pycom12g01760

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0018930
Physical Location & Seq
Reverse (-)
1464433 .. 1469773
5341 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01760.3

Sequence Viewer

Length: 480 bp
ATGCAAAGCTTATGGAAAGAGCTTGAAGGGCTCTCAGATCAGATGAGGAAGGATGTTTCACAAGTTCGTAAGAAGATCGATGCGATTAACAAAGAGTTAAAGCCACTAGGACATACCTGCCAGAAGAAGGAAAAGGAGTACCAAGATGCACTTGAGTTTTTCAATGAAAAGAAGAGAGAAAAAGTGCAGCTTATCACAAGGCTAATGGAGGTTAGTTTGTTAAACAATTGTTTACTTGGCTTAAGTTGCAATTTCATGGATGGGTGGAACCCGAACCAGTCTGGCCAGTCCGGAGTTAGAGTGAGCATGGTTGAGCCTGCTTTGACAAATTACCAATCCTACAAAATTTGGGCTTACCGCCGGTTAGGAGTTCAACCTGTCCAAACTCTCAACCGATGCTGGTTATCTCTCATTCTATTTAGTAAAAGTGTAGAAAGTGTTTATATAATTCAACGTTTTGAGATTGTTTTGTTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

160

Amino Acids

18.62

Weight (kDa)

9.19

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 290
AciI CCGC 1 cut(s) 358
AclI AACGTT 1 cut(s) 454
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 345
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 127
AflII CTTAAG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 26, 163, 374, 452
AluBI AGCT 3 cut(s) 9, 22, 190
AluI AGCT 3 cut(s) 9, 22, 190
Aor13HI TCCGGA 1 cut(s) 290
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 345
BalI TGGCCA 1 cut(s) 285
BanII GRGCYC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 254
BfaI CTAG 1 cut(s) 107
BfrI CTTAAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 269
BmsI GCATC 3 cut(s) 70, 136, 386
BpuEI CTTGAG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 277, 286
BseAI TCCGGA 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 78
BseGI GGATG 2 cut(s) 58, 265
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 277, 286
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 1 cut(s) 285
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 2 cut(s) 291, 361
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 33
Bsp13I TCCGGA 1 cut(s) 290
Bsp143I GATC 2 cut(s) 37, 75
BspACI CCGC 1 cut(s) 358
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 47
BspDI ATCGAT 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 2 cut(s) 277, 286
BssAI RCCGGY 1 cut(s) 360
BssMI GATC 2 cut(s) 37, 75
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 1 cut(s) 167
BstAFI CTTAAG 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 58, 265
BstKTI GATC 2 cut(s) 40, 78
BstMBI GATC 2 cut(s) 37, 75
BstMWI GCNNNNNNNGC 2 cut(s) 28, 246
BstV1I GCAGC 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 1 cut(s) 285
BsuTUI ATCGAT 1 cut(s) 78
BtsCI GGATG 2 cut(s) 58, 265
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 360
ClaI ATCGAT 1 cut(s) 78
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 256, 307
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 34
DpnI GATC 2 cut(s) 39, 77
DpnII GATC 2 cut(s) 37, 75
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 2 cut(s) 259, 310
FaiI YATR 6 cut(s) 13, 114, 257, 308, 444, 446
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 174, 206
FatI CATG 2 cut(s) 255, 306
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 2 cut(s) 65, 272
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 285
HapII CCGG 2 cut(s) 291, 361
Hin1II CATG 2 cut(s) 259, 310
HindIII AAGCTT 1 cut(s) 7
HpaII CCGG 2 cut(s) 291, 361
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 37, 42
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 20, 43, 121
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 4 cut(s) 4, 149, 187, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 246
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 2 cut(s) 259, 310
Kpn2I TCCGGA 1 cut(s) 290
Kzo9I GATC 2 cut(s) 37, 75
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 3 cut(s) 70, 136, 386
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 1 cut(s) 471
MalI GATC 2 cut(s) 39, 77
MboI GATC 2 cut(s) 37, 75
MboII GAAGA 3 cut(s) 85, 136, 184
MfeI CAATTG 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 5 cut(s) 226, 250, 328, 345, 447
MluNI TGGCCA 1 cut(s) 285
MnlI CCTC 2 cut(s) 39, 202
Mox20I TGGCCA 1 cut(s) 285
MroI TCCGGA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 285
MseI TTAA 4 cut(s) 87, 98, 221, 242
Msp20I TGGCCA 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 241
MspI CCGG 2 cut(s) 291, 361
MunI CAATTG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 28, 246
NdeII GATC 2 cut(s) 37, 75
NlaIII CATG 2 cut(s) 259, 310
NlaIV GGNNCC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 269
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 4 cut(s) 87, 98, 221, 242
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 2 cut(s) 37, 75
SduI GDGCHC 1 cut(s) 33
SetI ASST 7 cut(s) 11, 24, 119, 192, 213, 379, 457
SfaNI GCATC 3 cut(s) 70, 136, 386
SmlI CTYRAG 2 cut(s) 152, 241
SmoI CTYRAG 2 cut(s) 152, 241
Sse9I AATT 5 cut(s) 226, 250, 328, 345, 447
SsiI CCGC 1 cut(s) 358
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 1 cut(s) 457
TaqI TCGA 1 cut(s) 78
TasI AATT 5 cut(s) 226, 250, 328, 345, 447
Tru1I TTAA 4 cut(s) 87, 98, 221, 242
Tru9I TTAA 4 cut(s) 87, 98, 221, 242
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 180, 244
Vha464I CTTAAG 1 cut(s) 241
XapI RAATTY 1 cut(s) 345
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.