) 778, 1091
PinAI ACCGGT 1 cut(s) 1055
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PshAI GACNNNNGTC 1 cut(s) 876
PshBI ATTAAT 2 cut(s) 75, 1113
Psp124BI GAGCTC 1 cut(s) 1192
Psp1406I AACGTT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 5 cut(s) 338, 380, 760, 917, 923
PspPI GGNCC 3 cut(s) 336, 378, 758
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 915
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
RseI CAYNNNNRTG 2 cut(s) 647, 1115
SacI GAGCTC 1 cut(s) 1192
SaqAI TTAA 2 cut(s) 75, 1113
Sau3AI GATC 7 cut(s) 127, 148, 295, 316, 635, 915, 1103
Sau96I GGNCC 3 cut(s) 336, 378, 758
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 3 cut(s) 6, 340, 1101
SduI GDGCHC 2 cut(s) 1155, 1192
SfaNI GCATC 7 cut(s) 567, 600, 661, 1072, 1125, 1169, 1242
SfcI CTRYAG 2 cut(s) 276, 823
SinI GGWCC 2 cut(s) 336, 758
SmiMI CAYNNNNRTG 2 cut(s) 647, 1115
SphI GCATGC 1 cut(s) 347
Sse9I AATT 5 cut(s) 87, 111, 221, 567, 890
SspI AATATT 1 cut(s) 1024
SstI GAGCTC 1 cut(s) 1192
StyD4I CCNGG 3 cut(s) 4, 338, 1099
StyI CCWWGG 2 cut(s) 874, 979
TaaI ACNGT 3 cut(s) 683, 824, 1220
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 126, 1106, 1268
TasI AATT 5 cut(s) 87, 111, 221, 567, 890
TatI WGTACW 1 cut(s) 601
TauI GCSGC 6 cut(s) 234, 237, 240, 243, 632, 1132
TfiI GAWTC 2 cut(s) 778, 1091
Tru1I TTAA 2 cut(s) 75, 1113
Tru9I TTAA 2 cut(s) 75, 1113
TscAI CASTG 4 cut(s) 332, 584, 827, 1155
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 187, 788
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 4 cut(s) 332, 584, 827, 1155
VpaK11BI GGWCC 2 cut(s) 336, 758
VspI ATTAAT 2 cut(s) 75, 1113
XagI CCTNNNNNAGG 1 cut(s) 443
XapI RAATTY 2 cut(s) 221, 890
XceI RCATGY 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.