pycom12g01710

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0018930
Physical Location & Seq
Reverse (-)
1433402 .. 1436425
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGAAACGAAAATTTTTGCCATTAATCTTTAGTGAGCTTGAAGGGCTCTTAGATCCGATGAGGAAGGATGTTTCACAAGTTCGTAAGAAGATCAATGGGATTAACAAAGAGTTAAAGTCACTAGGACATACCTGCCAGAAGAAGGAAAAGGAATACAGAGATGCACTTGAGGCTTTCAATGAAAAGAACAGAGAAAAAGTGCAGCTTATCACAAAGCTAATGGAGGTTAGTTTGTCACAGGAAAGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

84

Amino Acids

9.83

Weight (kDa)

9.48

Isoelectric Point (pI)

14.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 4 - 81 1.4e-33 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 41, 178
AluBI AGCT 3 cut(s) 37, 205, 217
AluI AGCT 3 cut(s) 37, 205, 217
AlwI GGATC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 11
AseI ATTAAT 1 cut(s) 23
BanII GRGCYC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 214
BfaI CTAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmsI GCATC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 52, 90
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 47
BssMI GATC 2 cut(s) 52, 90
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 55, 93
BstMBI GATC 2 cut(s) 52, 90
BstMWI GCNNNNNNNGC 2 cut(s) 43, 170
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BtsCI GGATG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 140
CviJI RGCY 5 cut(s) 37, 46, 173, 205, 217
CviKI_1 RGCY 5 cut(s) 37, 46, 173, 205, 217
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 54, 92
DpnII GATC 2 cut(s) 52, 90
Eco24I GRGCYC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 48
FaiI YATR 1 cut(s) 129
FalI AAGNNNNNCTT 2 cut(s) 189, 221
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 35, 58, 136
HpyCH4V TGCA 2 cut(s) 164, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 170
HpyF3I CTNAG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 52, 90
LpnPI CCDG 3 cut(s) 145, 149, 224
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 117, 234
MalI GATC 2 cut(s) 54, 92
MboI GATC 2 cut(s) 52, 90
MboII GAAGA 2 cut(s) 100, 151
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 11
MnlI CCTC 3 cut(s) 54, 163, 217
MseI TTAA 3 cut(s) 23, 102, 113
MwoI GCNNNNNNNGC 2 cut(s) 43, 170
NdeII GATC 2 cut(s) 52, 90
NmuCI GTSAC 2 cut(s) 117, 234
PkrI GCNGC 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 23
PsuI RGATCY 1 cut(s) 52
SaqAI TTAA 3 cut(s) 23, 102, 113
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 52, 90
SduI GDGCHC 1 cut(s) 48
SetI ASST 5 cut(s) 39, 134, 207, 219, 228
SfaNI GCATC 1 cut(s) 151
SgeI CNNG 6 cut(s) 50, 89, 134, 144, 148, 179
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 122
TasI AATT 1 cut(s) 11
Tru1I TTAA 3 cut(s) 23, 102, 113
Tru9I TTAA 3 cut(s) 23, 102, 113
TseFI GTSAC 2 cut(s) 117, 234
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 2 cut(s) 117, 234
TspDTI ATGAA 2 cut(s) 17, 195
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 1 cut(s) 11
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.