pycom12g01700

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0018930
Physical Location & Seq
Reverse (-)
1427540 .. 1428681
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01700.3

Sequence Viewer

Length: 348 bp
ATGATGTGTGGCATTCGAGGACAAACAAATGACACATGTAGTTGGGAATTTGTGAGTTACATGCAAAGCACATGGAAAGAGCTTGAAGGGCTCTCAGATCAGATGAGGAAGGATGTTTCACAAGTTCGTAAGAAGATCGATGCGATTAACAAAGAGTTAAAGCCACTAGGACAAACCTGCCAGAAGAAGGAAAAGGAGTACCGAGATGCACTTGAGTTTTTCAATGAAAAGAAGAGAGAAAAAGTGCAGCTTATCACAAAGCTAATAACAATTGTTTACTTGGCACAGATAGGGTTGCAATTTCACGGATGGGTGGAACCCGAACCAGTCTGGCCAGTCCGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

116

Amino Acids

13.58

Weight (kDa)

8.77

Isoelectric Point (pI)

23.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 339
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 1 cut(s) 47
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 35
AgsI TTSAA 2 cut(s) 86, 223
AluBI AGCT 3 cut(s) 82, 250, 262
AluI AGCT 3 cut(s) 82, 250, 262
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 47
BalI TGGCCA 1 cut(s) 334
BanII GRGCYC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 303
BfaI CTAG 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 2 cut(s) 130, 196
BpuEI CTTGAG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 326, 335
BseAI TCCGGA 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 138
BseGI GGATG 2 cut(s) 118, 314
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 326, 335
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 138
BsiSI CCGG 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 187
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 93
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 97, 135
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 107
BspDI ATCGAT 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 326, 335
BssMI GATC 2 cut(s) 97, 135
Bst6I CTCTTC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 118, 314
BstKTI GATC 2 cut(s) 100, 138
BstMBI GATC 2 cut(s) 97, 135
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 2 cut(s) 39, 64
BstV1I GCAGC 1 cut(s) 259
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 1 cut(s) 334
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 2 cut(s) 118, 314
BveI ACCTGC 1 cut(s) 185
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 199
CviAII CATG 3 cut(s) 36, 61, 72
CviJI RGCY 6 cut(s) 82, 91, 163, 250, 262, 334
CviKI_1 RGCY 6 cut(s) 82, 91, 163, 250, 262, 334
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 94
DpnI GATC 2 cut(s) 99, 137
DpnII GATC 2 cut(s) 97, 135
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 3 cut(s) 39, 64, 75
FaiI YATR 3 cut(s) 37, 62, 73
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 3 cut(s) 35, 60, 71
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 2 cut(s) 125, 321
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 340
Hin1II CATG 3 cut(s) 39, 64, 75
HpaII CCGG 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 97, 102
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 80, 103, 181
HpyCH4V TGCA 4 cut(s) 64, 209, 247, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 94
Hsp92II CATG 3 cut(s) 39, 64, 75
Kpn2I TCCGGA 1 cut(s) 339
Kzo9I GATC 2 cut(s) 97, 135
LpnPI CCDG 4 cut(s) 190, 194, 316, 339
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 2 cut(s) 130, 196
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 99, 137
MboI GATC 2 cut(s) 97, 135
MboII GAAGA 3 cut(s) 145, 196, 244
MfeI CAATTG 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 3 cut(s) 47, 270, 299
MluNI TGGCCA 1 cut(s) 334
MnlI CCTC 2 cut(s) 11, 99
Mox20I TGGCCA 1 cut(s) 334
MroI TCCGGA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 334
MseI TTAA 2 cut(s) 147, 158
Msp20I TGGCCA 1 cut(s) 334
MspI CCGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 2 cut(s) 97, 135
NlaIII CATG 3 cut(s) 39, 64, 75
NlaIV GGNNCC 1 cut(s) 318
NspI RCATGY 2 cut(s) 39, 64
PciI ACATGT 1 cut(s) 35
PctI GAATGC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 249
PscI ACATGT 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 318
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 147, 158
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 2 cut(s) 97, 135
SduI GDGCHC 1 cut(s) 93
SetI ASST 4 cut(s) 84, 179, 252, 264
SfaNI GCATC 2 cut(s) 130, 196
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 3 cut(s) 47, 270, 299
SspMI CTAG 1 cut(s) 167
TaqI TCGA 2 cut(s) 16, 138
TasI AATT 3 cut(s) 47, 270, 299
Tru1I TTAA 2 cut(s) 147, 158
Tru9I TTAA 2 cut(s) 147, 158
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 321
XapI RAATTY 1 cut(s) 47
XceI RCATGY 2 cut(s) 39, 64
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.