Transcriptional activator
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom12g01680 pycom12g01700 pycom12g01710 pycom12g01760 pycom12g01800 pycom12g01850 pycom12g01860 pycom12g01880 pycom12g01890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 83 |
| AciI | CCGC | 1 cut(s) | 320 |
| AclWI | GGATC | 1 cut(s) | 162 |
| AcoI | YGGCCR | 1 cut(s) | 362 |
| AcsI | RAATTY | 2 cut(s) | 179, 302 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 85 |
| AgsI | TTSAA | 2 cut(s) | 238, 347 |
| AluBI | AGCT | 2 cut(s) | 265, 277 |
| AluI | AGCT | 2 cut(s) | 265, 277 |
| AlwI | GGATC | 1 cut(s) | 162 |
| AoxI | GGCC | 1 cut(s) | 362 |
| ApeKI | GCWGC | 1 cut(s) | 262 |
| ApoI | RAATTY | 2 cut(s) | 179, 302 |
| BalI | TGGCCA | 1 cut(s) | 364 |
| BauI | CACGAG | 1 cut(s) | 18 |
| BbvI | GCAGC | 1 cut(s) | 274 |
| BccI | CCATC | 1 cut(s) | 333 |
| BfaI | CTAG | 1 cut(s) | 65 |
| BfuAI | ACCTGC | 1 cut(s) | 83 |
| BisI | GCNGC | 1 cut(s) | 263 |
| BlsI | GCNGC | 1 cut(s) | 264 |
| BmsI | GCATC | 1 cut(s) | 211 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 85 |
| Bse1I | ACTGG | 2 cut(s) | 356, 365 |
| BseGI | GGATG | 2 cut(s) | 16, 344 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 85 |
| BseNI | ACTGG | 2 cut(s) | 356, 365 |
| BseXI | GCAGC | 1 cut(s) | 274 |
| BsgI | GTGCAG | 1 cut(s) | 281 |
| BshFI | GGCC | 1 cut(s) | 364 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 85 |
| BsnI | GGCC | 1 cut(s) | 364 |
| Bsp143I | GATC | 2 cut(s) | 33, 154 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspANI | GGCC | 1 cut(s) | 364 |
| BspMI | ACCTGC | 1 cut(s) | 83 |
| BspPI | GGATC | 1 cut(s) | 162 |
| BsrI | ACTGG | 2 cut(s) | 356, 365 |
| BssMI | GATC | 2 cut(s) | 33, 154 |
| BssSI | CACGAG | 1 cut(s) | 18 |
| Bst2BI | CACGAG | 1 cut(s) | 18 |
| BstF5I | GGATG | 2 cut(s) | 16, 344 |
| BstKTI | GATC | 2 cut(s) | 36, 157 |
| BstMBI | GATC | 2 cut(s) | 33, 154 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 230 |
| BstV1I | GCAGC | 1 cut(s) | 274 |
| BsuRI | GGCC | 1 cut(s) | 364 |
| BtsCI | GGATG | 2 cut(s) | 16, 344 |
| BveI | ACCTGC | 1 cut(s) | 83 |
| CviAII | CATG | 1 cut(s) | 335 |
| CviJI | RGCY | 4 cut(s) | 233, 265, 277, 364 |
| CviKI_1 | RGCY | 4 cut(s) | 233, 265, 277, 364 |
| DpnI | GATC | 2 cut(s) | 35, 156 |
| DpnII | GATC | 2 cut(s) | 33, 154 |
| EaeI | YGGCCR | 1 cut(s) | 362 |
| EcoT22I | ATGCAT | 1 cut(s) | 142 |
| FaeI | CATG | 1 cut(s) | 338 |
| FaiI | YATR | 7 cut(s) | 72, 138, 142, 144, 152, 317, 336 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 249, 281 |
| FatI | CATG | 1 cut(s) | 334 |
| FauI | CCCGC | 1 cut(s) | 313 |
| FauNDI | CATATG | 1 cut(s) | 142 |
| Fnu4HI | GCNGC | 1 cut(s) | 263 |
| FokI | GGATG | 2 cut(s) | 23, 351 |
| Fsp4HI | GCNGC | 1 cut(s) | 263 |
| FspBI | CTAG | 1 cut(s) | 65 |
| GluI | GCNGC | 1 cut(s) | 263 |
| HaeIII | GGCC | 1 cut(s) | 364 |
| Hin1II | CATG | 1 cut(s) | 338 |
| Hpy166II | GTNNAC | 1 cut(s) | 130 |
| Hpy188I | TCNGA | 2 cut(s) | 118, 372 |
| Hpy188III | TCNNGA | 2 cut(s) | 18, 173 |
| Hpy8I | GTNNAC | 1 cut(s) | 130 |
| HpyAV | CCTTC | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 5 cut(s) | 140, 146, 224, 262, 328 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 230 |
| Hsp92II | CATG | 1 cut(s) | 338 |
| Kzo9I | GATC | 2 cut(s) | 33, 154 |
| LpnPI | CCDG | 5 cut(s) | 88, 92, 188, 346, 369 |
| Lsp1109I | GCAGC | 1 cut(s) | 274 |
| LweI | GCATC | 1 cut(s) | 211 |
| MaeI | CTAG | 1 cut(s) | 65 |
| MaeIII | GTNAC | 4 cut(s) | 60, 88, 191, 198 |
| MalI | GATC | 2 cut(s) | 35, 156 |
| MboI | GATC | 2 cut(s) | 33, 154 |
| MboII | GAAGA | 2 cut(s) | 43, 94 |
| MlsI | TGGCCA | 1 cut(s) | 364 |
| MluCI | AATT | 5 cut(s) | 147, 158, 179, 302, 329 |
| MluNI | TGGCCA | 1 cut(s) | 364 |
| MnlI | CCTC | 2 cut(s) | 223, 277 |
| Mox20I | TGGCCA | 1 cut(s) | 364 |
| Mph1103I | ATGCAT | 1 cut(s) | 142 |
| MscI | TGGCCA | 1 cut(s) | 364 |
| MseI | TTAA | 4 cut(s) | 45, 56, 123, 296 |
| MslI | CAYNNNNRTG | 1 cut(s) | 117 |
| Msp20I | TGGCCA | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 230 |
| NdeI | CATATG | 1 cut(s) | 142 |
| NdeII | GATC | 2 cut(s) | 33, 154 |
| NlaIII | CATG | 1 cut(s) | 338 |
| NmuCI | GTSAC | 2 cut(s) | 60, 198 |
| NsiI | ATGCAT | 1 cut(s) | 142 |
| PkrI | GCNGC | 1 cut(s) | 264 |
| RseI | CAYNNNNRTG | 1 cut(s) | 117 |
| SaqAI | TTAA | 4 cut(s) | 45, 56, 123, 296 |
| SatI | GCNGC | 1 cut(s) | 263 |
| Sau3AI | GATC | 2 cut(s) | 33, 154 |
| SetI | ASST | 5 cut(s) | 77, 90, 267, 279, 288 |
| SfaNI | GCATC | 1 cut(s) | 211 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 117 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 5 cut(s) | 147, 158, 179, 302, 329 |
| SsiI | CCGC | 1 cut(s) | 320 |
| SspMI | CTAG | 1 cut(s) | 65 |
| TasI | AATT | 5 cut(s) | 147, 158, 179, 302, 329 |
| Tru1I | TTAA | 4 cut(s) | 45, 56, 123, 296 |
| Tru9I | TTAA | 4 cut(s) | 45, 56, 123, 296 |
| TseFI | GTSAC | 2 cut(s) | 60, 198 |
| TseI | GCWGC | 1 cut(s) | 262 |
| Tsp45I | GTSAC | 2 cut(s) | 60, 198 |
| TspDTI | ATGAA | 3 cut(s) | 192, 255, 323 |
| XapI | RAATTY | 2 cut(s) | 179, 302 |
| XspI | CTAG | 1 cut(s) | 65 |
| Zsp2I | ATGCAT | 1 cut(s) | 142 |