pycom12g01890

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0018930
Physical Location & Seq
Reverse (-)
1560817 .. 1561264
448 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01890.1

Sequence Viewer

Length: 201 bp
ATGTCCCATGTGCTTCATCTACTGCTGGTTAAACCAGAAATACAGCCGTTGAATCGGTTAGTTAAAGCCATAAGGACATACCTGCCAGAAGAAGGAAAAGGAGTACAGAGATGCACTGAGTTTTTCAATGAAAAGAACAGAGAAAAAGTGCAGCTTATCACAAAGCTAATGGAGGTTAGTTTGTCACAGGAAAGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

67

Amino Acids

7.79

Weight (kDa)

8.93

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 10 - 64 1.1e-07 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 52, 127
AluBI AGCT 2 cut(s) 154, 166
AluI AGCT 2 cut(s) 154, 166
ApeKI GCWGC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 90
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmsI GCATC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 8
CviJI RGCY 4 cut(s) 46, 68, 154, 166
CviKI_1 RGCY 4 cut(s) 46, 68, 154, 166
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 117
FaeI CATG 1 cut(s) 11
FaiI YATR 3 cut(s) 9, 71, 79
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 114, 151
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 11
LpnPI CCDG 5 cut(s) 11, 48, 95, 99, 173
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 183
MboII GAAGA 1 cut(s) 101
MnlI CCTC 1 cut(s) 166
MseI TTAA 2 cut(s) 30, 63
NlaIII CATG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 153
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 30, 63
SatI GCNGC 1 cut(s) 152
SetI ASST 4 cut(s) 84, 156, 168, 177
SfaNI GCATC 1 cut(s) 101
SgeI CNNG 5 cut(s) 20, 38, 47, 94, 98
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 2 cut(s) 30, 63
Tru9I TTAA 2 cut(s) 30, 63
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 5, 144
TspRI CASTG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.