pycom12g01800

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0018930
Physical Location & Seq
Reverse (-)
1506291 .. 1506488
198 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01800.1

Sequence Viewer

Length: 198 bp
ATGGATCAATTCGTGCGTGTTCGTGATGAATTTTGGGTTTGTAACTTGTCACAGAAAAAGGAGTACAGAGTTGCACTTGAGTTTTTAAATGAAAAGAACAGAGAAAAAGTGCAGCTTATCACAAAGCTAATGGAGGTTATTTTGTTAAACAATTTTTTACTTGGCATAGCTAGGGTTGCAATTTCATGGATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

66

Amino Acids

7.79

Weight (kDa)

8.98

Isoelectric Point (pI)

8.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 18 - 47 2e-08 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 1 cut(s) 65
AluBI AGCT 3 cut(s) 115, 127, 170
AluI AGCT 3 cut(s) 115, 127, 170
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 29
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 184
BfaI CTAG 1 cut(s) 171
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 98
BseGI GGATG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 131
Bsp143I GATC 1 cut(s) 4
BspPI GGATC 1 cut(s) 12
BssMI GATC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 186
CviJI RGCY 3 cut(s) 115, 127, 170
CviKI_1 RGCY 3 cut(s) 115, 127, 170
CviQI GTAC 1 cut(s) 64
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraI TTTAAA 1 cut(s) 87
FaeI CATG 1 cut(s) 189
FaiI YATR 2 cut(s) 167, 187
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FatI CATG 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 74, 112, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 1 cut(s) 189
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 41, 48
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MluCI AATT 4 cut(s) 8, 29, 151, 180
MnlI CCTC 1 cut(s) 127
MseI TTAA 2 cut(s) 86, 146
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 114
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 86, 146
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 4
SetI ASST 4 cut(s) 117, 129, 138, 172
SgeI CNNG 7 cut(s) 25, 29, 35, 58, 89, 173, 183
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 4 cut(s) 8, 29, 151, 180
SspMI CTAG 1 cut(s) 171
TasI AATT 4 cut(s) 8, 29, 151, 180
TatI WGTACW 1 cut(s) 63
Tru1I TTAA 2 cut(s) 86, 146
Tru9I TTAA 2 cut(s) 86, 146
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 42, 105, 174
XapI RAATTY 1 cut(s) 29
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.